RLG00000036952

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006472
Physical Location & Seq
Forward (+)
86838929 .. 86841088
2160 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036952

Sequence Viewer

Length: 384 bp
ATGGCGGAAATCGAAATCAAACTTCGCACTTTAAAAGCTCAACGACCAACAATAGTAAAAAGACAAATGGCAATATTTCGAGTACTTGGTGTACTACGAGACCGACGTCACCGGAAAGCTGAGCTGAAGGGCATTCAGGTCCGAAGACTGTTCTTTTGGTTCGACGTCAATGAGATCAGGGTCTATTTGCCGCCGTCCGATAGTATATACTTCACCGTTGGGATCATCAACAAGAAGCTCGATGTCGATCAGTTCCAGAGTGTTCATTCCTGCCGTGACGGGCTTTTGGGTTCGGGTTCGAATTCTTGCCTCGGGTCGTTGAAACGGGTCATTCAGCTTCCATCTCCACTGGAAGAAGAGATAAAGATGCTACTTACTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

128

Amino Acids

14.71

Weight (kDa)

9.94

Isoelectric Point (pI)

66.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 40 - 86 3.2e-10 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 109, 168
AciI CCGC 2 cut(s) 5, 191
AclWI GGATC 1 cut(s) 230
AcsI RAATTY 1 cut(s) 301
AcuI CTGAAG 1 cut(s) 146
AcyI GRCGYC 2 cut(s) 106, 165
AfaI GTAC 2 cut(s) 84, 93
AgsI TTSAA 1 cut(s) 322
AluBI AGCT 5 cut(s) 38, 119, 124, 238, 337
AluI AGCT 5 cut(s) 38, 119, 124, 238, 337
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 1 cut(s) 230
Ama87I CYCGRG 1 cut(s) 311
ApoI RAATTY 1 cut(s) 301
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 2 cut(s) 101, 205
AsuII TTCGAA 1 cut(s) 299
AvaI CYCGRG 1 cut(s) 311
AvaII GGWCC 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 151
BccI CCATC 1 cut(s) 349
BceAI ACGGC 2 cut(s) 178, 258
BcoDI GTCTC 1 cut(s) 93
BisI GCNGC 1 cut(s) 191
BlpI GCTNAGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 192
BmcAI AGTACT 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 139
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 139
BmsI GCATC 1 cut(s) 357
BoxI GACNNNNGTC 1 cut(s) 105
BpiI GAAGAC 1 cut(s) 151
Bpu1102I GCTNAGC 1 cut(s) 120
Bpu14I TTCGAA 1 cut(s) 299
BsaBI GATNNNNATC 1 cut(s) 246
BsaHI GRCGYC 2 cut(s) 106, 165
BsaI GGTCTC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 310
BsaWI WCCGGW 1 cut(s) 111
Bse1I ACTGG 1 cut(s) 354
Bse8I GATNNNNATC 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 310
BseJI GATNNNNATC 1 cut(s) 246
BseMII CTCAG 2 cut(s) 111, 369
BseNI ACTGG 1 cut(s) 354
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 1 cut(s) 112
BsmAI GTCTC 1 cut(s) 93
BsmI GAATGC 1 cut(s) 132
Bso31I GGTCTC 1 cut(s) 93
BsoBI CYCGRG 1 cut(s) 311
Bsp119I TTCGAA 1 cut(s) 299
Bsp143I GATC 3 cut(s) 174, 222, 247
Bsp1720I GCTNAGC 1 cut(s) 120
BspACI CCGC 2 cut(s) 5, 191
BspCNI CTCAG 2 cut(s) 112, 370
BspPI GGATC 1 cut(s) 230
BspT104I TTCGAA 1 cut(s) 299
BspTNI GGTCTC 1 cut(s) 93
BsrI ACTGG 1 cut(s) 354
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 3 cut(s) 174, 222, 247
BssNI GRCGYC 2 cut(s) 106, 165
Bst4CI ACNGT 2 cut(s) 150, 217
Bst6I CTCTTC 1 cut(s) 351
