Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002706.1

Orthogroup ID

OG0006472

Physical Location & Seq

Genomic Coordinates Forward (+)

81980 .. 83533

Gene Structure 1554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002706.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atgacgatcggccgttttggagaaaccgtgctgttttcagttcgagtacttggtgtactgcgagaccggcatcaccggaaagctgagctgaagggcattcaggtccgaagactgttcttttggttcgacgtcaatgagatcagggtcgatttgccgccgtccgatggtatttgcttcaccgttgggatcatcaacaagaagctcgatgtcgatcagttccagagcgttcattcttgccgggacgggctttcgggttccgattcgggttcttgcctcgggtcgttgaaacgggtcattcagcttccatctccactggaagaagagataaagatgctacttattacggagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

116

Amino Acids

13.11

Weight (kDa)

7.77

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19860
fragaria_vesca	FvH4_3g44860
malus_domestica	MD03G1007800.v1.1 MD11G1011000.v1.1
prunus_persica	Prupe.6G009800_v2.0.a1
pyrus_communis	pycom03g00800 pycom11g00690
rosa_chinensis	RchiOBHm_Chr5g0081571
rosa_laevigata	RLG00000036949 RLG00000036952
rosa_multiflora	Rmu_sc0002176.1_g000001 Rmu_sc0002245.1_g000027 Rmu_sc0002245.1_g000034 Rmu_sc0002706.1_g000006 Rmu_sc0002706.1_g000011 Rmu_sc0002706.1_g000017
rosa_roxburghii	Rroxscaffold_1G00001980
rosa_rugosa	Rorug05G0477400
rosa_samantha	Rh5AG528800 Rh5BG553500 Rh5BG553700 Rh5CG576500 Rh5CG576600 Rh5DG563700 Rh5DG563800
rosa_wichuraiana	Rw5G049200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	132
AciI	CCGC	1 cut(s)	155
AclWI	GGATC	1 cut(s)	194
AcoI	YGGCCR	1 cut(s)	10
AcuI	CTGAAG	1 cut(s)	110
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	2 cut(s)	48, 57
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	1 cut(s)	286
AluBI	AGCT	4 cut(s)	83, 88, 202, 301
AluI	AGCT	4 cut(s)	83, 88, 202, 301
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	275
AoxI	GGCC	1 cut(s)	10
ArsI	GACNNNNNNTTYG	2 cut(s)	102, 134
AspS9I	GGNCC	1 cut(s)	103
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	2 cut(s)	65, 169
AvaI	CYCGRG	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	115
BccI	CCATC	2 cut(s)	158, 313
BceAI	ACGGC	1 cut(s)	142
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	57
BisI	GCNGC	1 cut(s)	155
BlpI	GCTNAGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	156
BmcAI	AGTACT	1 cut(s)	48
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	1 cut(s)	103
BmeT110I	CYCGRG	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	239
BmsI	GCATC	2 cut(s)	79, 321
BpiI	GAAGAC	1 cut(s)	115
Bpu1102I	GCTNAGC	1 cut(s)	84
BpuMI	CCSGG	1 cut(s)	239
BsaBI	GATNNNNATC	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	274
BsaWI	WCCGGW	1 cut(s)	75
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	318
Bse8I	GATNNNNATC	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	274
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	318
BseX3I	CGGCCG	1 cut(s)	10
Bsh1285I	CGRYCG	2 cut(s)	9, 13
BshFI	GGCC	1 cut(s)	12
BsiEI	CGRYCG	2 cut(s)	9, 13
BsiHKCI	CYCGRG	1 cut(s)	275
BsiSI	CCGG	3 cut(s)	67, 76, 238
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	96
BsnI	GGCC	1 cut(s)	12
Bso31I	GGTCTC	1 cut(s)	57
BsoBI	CYCGRG	1 cut(s)	275
Bsp143I	GATC	4 cut(s)	6, 138, 186, 211
Bsp1720I	GCTNAGC	1 cut(s)	84
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	1 cut(s)	12
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	256
