Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002176.1

Orthogroup ID

OG0006472

Physical Location & Seq

Genomic Coordinates Forward (+)

728 .. 2597

Gene Structure 1870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002176.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atggctccatttccaaaaccccatccgggtctaatcccaatcctcctcctcctcctctccaccgccgcaagcccctctctttctctctcctccgactcctccgcctcggtcttcgagctcttacccaaatatgggctccccagtgggctcctacccgcctcggtttccaactacacgttgtccgccgacgacggccgattcgtcgtcgttttggagaagccgtgctatatccagttcgagtacttggtgtactacgagacccacatcaccggaaagctgagctacggcgcgatcacggagctgaagggcattcaggtccaaagattgttcttttggttcgacgtcgatgagatcagggtcgatttgccgccgtccgatagtatttacttcaccgttgggatcatcaacaagaagctcgatgtcgatcagttccagagcgtccattcttgccgggacgggctttcgggttcgggttcgggttcggggtcggggtcttgcctcgggtcgttgaaacgggtcattcagcttccatctccactggaagaagagataaagatgctacttactgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

190

Amino Acids

20.69

Weight (kDa)

5.04

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19860
fragaria_vesca	FvH4_3g44860
malus_domestica	MD03G1007800.v1.1 MD11G1011000.v1.1
prunus_persica	Prupe.6G009800_v2.0.a1
pyrus_communis	pycom03g00800 pycom11g00690
rosa_chinensis	RchiOBHm_Chr5g0081571
rosa_laevigata	RLG00000036949 RLG00000036952
rosa_multiflora	Rmu_sc0002176.1_g000001 Rmu_sc0002245.1_g000027 Rmu_sc0002245.1_g000034 Rmu_sc0002706.1_g000006 Rmu_sc0002706.1_g000011 Rmu_sc0002706.1_g000017
rosa_roxburghii	Rroxscaffold_1G00001980
rosa_rugosa	Rorug05G0477400
rosa_samantha	Rh5AG528800 Rh5BG553500 Rh5BG553700 Rh5CG576500 Rh5CG576600 Rh5DG563700 Rh5DG563800
rosa_wichuraiana	Rw5G049200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	345
AccII	CGCG	1 cut(s)	290
AciI	CCGC	6 cut(s)	63, 66, 102, 156, 183, 368
AclWI	GGATC	1 cut(s)	407
AcoI	YGGCCR	1 cut(s)	193
AcuI	CTGAAG	1 cut(s)	323
AcyI	GRCGYC	1 cut(s)	342
AfaI	GTAC	2 cut(s)	242, 251
AfiI	CCNNNNNNNGG	3 cut(s)	26, 131, 132
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	1 cut(s)	511
AluBI	AGCT	6 cut(s)	118, 277, 282, 301, 415, 526
AluI	AGCT	6 cut(s)	118, 277, 282, 301, 415, 526
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	1 cut(s)	407
Ama87I	CYCGRG	1 cut(s)	500
AoxI	GGCC	1 cut(s)	193
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	316
AsuC2I	CCSGG	2 cut(s)	27, 452
AsuHPI	GGTGA	2 cut(s)	259, 382
AvaI	CYCGRG	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	316
BanII	GRGCYC	3 cut(s)	120, 138, 150
BbsI	GAAGAC	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	120
BccI	CCATC	2 cut(s)	30, 538
BceAI	ACGGC	4 cut(s)	205, 208, 301, 355
BcnI	CCSGG	2 cut(s)	27, 452
BcoDI	GTCTC	1 cut(s)	251
BisI	GCNGC	2 cut(s)	66, 368
BlpI	GCTNAGC	1 cut(s)	278
BlsI	GCNGC	2 cut(s)	67, 369
BmcAI	AGTACT	1 cut(s)	242
Bme1390I	CCNGG	2 cut(s)	27, 452
Bme18I	GGWCC	1 cut(s)	316
BmeT110I	CYCGRG	1 cut(s)	500
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	3 cut(s)	6, 137, 149
