Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002245.1

Orthogroup ID

OG0006472

Physical Location & Seq

Genomic Coordinates Forward (+)

150326 .. 150835

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002245.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgctcctcttcttcctctccaccgccgcaagcccctctctttctctctccgactcctcttccgcctcggtcttcgagctcttacccgaatatgggcttcccagtgggatcttacccgccttggtttccaactacacgttgtctgccgacgacggccgattcgtcgtcgttttggagaaggcgtgctatattcagttcgagtacttggtgaactacgagacccggatcaccgggaagctgagctacggcgcgatcacggagctgaagggcattcaggtccaaagactgttcttttggttcgacgtcgatgagatcaggatcgatttgccgccgtccgatagtatttacttcaccgttgggagcatcaacaagaagctcgatgtcgatcagttccagagcgttctttcttgccgcgacgggctttcgggttcgggttcgggttcggtttcttgccttgggtcgttgaaacgggccattcaggtagtcactgctttattgattaaagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

169

Amino Acids

18.41

Weight (kDa)

4.76

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19860
fragaria_vesca	FvH4_3g44860
malus_domestica	MD03G1007800.v1.1 MD11G1011000.v1.1
prunus_persica	Prupe.6G009800_v2.0.a1
pyrus_communis	pycom03g00800 pycom11g00690
rosa_chinensis	RchiOBHm_Chr5g0081571
rosa_laevigata	RLG00000036949 RLG00000036952
rosa_multiflora	Rmu_sc0002176.1_g000001 Rmu_sc0002245.1_g000027 Rmu_sc0002245.1_g000034 Rmu_sc0002706.1_g000006 Rmu_sc0002706.1_g000011 Rmu_sc0002706.1_g000017
rosa_roxburghii	Rroxscaffold_1G00001980
rosa_rugosa	Rorug05G0477400
rosa_samantha	Rh5AG528800 Rh5BG553500 Rh5BG553700 Rh5CG576500 Rh5CG576600 Rh5DG563700 Rh5DG563800
rosa_wichuraiana	Rw5G049200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	306
AccII	CGCG	2 cut(s)	251, 414
AciI	CCGC	6 cut(s)	24, 27, 63, 117, 329, 412
AclWI	GGATC	3 cut(s)	116, 233, 326
AcoI	YGGCCR	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	284
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	2 cut(s)	92, 93
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	466
AluBI	AGCT	5 cut(s)	79, 238, 243, 262, 376
AluI	AGCT	5 cut(s)	79, 238, 243, 262, 376
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	3 cut(s)	116, 233, 326
AoxI	GGCC	2 cut(s)	154, 471
ArsI	GACNNNNNNTTYG	4 cut(s)	143, 175, 276, 308
AspLEI	GCGC	1 cut(s)	251
AspS9I	GGNCC	2 cut(s)	277, 471
AsuC2I	CCSGG	2 cut(s)	223, 232
AsuHPI	GGTGA	3 cut(s)	220, 220, 343
AvaII	GGWCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	81
BarI	GAAGNNNNNNTAC	2 cut(s)	227, 259
BbsI	GAAGAC	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	81
BceAI	ACGGC	3 cut(s)	169, 262, 316
BcnI	CCSGG	2 cut(s)	223, 232
BcoDI	GTCTC	1 cut(s)	212
BisI	GCNGC	3 cut(s)	27, 329, 412
BlpI	GCTNAGC	1 cut(s)	239
BlsI	GCNGC	3 cut(s)	28, 330, 413
BmcAI	AGTACT	1 cut(s)	203
Bme1390I	CCNGG	2 cut(s)	223, 232
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	277, 471
BmrFI	CCNGG	2 cut(s)	223, 232
BmrI	ACTGGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	372
BmuI	ACTGGG	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	64
Bpu1102I	GCTNAGC	1 cut(s)	239
BpuMI	CCSGG	2 cut(s)	223, 232
