Rh5CG576500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0006472
Physical Location & Seq
Forward (+)
81646450 .. 81646668
219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG576500.1

Sequence Viewer

Length: 219 bp
ATGCTAACCTCTACCGCCGTCTGCCCGAGAATCAAGCCTGCAACTCCATCCTCAAAATCTGCAGATCTGCCTCCGTCGGAAGCCAACAAGGAAGAGAAAGAGAGCCTCGCCACCAAGCCTTGCGCCGGCAGCCTCCTCGCCACAAAAGCCCGAGTCCCTCCAGTTCGCACAACCCAAGAACCATCACCCGGAAATCCTGGACGGCAAACCGATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

7.51

Weight (kDa)

9.18

Isoelectric Point (pI)

57.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 15
AfiI CCNNNNNNNGG 2 cut(s) 125, 188
AjnI CCWGG 1 cut(s) 196
Ama87I CYCGRG 2 cut(s) 25, 150
ApeKI GCWGC 1 cut(s) 129
AspLEI GCGC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 177
AvaI CYCGRG 2 cut(s) 25, 150
BbvI GCAGC 1 cut(s) 141
BccI CCATC 2 cut(s) 55, 190
BceAI ACGGC 1 cut(s) 2
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 1 cut(s) 198
BcnI CCSGG 1 cut(s) 189
BfaI CTAG 1 cut(s) 217
BfmI CTRYAG 1 cut(s) 60
BglII AGATCT 1 cut(s) 64
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
Bme1390I CCNGG 2 cut(s) 189, 198
BmeT110I CYCGRG 2 cut(s) 25, 150
BmrFI CCNGG 2 cut(s) 189, 198
BpmI CTGGAG 1 cut(s) 144
BpuMI CCSGG 1 cut(s) 189
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 188
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 161
BseBI CCWGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 47
BseLI CCNNNNNNNGG 2 cut(s) 125, 188
BseNI ACTGG 1 cut(s) 161
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 141
BsiHKCI CYCGRG 2 cut(s) 25, 150
BsiSI CCGG 2 cut(s) 126, 189
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 2 cut(s) 125, 188
BsmFI GGGAC 1 cut(s) 140
BsoBI CYCGRG 2 cut(s) 25, 150
Bsp143I GATC 2 cut(s) 64, 211
BspACI CCGC 1 cut(s) 15
BspMAI CTGCAG 1 cut(s) 64
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 1 cut(s) 161
BssAI RCCGGY 1 cut(s) 125
BssMI GATC 2 cut(s) 64, 211
Bst2UI CCWGG 1 cut(s) 198
Bst6I CTCTTC 1 cut(s) 87
BstC8I GCNNGC 2 cut(s) 39, 127
BstF5I GGATG 1 cut(s) 47
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 2 cut(s) 67, 214
BstMBI GATC 2 cut(s) 64, 211
BstMWI GCNNNNNNNGC 2 cut(s) 129, 146
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 2 cut(s) 187, 196
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
BtsCI GGATG 1 cut(s) 47
Cac8I GCNNGC 2 cut(s) 39, 127
CfoI GCGC 1 cut(s) 125
Cfr10I RCCGGY 1 cut(s) 125
CviJI RGCY 6 cut(s) 37, 83, 105, 118, 132, 149
CviKI_1 RGCY 6 cut(s) 37, 83, 105, 118, 132, 149
DpnI GATC 2 cut(s) 66, 213
DpnII GATC 2 cut(s) 64, 211
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco88I CYCGRG 2 cut(s) 25, 150
EcoRII CCWGG 1 cut(s) 196
FaqI GGGAC 1 cut(s) 140
Fnu4HI GCNGC 1 cut(s) 130
FokI GGATG 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 130
FspBI CTAG 1 cut(s) 217
GlaI GCGC 1 cut(s) 124
GluI GCNGC 1 cut(s) 130
GsuI CTGGAG 1 cut(s) 144
HapII CCGG 2 cut(s) 126, 189
HhaI GCGC 1 cut(s) 125
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HinfI GANTC 2 cut(s) 30, 153
HpaII CCGG 2 cut(s) 126, 189
HphI GGTGA 1 cut(s) 177
Hpy188I TCNGA 1 cut(s) 79
Hpy99I CGWCG 1 cut(s) 79
HpyCH4V TGCA 2 cut(s) 41, 62
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 146
HspAI GCGC 1 cut(s) 123
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
Kzo9I GATC 2 cut(s) 64, 211
LpnPI CCDG 6 cut(s) 51, 139, 174, 183, 202, 210
Lsp1109I GCAGC 1 cut(s) 141
MaeI CTAG 1 cut(s) 217
MalI GATC 2 cut(s) 66, 213
MboI GATC 2 cut(s) 64, 211
MboII GAAGA 1 cut(s) 104
MflI RGATCY 1 cut(s) 64
MlyI GAGTC 1 cut(s) 162
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 7 cut(s) 19, 61, 81, 116, 143, 146, 168
MroNI GCCGGC 1 cut(s) 125
MspI CCGG 2 cut(s) 126, 189
MspR9I CCNGG 2 cut(s) 189, 198
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 2 cut(s) 129, 146
NaeI GCCGGC 1 cut(s) 127
NciI CCSGG 1 cut(s) 189
NdeII GATC 2 cut(s) 64, 211
NgoMIV GCCGGC 1 cut(s) 125
PdiI GCCGGC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 30
PfoI TCCNGGA 1 cut(s) 196
PkrI GCNGC 1 cut(s) 131
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PstI CTGCAG 1 cut(s) 64
PsuI RGATCY 1 cut(s) 64
SatI GCNGC 1 cut(s) 130
Sau3AI GATC 2 cut(s) 64, 211
SchI GAGTC 1 cut(s) 162
ScrFI CCNGG 2 cut(s) 189, 198
SetI ASST 1 cut(s) 11
SfcI CTRYAG 1 cut(s) 60
SsiI CCGC 1 cut(s) 15
SspMI CTAG 1 cut(s) 217
StyD4I CCNGG 2 cut(s) 187, 196
TfiI GAWTC 1 cut(s) 30
TseI GCWGC 1 cut(s) 129
TspGWI ACGGA 1 cut(s) 63
XspI CTAG 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.