Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006472

Physical Location & Seq

Genomic Coordinates Reverse (-)

747312 .. 750660

Gene Structure 3349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G009800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCATTGAAACCGAAATCCCATATGGGTCTGATCCCAATCCTCATCTTCTTCATCTCCATCAACCCCAGACCTTCTCTTTCGCTCTCTGAGAGCCCTGCAACAGTGTTCGAGATTTTACCCAAATATGGGCTCCCAAGTGGGCTTCTACCCTCGTCGGTTTCGAACTACACGTTGTCCGACGATGGCCGATTCGTCGTCGTTTTGGGGAAGCCGTGCTACGTGCAGTTCGAGTACTTGGTCTACTACGAGAAGACCATAACTGGCAAGCTCACCTATGGCGCGATCACAGAGTTGAAAGGCATTCAGGTCCAAAGGTTCTTGTTTTGGTTCGATGTGGACGAAATCAGAGTCGATTTGCCGCCTTCTGATAGCATTTATTTCACTGTGGGCATTATTAACAAGAAGCTCGATGTGGATCAGTTCCAAAATGTCCATTCTTGCCGCAACGGGTTATCGGGTTCTTGTCTCGGGTCGTTGAAACGGGGTATTCAGCTTCCATCTCCAGTGGAAGATATTGAGATGCTAATTACTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

180

Amino Acids

20.0

Weight (kDa)