BmrFI	CCNGG	2 cut(s)	27, 452
BmrI	ACTGGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	546
BmuI	ACTGGG	1 cut(s)	135
BpiI	GAAGAC	1 cut(s)	103
Bpu1102I	GCTNAGC	1 cut(s)	278
BpuMI	CCSGG	2 cut(s)	27, 452
BsaBI	GATNNNNATC	1 cut(s)	423
BsaHI	GRCGYC	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	3 cut(s)	105, 159, 499
BsaWI	WCCGGW	1 cut(s)	269
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 131, 132
Bse1I	ACTGG	3 cut(s)	141, 232, 543
Bse8I	GATNNNNATC	1 cut(s)	423
BseDI	CCNNGG	3 cut(s)	105, 159, 499
BseGI	GGATG	1 cut(s)	22
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	3 cut(s)	26, 131, 132
BseMII	CTCAG	2 cut(s)	269, 558
BseNI	ACTGG	3 cut(s)	141, 232, 543
BseRI	GAGGAG	6 cut(s)	35, 38, 41, 44, 79, 88
BseX3I	CGGCCG	1 cut(s)	193
Bsh1236I	CGCG	1 cut(s)	290
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	1 cut(s)	195
BsiEI	CGRYCG	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	500
BsiSI	CCGG	3 cut(s)	26, 270, 451
BslFI	GGGAC	1 cut(s)	467
BslI	CCNNNNNNNGG	3 cut(s)	26, 131, 132
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	467
BsmI	GAATGC	1 cut(s)	309
BsnI	GGCC	1 cut(s)	195
Bso31I	GGTCTC	1 cut(s)	251
BsoBI	CYCGRG	1 cut(s)	500
Bsp1286I	GDGCHC	3 cut(s)	120, 138, 150
Bsp143I	GATC	4 cut(s)	291, 351, 399, 424
Bsp1720I	GCTNAGC	1 cut(s)	278
BspACI	CCGC	6 cut(s)	63, 66, 102, 156, 183, 368
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	2 cut(s)	270, 559
BspFNI	CGCG	1 cut(s)	290
BspLI	GGNNCC	3 cut(s)	6, 137, 149
BspPI	GGATC	1 cut(s)	407
BspTNI	GGTCTC	1 cut(s)	251
BsrI	ACTGG	3 cut(s)	141, 232, 543
BssECI	CCNNGG	3 cut(s)	105, 159, 499
BssMI	GATC	4 cut(s)	291, 351, 399, 424
BssNI	GRCGYC	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	1 cut(s)	540
BstACI	GRCGYC	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	2 cut(s)	278, 567
BstF5I	GGATG	1 cut(s)	22
BstFNI	CGCG	1 cut(s)	290
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	4 cut(s)	294, 354, 402, 427
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	4 cut(s)	291, 351, 399, 424
BstMCI	CGRYCG	1 cut(s)	196
BstSCI	CCNGG	2 cut(s)	25, 450
BstUI	CGCG	1 cut(s)	290
BstV2I	GAAGAC	1 cut(s)	103
BstZI	CGGCCG	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	148, 536
Cac8I	GCNNGC	1 cut(s)	70
CfoI	GCGC	1 cut(s)	290
Cfr13I	GGNCC	1 cut(s)	316
CseI	GACGC	1 cut(s)	427
Csp6I	GTAC	2 cut(s)	241, 250
CviQI	GTAC	2 cut(s)	241, 250
DdeI	CTNAG	2 cut(s)	278, 567
DpnI	GATC	4 cut(s)	293, 353, 401, 426
DpnII	GATC	4 cut(s)	291, 351, 399, 424
EaeI	YGGCCR	1 cut(s)	193
EagI	CGGCCG	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
EciI	GGCGGA	2 cut(s)	91, 172
Ecl136II	GAGCTC	1 cut(s)	118
EclXI	CGGCCG	1 cut(s)	193
Eco24I	GRGCYC	3 cut(s)	120, 138, 150
Eco31I	GGTCTC	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	316
Eco52I	CGGCCG	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	323
Eco88I	CYCGRG	1 cut(s)	500
