Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0000763

Physical Location & Seq

Genomic Coordinates Reverse (-)

29596986 .. 29602828

Gene Structure 5843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1218300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2382 bp

ATGCTGCAGAATATTGTTGGGAAGCTCGCAGGTCACCAGGAAAATGGAAATCATGGAAAGATCAATGGGACTGTGGTGCTGATGAAGAAGAGTCTTTTGGACTTCAACGACATCAACTCTTCGGTTCTCGATCGCGCACATGAGTTGATCGGCCAAGGGGTTTGCCTGCAGCGCATCAGTGCCGTTCATGCTGATGATGCCGGAAATGGGTTGAAGGGGAAACTTGGAAAGCCAGCATACTTGGAAGATTGGATTACCACCATCACATCTTTAACACCGGGAGAGTCTGCATTCGAGGTTACATTTGACCATGAAGAGGAAGTAGGAGTTCCAGGAGCAATCTTAATAAAAAATAATCACCACAGTGAGTTCTTCCTCAAGACTGTCACTCTCGAAAATGTTCCCGGTGAGGACCGTCTACACTTCGTTTGCAACTCTTGGGTGTACCCTACGGAAAAATACACCAAAGACCGTGTTTTCTTCACCAACAAGACTTATCTTCCAAGTGAAACACCACTGCCGTTGCGCAAATACAGAGAAGAAGAACTAGTACATTTGAGAGGAGATGATGAAAAAGGAAAAGGAGAGCTCCAAGAATGGGACAGGGTTTATGACTATGATTGCTACAACGATTTGGGGAATCCTGATAAGGGTGCCAAATATGTCCGTCCTATTCTTGGAGGGTCTAGTGAGTACCCTTACCCTCGCCGTGGAAGAACTGGCCGACAAAAAACTAAGACAGATGAAAAAAGCGAGAGTCGTCTGCCGCTTGCTGAGAGCTTAAACATCTATGTGCCAAGGGATGAACGATTTGGCCACTTGAAGTTGTCAGACTTCCTGGTTTATGCCCTGAAATCCATAGCTCAGTTCATTAAACCGGAGCTAGAATCCTTGCTTGATCAAACTCCTAATGAGTTTGACAGCTTTGAAGATGTACTTAAACTCTACGAAGTAGGCATTCCATTGCCTGAAGGTTTATTAAAGCATATTGGAGACAGCATCCCCTCGGAGTTGTTCAAGGAGATCTTCCGAACTGATGATGCAAAGTTGCTCAAATTCCCAATGCCTCAAGTGATCAAAGAGGATAAGTCTGCTTGGAGGACTGATGAAGAATTTGCAAGGGAAATGCTGGCTGGAGTGAACCCTGTCAACATTCGTCGCCTCCAAGAGTTTCCGCCTGCAAGCAAGCTAGATCCAAAAGTTTACGGTGATCAAACCAGTACAATAACCGAAGAACATATAAAGAACAACTTGGATGGACTAAGTGTGGATGAGGCACTCAAGAACAACAAGTTATTCATACTAGACCATCATGATTCTCTGATGCCATACCTGAGGAGGATAAACTCAACTTCAAACAAGATCTACGGAAGCAGAACTCTTCTGTTCTTGCAAAATGATGGAACTTTGAAGCCATTGGTGATCGAACTGAGCTTGCCTCATCCCAATGGAGACCAATTCGGTTGCATTAGCAATGTCTACTCACCAGCAGAACAAGGTGTAGAAGGCTCCATATGGCAACTGGCTAAAGCTTATGTGGCTGTAAATGACTCTGGATACCATCAGCTTATCAGTCACTGGTTGAACACTCATGCAGCGAGTGAGCCAGTTGTAATTGCTACGAACAGGCAACTTAGCGTGGTTCACCCAATTTACAAACTTCTGCATCCTCATTTCCGTGACACGATGAATATCAATGCATTTGCCAGGCAAATCCTCATCAATGCTGGCGGTATCCTTGAGACGACAGTTTTCCCTGCTAGGTATGCCATGGAGCTGTCATCAGTTGTGTACAAGGATTGGAATTTCACCGAGCAAGCTCTCCCTGCAGATCTCATCAAAAGAGGAGTGGCGGTGAAGGATGCAAATTCTCCACACGGTCTTCGCTTACTGATTGAGGACTACCCCTATGCTGTCGATGGGATTGAAATCTGGTTTGCAATAAGAACATGGGTTGCAGACTACTGCTCTTTCTACTACAAGACCGACGACATAATCCAGAAAGACACCGAGCTCCAATCCTGGTGGAAGGAGCTAGTAGAGGAAGGCCACGGTGACAAAAAAGAAGAGCCCTGGTGGCCGAAAATGGAGACTCTCGAAGAGCCAGTCGAAATCTGCACAACCATCATATGGACTGCTTCTGCGCTCCATGCGGCTGTCAACTTCGGACAGTACCCTTACGCAGGGTACCTTCCCAACAGACCTACCATAAGCCGAAAATTCATGCCCGAAAAGGGAACTCCTGAATACGAAGAGCTCGAGTCCAACCCGGACAAGGCGTTCTTGAAAACAATCACTGCTCAGCTGCAGACAATGCTTGGCATTTCCCTCATTGAAATTTTGTCTAGGCACTCTACTGATGAAGCGTACTTAGGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0016165 GO:0016491 GO:0016701 GO:0016702 GO:0044424 GO:0044464 GO:0051213 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