Bsa29I	ATCGAT	1 cut(s)	321
BsaBI	GATNNNNATC	2 cut(s)	317, 384
BsaHI	GRCGYC	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	3 cut(s)	66, 120, 454
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 93
Bse1I	ACTGG	1 cut(s)	102
Bse8I	GATNNNNATC	2 cut(s)	317, 384
BseCI	ATCGAT	1 cut(s)	321
BseDI	CCNNGG	3 cut(s)	66, 120, 454
BseJI	GATNNNNATC	2 cut(s)	317, 384
BseLI	CCNNNNNNNGG	2 cut(s)	92, 93
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	1 cut(s)	102
BseRI	GAGGAG	1 cut(s)	46
BseX3I	CGGCCG	1 cut(s)	154
Bsh1236I	CGCG	2 cut(s)	251, 414
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	2 cut(s)	156, 473
BshVI	ATCGAT	1 cut(s)	321
BsiEI	CGRYCG	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	2 cut(s)	223, 231
BslI	CCNNNNNNNGG	2 cut(s)	92, 93
BsmAI	GTCTC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	270
BsnI	GGCC	2 cut(s)	156, 473
Bso31I	GGTCTC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	6 cut(s)	108, 225, 252, 312, 318, 385
Bsp1720I	GCTNAGC	1 cut(s)	239
BspACI	CCGC	6 cut(s)	24, 27, 63, 117, 329, 412
BspANI	GGCC	2 cut(s)	156, 473
BspCNI	CTCAG	1 cut(s)	231
BspDI	ATCGAT	1 cut(s)	321
BspFNI	CGCG	2 cut(s)	251, 414
BspPI	GGATC	3 cut(s)	116, 233, 326
BspTNI	GGTCTC	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	102
BssECI	CCNNGG	3 cut(s)	66, 120, 454
BssMI	GATC	6 cut(s)	108, 225, 252, 312, 318, 385
BssNI	GRCGYC	1 cut(s)	303
BssT1I	CCWWGG	2 cut(s)	120, 454
Bst4CI	ACNGT	2 cut(s)	288, 355
Bst6I	CTCTTC	2 cut(s)	14, 64
BstACI	GRCGYC	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	31, 184
BstDEI	CTNAG	1 cut(s)	239
BstFNI	CGCG	2 cut(s)	251, 414
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	6 cut(s)	111, 228, 255, 315, 321, 388
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	6 cut(s)	108, 225, 252, 312, 318, 385
BstMCI	CGRYCG	1 cut(s)	157
BstSCI	CCNGG	2 cut(s)	221, 230
BstUI	CGCG	2 cut(s)	251, 414
BstV2I	GAAGAC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	108
BstYI	RGATCY	1 cut(s)	108
BstZI	CGGCCG	1 cut(s)	154
Bsu15I	ATCGAT	1 cut(s)	321
BsuRI	GGCC	2 cut(s)	156, 473
BsuTUI	ATCGAT	1 cut(s)	321
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	2 cut(s)	109, 486
Cac8I	GCNNGC	2 cut(s)	31, 184
CfoI	GCGC	1 cut(s)	251
Cfr13I	GGNCC	2 cut(s)	277, 471
ClaI	ATCGAT	1 cut(s)	321
Csp6I	GTAC	1 cut(s)	202
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	6 cut(s)	110, 227, 254, 314, 320, 387
DpnII	GATC	6 cut(s)	108, 225, 252, 312, 318, 385
EaeI	YGGCCR	1 cut(s)	154
EagI	CGGCCG	1 cut(s)	154
Eam1104I	CTCTTC	2 cut(s)	14, 64
EarI	CTCTTC	2 cut(s)	14, 64
EciI	GGCGGA	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	79
EclXI	CGGCCG	1 cut(s)	154
Eco130I	CCWWGG	2 cut(s)	120, 454
Eco24I	GRGCYC	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	277
Eco52I	CGGCCG	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	79
EcoT14I	CCWWGG	2 cut(s)	120, 454
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	2 cut(s)	120, 454
FaiI	YATR	2 cut(s)	93, 189
FauI	CCCGC	1 cut(s)	124