EcoICRI	GAGCTC	1 cut(s)	118
EcoT38I	GRGCYC	3 cut(s)	120, 138, 150
FaiI	YATR	2 cut(s)	132, 228
FaqI	GGGAC	1 cut(s)	467
FauI	CCCGC	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	66, 368
FokI	GGATG	1 cut(s)	9
FriOI	GRGCYC	3 cut(s)	120, 138, 150
Fsp4HI	GCNGC	2 cut(s)	66, 368
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	2 cut(s)	66, 368
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	3 cut(s)	26, 270, 451
HgaI	GACGC	1 cut(s)	427
HhaI	GCGC	1 cut(s)	290
Hin1I	GRCGYC	1 cut(s)	342
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HinfI	GANTC	2 cut(s)	95, 198
HpaII	CCGG	3 cut(s)	26, 270, 451
HphI	GGTGA	2 cut(s)	259, 382
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	2 cut(s)	94, 376
Hpy188III	TCNNGA	1 cut(s)	433
Hpy8I	GTNNAC	1 cut(s)	250
Hpy99I	CGWCG	6 cut(s)	191, 194, 206, 209, 344, 347
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4IV	ACGT	2 cut(s)	176, 342
HpyF3I	CTNAG	2 cut(s)	278, 567
HpySE526I	ACGT	2 cut(s)	176, 342
Hsp92I	GRCGYC	1 cut(s)	342
HspAI	GCGC	1 cut(s)	288
Kzo9I	GATC	4 cut(s)	291, 351, 399, 424
LmnI	GCTCC	4 cut(s)	10, 141, 153, 298
LpnPI	CCDG	9 cut(s)	39, 154, 245, 283, 299, 340, 446, 464, 524
LweI	GCATC	1 cut(s)	546
MaeII	ACGT	2 cut(s)	176, 342
MalI	GATC	4 cut(s)	293, 353, 401, 426
MboI	GATC	4 cut(s)	291, 351, 399, 424
MboII	GAAGA	3 cut(s)	103, 554, 557
MhlI	GDGCHC	3 cut(s)	120, 138, 150
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	2 cut(s)	117, 192
MspI	CCGG	3 cut(s)	26, 270, 451
MspR9I	CCNGG	2 cut(s)	27, 452
Mva1269I	GAATGC	1 cut(s)	309
MvnI	CGCG	1 cut(s)	290
NciI	CCSGG	2 cut(s)	27, 452
NdeII	GATC	4 cut(s)	291, 351, 399, 424
NlaIV	GGNNCC	3 cut(s)	6, 137, 149
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PctI	GAATGC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	198
PkrI	GCNGC	2 cut(s)	67, 369
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	120
PspN4I	GGNNCC	3 cut(s)	6, 137, 149
PspPI	GGNCC	1 cut(s)	316
RsaI	GTAC	2 cut(s)	242, 251
RsaNI	GTAC	2 cut(s)	241, 250
SacI	GAGCTC	1 cut(s)	120
SatI	GCNGC	2 cut(s)	66, 368
Sau3AI	GATC	4 cut(s)	291, 351, 399, 424
Sau96I	GGNCC	1 cut(s)	316
ScaI	AGTACT	1 cut(s)	242
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	2 cut(s)	27, 452
SduI	GDGCHC	3 cut(s)	120, 138, 150
SetI	ASST	9 cut(s)	120, 179, 279, 284, 303, 318, 345, 417, 528
SfaNI	GCATC	1 cut(s)	546
SinI	GGWCC	1 cut(s)	316
SsiI	CCGC	6 cut(s)	63, 66, 102, 156, 183, 368
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	25, 450
TaaI	ACNGT	1 cut(s)	394
TaiI	ACGT	2 cut(s)	179, 345
TaqI	TCGA	7 cut(s)	114, 237, 339, 345, 360, 417, 423
TaqII	GACCGA	1 cut(s)	97
TatI	WGTACW	2 cut(s)	240, 249
TauI	GCSGC	2 cut(s)	68, 370
TfiI	GAWTC	1 cut(s)	198
TscAI	CASTG	2 cut(s)	148, 543
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	2 cut(s)	148, 543
VpaK11BI	GGWCC	1 cut(s)	316
ZraI	GACGTC	1 cut(s)	343
ZrmI	AGTACT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.