BstACI GRCGYC 2 cut(s) 106, 165
BstBI TTCGAA 1 cut(s) 299
BstDEI CTNAG 2 cut(s) 120, 378
BstKTI GATC 3 cut(s) 177, 225, 250
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 3 cut(s) 174, 222, 247
BstPAI GACNNNNGTC 1 cut(s) 105
BstV2I GAAGAC 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 347
Cfr13I GGNCC 1 cut(s) 139
Csp6I GTAC 2 cut(s) 83, 92
CviJI RGCY 6 cut(s) 38, 119, 124, 238, 283, 337
CviKI_1 RGCY 6 cut(s) 38, 119, 124, 238, 283, 337
CviQI GTAC 2 cut(s) 83, 92
DdeI CTNAG 2 cut(s) 120, 378
DpnI GATC 3 cut(s) 176, 224, 249
DpnII GATC 3 cut(s) 174, 222, 247
DraI TTTAAA 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 146
Eco88I CYCGRG 1 cut(s) 311
EcoRI GAATTC 1 cut(s) 301
FaiI YATR 2 cut(s) 206, 208
Fnu4HI GCNGC 1 cut(s) 191
Fsp4HI GCNGC 1 cut(s) 191
GluI GCNGC 1 cut(s) 191
HapII CCGG 1 cut(s) 112
Hin1I GRCGYC 2 cut(s) 106, 165
HpaII CCGG 1 cut(s) 112
HphI GGTGA 2 cut(s) 101, 205
Hpy166II GTNNAC 1 cut(s) 92
Hpy188I TCNGA 2 cut(s) 143, 199
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 1 cut(s) 92
Hpy99I CGWCG 2 cut(s) 108, 167
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 2 cut(s) 150, 217
HpyCH4IV ACGT 2 cut(s) 106, 165
HpyF3I CTNAG 2 cut(s) 120, 378
HpySE526I ACGT 2 cut(s) 106, 165
Hsp92I GRCGYC 2 cut(s) 106, 165
Kzo9I GATC 3 cut(s) 174, 222, 247
LpnPI CCDG 6 cut(s) 122, 125, 163, 269, 283, 335
LweI GCATC 1 cut(s) 357
MaeII ACGT 2 cut(s) 106, 165
MaeIII GTNAC 2 cut(s) 107, 275
MalI GATC 3 cut(s) 176, 224, 249
MboI GATC 3 cut(s) 174, 222, 247
MboII GAAGA 3 cut(s) 156, 365, 368
MluCI AATT 1 cut(s) 301
MnlI CCTC 1 cut(s) 320
MseI TTAA 1 cut(s) 32
MspI CCGG 1 cut(s) 112
Mva1269I GAATGC 1 cut(s) 132
NdeII GATC 3 cut(s) 174, 222, 247
NmuCI GTSAC 2 cut(s) 107, 275
NspV TTCGAA 1 cut(s) 299
PcsI WCGNNNNNNNCGW 1 cut(s) 103
PctI GAATGC 1 cut(s) 132
PkrI GCNGC 1 cut(s) 192
PshAI GACNNNNGTC 1 cut(s) 105
PspPI GGNCC 1 cut(s) 139
RsaI GTAC 2 cut(s) 84, 93
RsaNI GTAC 2 cut(s) 83, 92
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 1 cut(s) 191
Sau3AI GATC 3 cut(s) 174, 222, 247
Sau96I GGNCC 1 cut(s) 139
ScaI AGTACT 1 cut(s) 84
SetI ASST 8 cut(s) 40, 109, 121, 126, 141, 168, 240, 339
SfaNI GCATC 1 cut(s) 357
SfuI TTCGAA 1 cut(s) 299
SinI GGWCC 1 cut(s) 139
Sse9I AATT 1 cut(s) 301
SsiI CCGC 2 cut(s) 5, 191
SspI AATATT 1 cut(s) 75
TaaI ACNGT 2 cut(s) 150, 217
TaiI ACGT 2 cut(s) 109, 168
TaqI TCGA 6 cut(s) 12, 79, 162, 240, 246, 299
TaqII GACCGA 1 cut(s) 117
TasI AATT 1 cut(s) 301
TatI WGTACW 2 cut(s) 82, 91
TauI GCSGC 1 cut(s) 193
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 2 cut(s) 107, 275
Tsp45I GTSAC 2 cut(s) 107, 275
TspDTI ATGAA 1 cut(s) 254
TspRI CASTG 1 cut(s) 354
VpaK11BI GGWCC 1 cut(s) 139
XapI RAATTY 1 cut(s) 301
ZraI GACGTC 2 cut(s) 107, 166
ZrmI AGTACT 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.