Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006472

Physical Location & Seq

Genomic Coordinates Reverse (-)

517512 .. 520598

Gene Structure 3087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g00690.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGAAATGTAACCCATGGTTTGGTCATTATCCATTGTCTGATTCTTCTGCCACCAACCAACCTGGACTTCAAGAAAAACCCATGATTTCCCATAAATACCACACCAACCTCAAAACAAATCCAAACCGTCCAAGCCTCTCAAATCCAACGGTACAGGCTCCTCTAAACCCCTCACGTCCTCAATATATACACCCAAAAATCTTTCCCGGAAAGTCCAACCTGCAAAGGATACTCAAGAACCCGAAAAGCACAGAACTTTGTCAAAACCCACACACACTCTCTATAGCACCCGACCCGAATATGGCACAGAACCCGAAACCCCATCTGGGTCTGATCCCGATCCTCCTCTTCTCTCTCTCCGTCCTCCCAAGTCTCTCTCTTTCTCTCTCTAACTCCCCACCCACAGTCTTCGACATTTTACCCGAATACGGCCTCCCCCGCGGCCTCTTACCGTCGTCAGTCTCCAACCACACGCTCTCCGACGACGGCCGATTCGTCGTCGTTTTGCCCAAGACCTGCTACATTCAGTTCGATTACTTGGTCTACTACGAAAAGACCATAACGGGCAAGCTCACATACGGGGCGATCACGGACTTGAAGGGGATTCAGGTCCAGAGGTTCTTGTTCTGGTTCGACGTCGACGAGATCAGGGTCGATTTGCCGCCCTCGGATAGCATTTACTTCACTGTTGGGATCATCAACAAGAAGCTCGACGTCGATCAATTTGAAAATGTCCGGTCTTGCCGTGACGGGTTATCGGGTTCTTGCGTCGGGTTGTTCAAACGGGGCATTCAGCTTCCAACCCCGGTGGAAGAAATTGAGATGCTAATTACCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

280

Amino Acids

31.26

Weight (kDa)