Fnu4HI	GCNGC	3 cut(s)	27, 329, 412
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	3 cut(s)	27, 329, 412
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	3 cut(s)	27, 329, 412
HaeIII	GGCC	2 cut(s)	156, 473
HapII	CCGG	2 cut(s)	223, 231
HhaI	GCGC	1 cut(s)	251
Hin1I	GRCGYC	1 cut(s)	303
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HinfI	GANTC	2 cut(s)	53, 159
HpaII	CCGG	2 cut(s)	223, 231
HphI	GGTGA	3 cut(s)	220, 220, 343
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	52, 337
Hpy188III	TCNNGA	2 cut(s)	316, 394
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	7 cut(s)	152, 155, 167, 170, 305, 308, 419
HpyAV	CCTTC	2 cut(s)	172, 259
HpyCH4III	ACNGT	2 cut(s)	288, 355
HpyCH4IV	ACGT	2 cut(s)	137, 303
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	2 cut(s)	137, 303
Hsp92I	GRCGYC	1 cut(s)	303
HspAI	GCGC	1 cut(s)	249
Kzo9I	GATC	6 cut(s)	108, 225, 252, 312, 318, 385
LmnI	GCTCC	3 cut(s)	9, 259, 360
LpnPI	CCDG	7 cut(s)	115, 236, 244, 260, 301, 407, 464
LweI	GCATC	1 cut(s)	372
MaeII	ACGT	2 cut(s)	137, 303
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	6 cut(s)	110, 227, 254, 314, 320, 387
MboI	GATC	6 cut(s)	108, 225, 252, 312, 318, 385
MboII	GAAGA	3 cut(s)	4, 51, 64
MflI	RGATCY	1 cut(s)	108
MhlI	GDGCHC	1 cut(s)	81
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	2 cut(s)	75, 153
MnlI	CCTC	5 cut(s)	17, 26, 46, 67, 76
MseI	TTAA	1 cut(s)	501
MspI	CCGG	2 cut(s)	223, 231
MspR9I	CCNGG	2 cut(s)	223, 232
Mva1269I	GAATGC	1 cut(s)	270
MvnI	CGCG	2 cut(s)	251, 414
NciI	CCSGG	2 cut(s)	223, 232
NdeII	GATC	6 cut(s)	108, 225, 252, 312, 318, 385
NmuCI	GTSAC	1 cut(s)	484
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PctI	GAATGC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	159
PkrI	GCNGC	3 cut(s)	28, 330, 413
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
Psp124BI	GAGCTC	1 cut(s)	81
PspPI	GGNCC	2 cut(s)	277, 471
PsuI	RGATCY	1 cut(s)	108
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	3 cut(s)	27, 329, 412
Sau3AI	GATC	6 cut(s)	108, 225, 252, 312, 318, 385
Sau96I	GGNCC	2 cut(s)	277, 471
ScaI	AGTACT	1 cut(s)	203
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	2 cut(s)	223, 232
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	9 cut(s)	81, 140, 240, 245, 264, 279, 306, 378, 483
SfaNI	GCATC	1 cut(s)	372
SinI	GGWCC	1 cut(s)	277
SsiI	CCGC	6 cut(s)	24, 27, 63, 117, 329, 412
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	221, 230
StyI	CCWWGG	2 cut(s)	120, 454
TaaI	ACNGT	2 cut(s)	288, 355
TaiI	ACGT	2 cut(s)	140, 306
TaqI	TCGA	7 cut(s)	75, 198, 300, 306, 321, 378, 384
TaqII	GACCGA	1 cut(s)	58
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	3 cut(s)	29, 331, 414
TfiI	GAWTC	1 cut(s)	159
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	2 cut(s)	109, 493
TseFI	GTSAC	1 cut(s)	484
Tsp45I	GTSAC	1 cut(s)	484
TspGWI	ACGGA	1 cut(s)	272
TspRI	CASTG	2 cut(s)	109, 493
VpaK11BI	GGWCC	1 cut(s)	277
ZraI	GACGTC	1 cut(s)	304
ZrmI	AGTACT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.