Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006472

Physical Location & Seq

Genomic Coordinates Forward (+)

81654152 .. 81659721

Gene Structure 5570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG576600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGACGGTCGATTTGCCGCCGTCCGATAGTATTTACTTCACCGTTGGGATCATCAACAAGAAGCTCGATGTCGATCAGTTCCAGAGCGTTCATTCTTGCCGCGACGGGCTTTCGGGTTCGGGTTCGGGTTCGGGTTCTTGCCTCGGGTCGTTGAAACGGGTCGTTCAGCTTCCATCTCCACTGGAAGAAGAGATAAAGATGCTACTTACTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

71

Amino Acids

7.61

Weight (kDa)

4.9

Isoelectric Point (pI)

65.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19860
fragaria_vesca	FvH4_3g44860
malus_domestica	MD03G1007800.v1.1 MD11G1011000.v1.1
prunus_persica	Prupe.6G009800_v2.0.a1
pyrus_communis	pycom03g00800 pycom11g00690
rosa_chinensis	RchiOBHm_Chr5g0081571
rosa_laevigata	RLG00000036949 RLG00000036952
rosa_multiflora	Rmu_sc0002176.1_g000001 Rmu_sc0002245.1_g000027 Rmu_sc0002245.1_g000034 Rmu_sc0002706.1_g000006 Rmu_sc0002706.1_g000011 Rmu_sc0002706.1_g000017
rosa_roxburghii	Rroxscaffold_1G00001980
rosa_rugosa	Rorug05G0477400
rosa_samantha	Rh5AG528800 Rh5BG553500 Rh5BG553700 Rh5CG576500 Rh5CG576600 Rh5DG563700 Rh5DG563800
rosa_wichuraiana	Rw5G049200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	102
AciI	CCGC	2 cut(s)	17, 100
AclWI	GGATC	1 cut(s)	56
AgsI	TTSAA	1 cut(s)	154
AluBI	AGCT	2 cut(s)	64, 169
AluI	AGCT	2 cut(s)	64, 169
AlwI	GGATC	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	143
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	31
AvaI	CYCGRG	1 cut(s)	143
BccI	CCATC	1 cut(s)	181
BceAI	ACGGC	1 cut(s)	4
BisI	GCNGC	2 cut(s)	17, 100
BlsI	GCNGC	2 cut(s)	18, 101
BmeT110I	CYCGRG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	189
BsaBI	GATNNNNATC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	186
Bse8I	GATNNNNATC	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	142
BseJI	GATNNNNATC	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	102
Bsh1285I	CGRYCG	1 cut(s)	9
BsiEI	CGRYCG	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	143
BsoBI	CYCGRG	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	48, 73
BspACI	CCGC	2 cut(s)	17, 100
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	102
BspPI	GGATC	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	2 cut(s)	48, 73
Bst4CI	ACNGT	2 cut(s)	7, 43
Bst6I	CTCTTC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	210
BstFNI	CGCG	1 cut(s)	102
BstKTI	GATC	2 cut(s)	51, 76
BstMBI	GATC	2 cut(s)	48, 73
BstMCI	CGRYCG	1 cut(s)	9
BstUI	CGCG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	179
CviJI	RGCY	3 cut(s)	64, 109, 169
CviKI_1	RGCY	3 cut(s)	64, 109, 169
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	2 cut(s)	50, 75
DpnII	GATC	2 cut(s)	48, 73
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	143
Fnu4HI	GCNGC	2 cut(s)	17, 100
Fsp4HI	GCNGC	2 cut(s)	17, 100
GluI	GCNGC	2 cut(s)	17, 100
HphI	GGTGA	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	1 cut(s)	82
Hpy99I	CGWCG	1 cut(s)	107
HpyCH4III	ACNGT	2 cut(s)	7, 43
HpyF3I	CTNAG	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	48, 73
LpnPI	CCDG	2 cut(s)	95, 167
LweI	GCATC	1 cut(s)	189
MalI	GATC	2 cut(s)	50, 75
MboI	GATC	2 cut(s)	48, 73
MboII	GAAGA	2 cut(s)	197, 200
MnlI	CCTC	1 cut(s)	152
MvnI	CGCG	1 cut(s)	102
NdeII	GATC	2 cut(s)	48, 73
PkrI	GCNGC	2 cut(s)	18, 101
SatI	GCNGC	2 cut(s)	17, 100
Sau3AI	GATC	2 cut(s)	48, 73
SetI	ASST	2 cut(s)	66, 171
SfaNI	GCATC	1 cut(s)	189
SsiI	CCGC	2 cut(s)	17, 100
TaaI	ACNGT	2 cut(s)	7, 43
TaqI	TCGA	3 cut(s)	9, 66, 72
TauI	GCSGC	2 cut(s)	19, 102
TscAI	CASTG	1 cut(s)	186
TspDTI	ATGAA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.