8.21

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19860
fragaria_vesca	FvH4_3g44860
malus_domestica	MD03G1007800.v1.1 MD11G1011000.v1.1
prunus_persica	Prupe.6G009800_v2.0.a1
pyrus_communis	pycom03g00800 pycom11g00690
rosa_chinensis	RchiOBHm_Chr5g0081571
rosa_laevigata	RLG00000036949 RLG00000036952
rosa_multiflora	Rmu_sc0002176.1_g000001 Rmu_sc0002245.1_g000027 Rmu_sc0002245.1_g000034 Rmu_sc0002706.1_g000006 Rmu_sc0002706.1_g000011 Rmu_sc0002706.1_g000017
rosa_roxburghii	Rroxscaffold_1G00001980
rosa_rugosa	Rorug05G0477400
rosa_samantha	Rh5AG528800 Rh5BG553500 Rh5BG553700 Rh5CG576500 Rh5CG576600 Rh5DG563700 Rh5DG563800
rosa_wichuraiana	Rw5G049200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	639, 717
Acc36I	ACCTGC	2 cut(s)	228, 524
AccB7I	CCANNNNNTGG	1 cut(s)	20
AccI	GTMKAC	2 cut(s)	543, 639
AccII	CGCG	1 cut(s)	441
AciI	CCGC	3 cut(s)	439, 441, 662
AclWI	GGATC	3 cut(s)	328, 334, 701
AcoI	YGGCCR	1 cut(s)	487
AcyI	GRCGYC	2 cut(s)	636, 714
AfaI	GTAC	1 cut(s)	153
AfiI	CCNNNNNNNGG	4 cut(s)	20, 301, 326, 428
AgsI	TTSAA	4 cut(s)	71, 598, 728, 781
AjiI	CACGTC	1 cut(s)	176
AjnI	CCWGG	1 cut(s)	61
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
AluBI	AGCT	3 cut(s)	571, 709, 796
AluI	AGCT	3 cut(s)	571, 709, 796
Alw26I	GTCTC	2 cut(s)	377, 466
AlwI	GGATC	3 cut(s)	328, 334, 701
AoxI	GGCC	3 cut(s)	430, 442, 487
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
AspS9I	GGNCC	1 cut(s)	610
AsuC2I	CCSGG	2 cut(s)	207, 806
AvaII	GGWCC	1 cut(s)	610
BbsI	GAAGAC	1 cut(s)	400
BccI	CCATC	1 cut(s)	330
BceAI	ACGGC	3 cut(s)	445, 502, 729
BciT130I	CCWGG	1 cut(s)	63
BciVI	GTATCC	1 cut(s)	222
BcnI	CCSGG	2 cut(s)	207, 806
BcoDI	GTCTC	2 cut(s)	377, 466
BfmI	CTRYAG	1 cut(s)	282
BfuAI	ACCTGC	2 cut(s)	228, 524
BfuI	GTATCC	1 cut(s)	222
BisI	GCNGC	2 cut(s)	442, 662
BlsI	GCNGC	2 cut(s)	443, 663
Bme1390I	CCNGG	3 cut(s)	63, 207, 806
Bme18I	GGWCC	1 cut(s)	610
BmgBI	CACGTC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	610
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	3 cut(s)	63, 207, 806
BmsI	GCATC	1 cut(s)	813
BpiI	GAAGAC	1 cut(s)	400
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	2 cut(s)	207, 806
BsaBI	GATNNNNATC	1 cut(s)	338
BsaHI	GRCGYC	2 cut(s)	636, 714
BsaJI	CCNNGG	4 cut(s)	14, 439, 666, 804
BsaWI	WCCGGW	1 cut(s)	735
BsaXI	ACNNNNNCTCC	2 cut(s)	461, 491
Bsc4I	CCNNNNNNNGG	4 cut(s)	20, 301, 326, 428
Bse8I	GATNNNNATC	1 cut(s)	338
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	4 cut(s)	14, 439, 666, 804
BseJI	GATNNNNATC	1 cut(s)	338
BseLI	CCNNNNNNNGG	4 cut(s)	20, 301, 326, 428
BseRI	GAGGAG	2 cut(s)	150, 335
BseX3I	CGGCCG	1 cut(s)	487
Bsh1236I	CGCG	1 cut(s)	441
Bsh1285I	CGRYCG	1 cut(s)	490
BshFI	GGCC	3 cut(s)	432, 444, 489
BsiEI	CGRYCG	1 cut(s)	490
BsiSI	CCGG	3 cut(s)	207, 736, 806
BslI	CCNNNNNNNGG	4 cut(s)	20, 301, 326, 428
BsmAI	GTCTC	2 cut(s)	377, 466
BsmI	GAATGC	1 cut(s)	789
BsnI	GGCC	3 cut(s)	432, 444, 489
Bsp143I	GATC	6 cut(s)	333, 339, 585, 645, 693, 718
Bsp19I	CCATGG	1 cut(s)	14
BspACI	CCGC	3 cut(s)	439, 441, 662
BspANI	GGCC	3 cut(s)	432, 444, 489
BspFNI	CGCG	1 cut(s)	441
BspLI	GGNNCC	1 cut(s)	159
BspMI	ACCTGC	2 cut(s)	228, 524
BspPI	GGATC	3 cut(s)	328, 334, 701
BssECI	CCNNGG	4 cut(s)	14, 439, 666, 804
BssMI	GATC	6 cut(s)	333, 339, 585, 645, 693, 718
BssNI	GRCGYC	2 cut(s)	636, 714
BssT1I	CCWWGG	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	5 cut(s)	128, 151, 406, 453, 688
Bst6I	CTCTTC	1 cut(s)	353
BstACI	GRCGYC	2 cut(s)	636, 714
BstC8I	GCNNGC	1 cut(s)	569
BstDSI	CCRYGG	2 cut(s)	14, 439
BstFNI	CGCG	1 cut(s)	441
BstKTI	GATC	6 cut(s)	336, 342, 588, 648, 696, 721
BstMAI	GTCTC	2 cut(s)	377, 466
BstMBI	GATC	6 cut(s)	333, 339, 585, 645, 693, 718
BstMCI	CGRYCG	1 cut(s)	490
BstMWI	GCNNNNNNNGC	1 cut(s)	438
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	3 cut(s)	61, 205, 804
BstSFI	CTRYAG	1 cut(s)	282
BstUI	CGCG	1 cut(s)	441
BstV2I	GAAGAC	1 cut(s)	400
BstZI	CGGCCG	1 cut(s)	487
BsuI	GTATCC	1 cut(s)	222
BsuRI	GGCC	3 cut(s)	432, 444, 489
BtgI	CCRYGG	2 cut(s)	14, 439
BtrI	CACGTC	1 cut(s)	176
