Rmu_sc0002706.1_g000011

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002706.1
OG0006472
Physical Location & Seq
Forward (+)
55448 .. 58998
3551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002706.1_g000011.1.cds

Sequence Viewer

Length: 417 bp
atgtgcaagacatgtgttgtcttggagctgagtgggtggtgcgagagatgtccacgaagtgatgaaggacgcacgcgggtcagtaatgggctggctcaagctggtatgatatggaagcctatcggttgggcgagtgtcttggaagacaaccatgacacaaggaagcgatcggtccaaagattgtccttttggttcgacgttgatgagatcagggtcgatttgccgccgtccgatagtatttacttcaccgttgggatcatcaacaagaagctcgatgtcgatcagttccagagcgttcattcttgccgcgacgggctttcgggttcgggttcgggttcttgcctcgggtcgttgaaacgggtcgttcagcttccatctccactggaagaagagataaagatgctacttactgagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

138

Amino Acids

15.44

Weight (kDa)

5.72

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 76, 309
AciI CCGC 3 cut(s) 76, 224, 307
AclWI GGATC 1 cut(s) 263
AdeI CACNNNGTG 1 cut(s) 59
AflIII ACRYGT 1 cut(s) 11
AgsI TTSAA 1 cut(s) 355
AluBI AGCT 4 cut(s) 28, 101, 271, 370
AluI AGCT 4 cut(s) 28, 101, 271, 370
AlwI GGATC 1 cut(s) 263
Ama87I CYCGRG 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 238
AvaI CYCGRG 1 cut(s) 344
AvaII GGWCC 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 150
BccI CCATC 1 cut(s) 382
BceAI ACGGC 1 cut(s) 211
BisI GCNGC 2 cut(s) 224, 307
BlsI GCNGC 2 cut(s) 225, 308
Bme18I GGWCC 1 cut(s) 172
BmeT110I CYCGRG 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 172
BmsI GCATC 1 cut(s) 390
BpiI GAAGAC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 343
Bse1I ACTGG 1 cut(s) 387
Bse8I GATNNNNATC 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 343
BseJI GATNNNNATC 1 cut(s) 279
BseMII CTCAG 2 cut(s) 20, 402
BseNI ACTGG 1 cut(s) 387
Bsh1236I CGCG 2 cut(s) 76, 309
Bsh1285I CGRYCG 1 cut(s) 170
BsiEI CGRYCG 1 cut(s) 170
BsiHKCI CYCGRG 1 cut(s) 344
BsoBI CYCGRG 1 cut(s) 344
Bsp143I GATC 4 cut(s) 167, 207, 255, 280
BspACI CCGC 3 cut(s) 76, 224, 307
BspCNI CTCAG 2 cut(s) 21, 403
BspFNI CGCG 2 cut(s) 76, 309
BspPI GGATC 1 cut(s) 263
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 1 cut(s) 343
BssMI GATC 4 cut(s) 167, 207, 255, 280
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 384
BstC8I GCNNGC 2 cut(s) 74, 93
BstDEI CTNAG 2 cut(s) 29, 411
BstFNI CGCG 2 cut(s) 76, 309
BstKTI GATC 4 cut(s) 170, 210, 258, 283
BstMBI GATC 4 cut(s) 167, 207, 255, 280
BstMCI CGRYCG 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 15
BstUI CGCG 2 cut(s) 76, 309
BstV2I GAAGAC 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 380
Cac8I GCNNGC 2 cut(s) 74, 93
Cfr13I GGNCC 1 cut(s) 172
CseI GACGC 1 cut(s) 78
CviAII CATG 2 cut(s) 12, 152
CviJI RGCY 8 cut(s) 28, 91, 95, 101, 118, 271, 316, 370
CviKI_1 RGCY 8 cut(s) 28, 91, 95, 101, 118, 271, 316, 370
DdeI CTNAG 2 cut(s) 29, 411
DpnI GATC 4 cut(s) 169, 209, 257, 282
DpnII GATC 4 cut(s) 167, 207, 255, 280
DraIII CACNNNGTG 1 cut(s) 59
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Eco47I GGWCC 1 cut(s) 172
Eco88I CYCGRG 1 cut(s) 344
FaeI CATG 2 cut(s) 15, 155
FaiI YATR 4 cut(s) 13, 107, 112, 153
FatI CATG 2 cut(s) 11, 151
FauI CCCGC 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 224, 307
Fsp4HI GCNGC 2 cut(s) 224, 307
GluI GCNGC 2 cut(s) 224, 307
HgaI GACGC 1 cut(s) 78
Hin1II CATG 2 cut(s) 15, 155
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 53
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 1 cut(s) 289
Hpy8I GTNNAC 1 cut(s) 53
Hpy99I CGWCG 2 cut(s) 200, 314
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 1 cut(s) 6
HpyF3I CTNAG 2 cut(s) 29, 411
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 2 cut(s) 15, 155
Kzo9I GATC 4 cut(s) 167, 207, 255, 280
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 5 cut(s) 77, 87, 196, 302, 368
LweI GCATC 1 cut(s) 390
MaeII ACGT 1 cut(s) 198
MalI GATC 4 cut(s) 169, 209, 257, 282
MboI GATC 4 cut(s) 167, 207, 255, 280
MboII GAAGA 3 cut(s) 155, 398, 401
MnlI CCTC 1 cut(s) 353
MvnI CGCG 2 cut(s) 76, 309
NdeII GATC 4 cut(s) 167, 207, 255, 280
NlaIII CATG 2 cut(s) 15, 155
NspI RCATGY 1 cut(s) 15
PciI ACATGT 1 cut(s) 11
PkrI GCNGC 2 cut(s) 225, 308
Ple19I CGATCG 1 cut(s) 170
PscI ACATGT 1 cut(s) 11
PspPI GGNCC 1 cut(s) 172
PvuI CGATCG 1 cut(s) 170
SatI GCNGC 2 cut(s) 224, 307
Sau3AI GATC 4 cut(s) 167, 207, 255, 280
Sau96I GGNCC 1 cut(s) 172
SetI ASST 5 cut(s) 30, 103, 201, 273, 372
SfaNI GCATC 1 cut(s) 390
SinI GGWCC 1 cut(s) 172
SmlI CTYRAG 1 cut(s) 96
SmoI CTYRAG 1 cut(s) 96
SsiI CCGC 3 cut(s) 76, 224, 307
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 1 cut(s) 201
TaqI TCGA 4 cut(s) 195, 216, 273, 279
TaqII GACCGA 1 cut(s) 160
TauI GCSGC 2 cut(s) 226, 309
TscAI CASTG 1 cut(s) 387
TspDTI ATGAA 2 cut(s) 78, 287
TspRI CASTG 1 cut(s) 387
VpaK11BI GGWCC 1 cut(s) 172
XceI RCATGY 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.