BspPI	GGATC	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	57
BsrFI	RCCGGY	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	318
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	274
BssMI	GATC	4 cut(s)	6, 138, 186, 211
BssNI	GRCGYC	1 cut(s)	129
Bst4CI	ACNGT	3 cut(s)	28, 114, 181
Bst6I	CTCTTC	1 cut(s)	315
BstACI	GRCGYC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	84
BstKTI	GATC	4 cut(s)	9, 141, 189, 214
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	4 cut(s)	6, 138, 186, 211
BstMCI	CGRYCG	2 cut(s)	9, 13
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	237
BstV2I	GAAGAC	1 cut(s)	115
BstZI	CGGCCG	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	311
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	103
Csp6I	GTAC	2 cut(s)	47, 56
CviJI	RGCY	6 cut(s)	12, 83, 88, 202, 247, 301
CviKI_1	RGCY	6 cut(s)	12, 83, 88, 202, 247, 301
CviQI	GTAC	2 cut(s)	47, 56
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	4 cut(s)	8, 140, 188, 213
DpnII	GATC	4 cut(s)	6, 138, 186, 211
EaeI	YGGCCR	1 cut(s)	10
EagI	CGGCCG	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
EclXI	CGGCCG	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	103
Eco52I	CGGCCG	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	275
FaqI	GGGAC	1 cut(s)	254
Fnu4HI	GCNGC	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	155
GluI	GCNGC	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	12
HapII	CCGG	3 cut(s)	67, 76, 238
Hin1I	GRCGYC	1 cut(s)	129
HinfI	GANTC	1 cut(s)	260
HpaII	CCGG	3 cut(s)	67, 76, 238
HphI	GGTGA	2 cut(s)	65, 169
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188I	TCNGA	3 cut(s)	107, 163, 259
Hpy188III	TCNNGA	1 cut(s)	220
Hpy8I	GTNNAC	1 cut(s)	56
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	3 cut(s)	28, 114, 181
HpyCH4IV	ACGT	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	1 cut(s)	84
HpySE526I	ACGT	1 cut(s)	129
Hsp92I	GRCGYC	1 cut(s)	129
Kzo9I	GATC	4 cut(s)	6, 138, 186, 211
LpnPI	CCDG	7 cut(s)	80, 86, 89, 127, 233, 251, 299
LweI	GCATC	2 cut(s)	79, 321
MaeII	ACGT	1 cut(s)	129
MalI	GATC	4 cut(s)	8, 140, 188, 213
MboI	GATC	4 cut(s)	6, 138, 186, 211
MboII	GAAGA	3 cut(s)	120, 329, 332
MnlI	CCTC	1 cut(s)	284
MspI	CCGG	3 cut(s)	67, 76, 238
MspR9I	CCNGG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	67
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	4 cut(s)	6, 138, 186, 211
NlaIV	GGNNCC	1 cut(s)	256
PctI	GAATGC	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	156
Ple19I	CGATCG	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	103
PvuI	CGATCG	1 cut(s)	9
RsaI	GTAC	2 cut(s)	48, 57
RsaNI	GTAC	2 cut(s)	47, 56
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	4 cut(s)	6, 138, 186, 211
Sau96I	GGNCC	1 cut(s)	103
ScaI	AGTACT	1 cut(s)	48
ScrFI	CCNGG	1 cut(s)	239
SetI	ASST	6 cut(s)	85, 90, 105, 132, 204, 303
SfaNI	GCATC	2 cut(s)	79, 321
SinI	GGWCC	1 cut(s)	103
SsiI	CCGC	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	237
TaaI	ACNGT	3 cut(s)	28, 114, 181
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	5 cut(s)	43, 126, 147, 204, 210
TatI	WGTACW	2 cut(s)	46, 55
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	1 cut(s)	260
TscAI	CASTG	1 cut(s)	318
TspDTI	ATGAA	1 cut(s)	218
TspRI	CASTG	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	103
ZraI	GACGTC	1 cut(s)	130
ZrmI	AGTACT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.