BtsIMutI	CAGTG	1 cut(s)	684
BveI	ACCTGC	2 cut(s)	228, 524
Cac8I	GCNNGC	1 cut(s)	569
Cfr13I	GGNCC	1 cut(s)	610
Cfr42I	CCGCGG	1 cut(s)	442
CseI	GACGC	1 cut(s)	757
Csp6I	GTAC	1 cut(s)	152
CspCI	CAANNNNNGTGG	2 cut(s)	789, 824
CviAII	CATG	2 cut(s)	15, 82
CviJI	RGCY	8 cut(s)	135, 158, 432, 444, 489, 571, 709, 796
CviKI_1	RGCY	8 cut(s)	135, 158, 432, 444, 489, 571, 709, 796
CviQI	GTAC	1 cut(s)	152
DpnI	GATC	6 cut(s)	335, 341, 587, 647, 695, 720
DpnII	GATC	6 cut(s)	333, 339, 585, 645, 693, 718
EaeI	YGGCCR	1 cut(s)	487
EagI	CGGCCG	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
EclXI	CGGCCG	1 cut(s)	487
Eco130I	CCWWGG	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	610
Eco52I	CGGCCG	1 cut(s)	487
EcoRII	CCWGG	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	14
FaeI	CATG	2 cut(s)	18, 85
FaiI	YATR	9 cut(s)	16, 83, 93, 186, 188, 284, 302, 560, 577
FatI	CATG	2 cut(s)	14, 81
FauI	CCCGC	1 cut(s)	446
FblI	GTMKAC	2 cut(s)	543, 639
Fnu4HI	GCNGC	2 cut(s)	442, 662
Fsp4HI	GCNGC	2 cut(s)	442, 662
GluI	GCNGC	2 cut(s)	442, 662
HaeIII	GGCC	3 cut(s)	432, 444, 489
HapII	CCGG	3 cut(s)	207, 736, 806
HgaI	GACGC	1 cut(s)	757
Hin1I	GRCGYC	2 cut(s)	636, 714
Hin1II	CATG	2 cut(s)	18, 85
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HinfI	GANTC	3 cut(s)	41, 492, 604
HpaII	CCGG	3 cut(s)	207, 736, 806
Hpy166II	GTNNAC	2 cut(s)	544, 640
Hpy188I	TCNGA	4 cut(s)	40, 333, 481, 670
Hpy188III	TCNNGA	4 cut(s)	71, 235, 337, 613
Hpy8I	GTNNAC	2 cut(s)	544, 640
HpyAV	CCTTC	1 cut(s)	592
HpyCH4III	ACNGT	5 cut(s)	128, 151, 406, 453, 688
HpyCH4IV	ACGT	3 cut(s)	175, 636, 714
HpyCH4V	TGCA	1 cut(s)	223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	438
HpySE526I	ACGT	3 cut(s)	175, 636, 714
Hsp92I	GRCGYC	2 cut(s)	636, 714
Hsp92II	CATG	2 cut(s)	18, 85
KspI	CCGCGG	1 cut(s)	442
Kzo9I	GATC	6 cut(s)	333, 339, 585, 645, 693, 718
LmnI	GCTCC	1 cut(s)	163
LweI	GCATC	1 cut(s)	813
MaeII	ACGT	3 cut(s)	175, 636, 714
MaeIII	GTNAC	2 cut(s)	8, 746
MalI	GATC	6 cut(s)	335, 341, 587, 647, 695, 720
MboI	GATC	6 cut(s)	333, 339, 585, 645, 693, 718
MboII	GAAGA	4 cut(s)	36, 340, 400, 824
MluCI	AATT	3 cut(s)	722, 816, 828
MmeI	TCCRAC	5 cut(s)	170, 240, 489, 504, 824
MspA1I	CMGCKG	1 cut(s)	441
MspI	CCGG	3 cut(s)	207, 736, 806
MspR9I	CCNGG	3 cut(s)	63, 207, 806
Mva1269I	GAATGC	1 cut(s)	789
MvaI	CCWGG	1 cut(s)	63
MvnI	CGCG	1 cut(s)	441
MwoI	GCNNNNNNNGC	1 cut(s)	438
NciI	CCSGG	2 cut(s)	207, 806
NcoI	CCATGG	1 cut(s)	14
NdeII	GATC	6 cut(s)	333, 339, 585, 645, 693, 718
NlaIII	CATG	2 cut(s)	18, 85
NlaIV	GGNNCC	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	746
PcsI	WCGNNNNNNNCGW	2 cut(s)	492, 639
PctI	GAATGC	1 cut(s)	789
PfeI	GAWTC	3 cut(s)	41, 492, 604
PflMI	CCANNNNNTGG	1 cut(s)	20
PfoI	TCCNGGA	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	443, 663
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	610
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
SacII	CCGCGG	1 cut(s)	442
SalI	GTCGAC	1 cut(s)	638
SatI	GCNGC	2 cut(s)	442, 662
Sau3AI	GATC	6 cut(s)	333, 339, 585, 645, 693, 718
Sau96I	GGNCC	1 cut(s)	610
ScrFI	CCNGG	3 cut(s)	63, 207, 806
SfaNI	GCATC	1 cut(s)	813
SfcI	CTRYAG	1 cut(s)	282
Sfr303I	CCGCGG	1 cut(s)	442
SgrBI	CCGCGG	1 cut(s)	442
SgrDI	CGTCGACG	1 cut(s)	638
SinI	GGWCC	1 cut(s)	610
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	3 cut(s)	722, 816, 828
SsiI	CCGC	3 cut(s)	439, 441, 662
StyD4I	CCNGG	3 cut(s)	61, 205, 804
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	5 cut(s)	128, 151, 406, 453, 688
TaiI	ACGT	3 cut(s)	178, 639, 717
TaqI	TCGA	7 cut(s)	411, 531, 633, 639, 654, 711, 717
TasI	AATT	3 cut(s)	722, 816, 828
TauI	GCSGC	2 cut(s)	444, 664
TfiI	GAWTC	3 cut(s)	41, 492, 604
TscAI	CASTG	1 cut(s)	691
TseFI	GTSAC	1 cut(s)	746
Tsp45I	GTSAC	1 cut(s)	746
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	349, 605
TspRI	CASTG	1 cut(s)	691
Van91I	CCANNNNNTGG	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	610
XmiI	GTMKAC	2 cut(s)	543, 639
ZraI	GACGTC	2 cut(s)	637, 715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.