5.71

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19860
fragaria_vesca	FvH4_3g44860
malus_domestica	MD03G1007800.v1.1 MD11G1011000.v1.1
prunus_persica	Prupe.6G009800_v2.0.a1
pyrus_communis	pycom03g00800 pycom11g00690
rosa_chinensis	RchiOBHm_Chr5g0081571
rosa_laevigata	RLG00000036949 RLG00000036952
rosa_multiflora	Rmu_sc0002176.1_g000001 Rmu_sc0002245.1_g000027 Rmu_sc0002245.1_g000034 Rmu_sc0002706.1_g000006 Rmu_sc0002706.1_g000011 Rmu_sc0002706.1_g000017
rosa_roxburghii	Rroxscaffold_1G00001980
rosa_rugosa	Rorug05G0477400
rosa_samantha	Rh5AG528800 Rh5BG553500 Rh5BG553700 Rh5CG576500 Rh5CG576600 Rh5DG563700 Rh5DG563800
rosa_wichuraiana	Rw5G049200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	1 cut(s)	284
AciI	CCGC	2 cut(s)	362, 445
AclWI	GGATC	2 cut(s)	28, 426
AcoI	YGGCCR	1 cut(s)	187
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	2 cut(s)	128, 129
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	3 cut(s)	10, 298, 481
AluBI	AGCT	3 cut(s)	271, 409, 496
AluI	AGCT	3 cut(s)	271, 409, 496
Alw26I	GTCTC	1 cut(s)	473
AlwI	GGATC	2 cut(s)	28, 426
Ama87I	CYCGRG	1 cut(s)	470
AoxI	GGCC	1 cut(s)	187
ArsI	GACNNNNNNTTYG	2 cut(s)	336, 368
AspLEI	GCGC	1 cut(s)	284
AspS9I	GGNCC	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	265
AsuII	TTCGAA	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	310
BanII	GRGCYC	2 cut(s)	98, 135
BarI	GAAGNNNNNNTAC	2 cut(s)	203, 235
BbsI	GAAGAC	1 cut(s)	260
BccI	CCATC	3 cut(s)	68, 179, 508
BceAI	ACGGC	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	473
BisI	GCNGC	2 cut(s)	362, 445
BlsI	GCNGC	2 cut(s)	363, 446
BmcAI	AGTACT	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	310
BmeT110I	CYCGRG	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	134
BmsI	GCATC	1 cut(s)	513
BpiI	GAAGAC	1 cut(s)	260
BpmI	CTGGAG	1 cut(s)	489
Bpu14I	TTCGAA	1 cut(s)	164
BsaAI	YACGTR	1 cut(s)	223
BsaBI	GATNNNNATC	2 cut(s)	38, 417
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 129
Bse1I	ACTGG	2 cut(s)	268, 506
Bse8I	GATNNNNATC	2 cut(s)	38, 417
BseJI	GATNNNNATC	2 cut(s)	38, 417
BseLI	CCNNNNNNNGG	2 cut(s)	128, 129
BseMII	CTCAG	2 cut(s)	81, 525
BseNI	ACTGG	2 cut(s)	268, 506
BsgI	GTGCAG	1 cut(s)	245
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	470
BslI	CCNNNNNNNGG	2 cut(s)	128, 129
BsmAI	GTCTC	1 cut(s)	473
BsmI	GAATGC	1 cut(s)	303
BsnI	GGCC	1 cut(s)	189
BsoBI	CYCGRG	1 cut(s)	470
Bsp119I	TTCGAA	1 cut(s)	164
Bsp1286I	GDGCHC	2 cut(s)	98, 135
Bsp143I	GATC	3 cut(s)	33, 285, 418
BspACI	CCGC	2 cut(s)	362, 445
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	2 cut(s)	82, 526
BspFNI	CGCG	1 cut(s)	284
BspLI	GGNNCC	1 cut(s)	134
BspPI	GGATC	2 cut(s)	28, 426
BspT104I	TTCGAA	1 cut(s)	164
BsrI	ACTGG	2 cut(s)	268, 506
BssMI	GATC	3 cut(s)	33, 285, 418
Bst4CI	ACNGT	2 cut(s)	106, 388
BstBAI	YACGTR	1 cut(s)	223
BstBI	TTCGAA	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	2 cut(s)	90, 534
BstFNI	CGCG	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	284
BstKTI	GATC	3 cut(s)	36, 288, 421
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	3 cut(s)	33, 285, 418
BstUI	CGCG	1 cut(s)	284
BstV2I	GAAGAC	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	189
BtsIMutI	CAGTG	3 cut(s)	111, 384, 513
Cac8I	GCNNGC	1 cut(s)	269
CfoI	GCGC	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	235
CviJI	RGCY	8 cut(s)	96, 133, 145, 189, 214, 271, 409, 496
CviKI_1	RGCY	8 cut(s)	96, 133, 145, 189, 214, 271, 409, 496
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	2 cut(s)	90, 534
DpnI	GATC	3 cut(s)	35, 287, 420
DpnII	GATC	3 cut(s)	33, 285, 418
EaeI	YGGCCR	1 cut(s)	187
Eco24I	GRGCYC	2 cut(s)	98, 135
Eco47I	GGWCC	1 cut(s)	310
Eco88I	CYCGRG	1 cut(s)	470
EcoT38I	GRGCYC	2 cut(s)	98, 135
FaiI	YATR	5 cut(s)	24, 26, 129, 260, 279
FauNDI	CATATG	1 cut(s)	24
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	2 cut(s)	362, 445
FriOI	GRGCYC	2 cut(s)	98, 135
Fsp4HI	GCNGC	2 cut(s)	362, 445
GlaI	GCGC	1 cut(s)	283
GluI	GCNGC	2 cut(s)	362, 445
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	1 cut(s)	189
HhaI	GCGC	1 cut(s)	284
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HinfI	GANTC	2 cut(s)	192, 351
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	2 cut(s)	244, 340
Hpy188I	TCNGA	5 cut(s)	33, 91, 181, 350, 370
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	2 cut(s)	244, 340
Hpy99I	CGWCG	4 cut(s)	160, 185, 200, 203
HpyAV	CCTTC	2 cut(s)	84, 375
HpyCH4III	ACNGT	2 cut(s)	106, 388
HpyCH4IV	ACGT	2 cut(s)	173, 222
HpyCH4V	TGCA	2 cut(s)	101, 226
HpyF3I	CTNAG	2 cut(s)	90, 534
HpySE526I	ACGT	2 cut(s)	173, 222
HspAI	GCGC	1 cut(s)	282
Kzo9I	GATC	3 cut(s)	33, 285, 418
LmnI	GCTCC	1 cut(s)	138
LpnPI	CCDG	5 cut(s)	82, 111, 249, 293, 519
LweI	GCATC	1 cut(s)	513
MaeII	ACGT	2 cut(s)	173, 222
MalI	GATC	3 cut(s)	35, 287, 420
MboI	GATC	3 cut(s)	33, 285, 418
MboII	GAAGA	4 cut(s)	40, 43, 265, 524
MhlI	GDGCHC	2 cut(s)	98, 135
MluCI	AATT	1 cut(s)	528
MlyI	GAGTC	1 cut(s)	360
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	2 cut(s)	53, 163
MseI	TTAA	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	303
MvnI	CGCG	1 cut(s)	284
NdeI	CATATG	1 cut(s)	24
NdeII	GATC	3 cut(s)	33, 285, 418
NlaIV	GGNNCC	1 cut(s)	134
NspV	TTCGAA	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	4 cut(s)	161, 170, 228, 339
PctI	GAATGC	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	192
PkrI	GCNGC	2 cut(s)	363, 446
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
Ppu21I	YACGTR	1 cut(s)	223
PspN4I	GGNNCC	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	310
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	2 cut(s)	362, 445
Sau3AI	GATC	3 cut(s)	33, 285, 418
Sau96I	GGNCC	1 cut(s)	310
ScaI	AGTACT	1 cut(s)	236
SchI	GAGTC	1 cut(s)	360
SduI	GDGCHC	2 cut(s)	98, 135
SetI	ASST	9 cut(s)	76, 176, 225, 273, 278, 312, 320, 411, 498
SfaNI	GCATC	1 cut(s)	513
SfuI	TTCGAA	1 cut(s)	164
SinI	GGWCC	1 cut(s)	310
Sse9I	AATT	1 cut(s)	528
SsiI	CCGC	2 cut(s)	362, 445
TaaI	ACNGT	2 cut(s)	106, 388
TaiI	ACGT	2 cut(s)	176, 225
TaqI	TCGA	6 cut(s)	111, 164, 231, 333, 354, 411
TasI	AATT	1 cut(s)	528
TatI	WGTACW	1 cut(s)	234
TauI	GCSGC	2 cut(s)	364, 447
TfiI	GAWTC	1 cut(s)	192
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	3 cut(s)	111, 391, 513
TspDTI	ATGAA	1 cut(s)	43
TspRI	CASTG	3 cut(s)	111, 391, 513
VpaK11BI	GGWCC	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	243
ZrmI	AGTACT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.