794

Amino Acids

90.14

Weight (kDa)

5.38

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAT	PF01477	65 - 161	1.1e-22	PLAT/LH2 domain
Lipoxygenase	PF00305	174 - 793	2.1e-298	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55020
fragaria_vesca	FvH4_4g09530 FvH4_6g06090 FvH4_6g06090 FvH4_6g06090 FvH4_6g06100
malus_domestica	MD04G1204000.v1.1 MD04G1204100.v1.1 MD04G1204200.v1.1 MD04G1204500.v1.1 MD04G1204600.v1.1 MD09G1069500.v1.1 MD12G1218000.v1.1 MD12G1218200.v1.1 MD12G1218300.v1.1
prunus_persica	Prupe.6G324100_v2.0.a1 Prupe.6G324100_v2.0.a1 Prupe.6G324200_v2.0.a1 Prupe.6G324200_v2.0.a1 Prupe.6G324300_v2.0.a1 Prupe.6G324400_v2.0.a1 Prupe.6G324600_v2.0.a1 Prupe.6G324600_v2.0.a1
pyrus_communis	pycom04g18050 pycom04g18060 pycom12433g00060 pycom12g20350 pycom12g20380 pycom12g20390
rosa_chinensis	RchiOBHm_Chr3g0455091 RchiOBHm_Chr3g0455111 RchiOBHm_Chr3g0455121 RchiOBHm_Chr4g0404751
rosa_laevigata	RLG00000008903 RLG00000010665 RLG00000025386 RLG00000025387 RLG00000025389
rosa_multiflora	Rmu_co8490177.1_g000001 Rmu_sc0001179.1_g000031 Rmu_sc0002169.1_g000019 Rmu_sc0002169.1_g000023 Rmu_sc0002169.1_g000024 Rmu_sc0002502.1_g000004
rosa_roxburghii	Rroxscaffold_5G00348930 Rroxscaffold_6G00424550 Rroxscaffold_6G00424560 Rroxscaffold_6G00424570 Rroxscaffold_7G00160420 Rroxscaffold_7G00160500
rosa_rugosa	Rorug03G0004000 Rorug03G0004000 Rorug04G0049200
rosa_samantha	Rh3AG064600 Rh3AG064700 Rh3AG064800 Rh3BG066700 Rh3CG065100 Rh3CG065200 Rh3DG066300 Rh3DG066600 Rh3DG066700 Rh4AG124900 Rh4CG133100 Rh4DG118900
rosa_wichuraiana	Rw3G005050 Rw3G005060 Rw3G005070 Rw4G010130 Rw6G041270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	527
Acc36I	ACCTGC	1 cut(s)	20
Acc65I	GGTACC	1 cut(s)	2187
AccB1I	GGYRCC	2 cut(s)	653, 2187
AccB7I	CCANNNNNTGG	1 cut(s)	2130
AccI	GTMKAC	2 cut(s)	418, 1479
AccII	CGCG	1 cut(s)	135
AciI	CCGC	5 cut(s)	767, 1175, 1731, 1853, 2153
AclWI	GGATC	1 cut(s)	1187
AcoI	YGGCCR	4 cut(s)	151, 721, 814, 2078
AcsI	RAATTY	6 cut(s)	1055, 1112, 1804, 1867, 2219, 2337
AcuI	CTGAAG	1 cut(s)	990
AfaI	GTAC	9 cut(s)	446, 552, 695, 936, 1222, 1793, 2174, 2189, 2369
AhlI	ACTAGT	1 cut(s)	547
AjnI	CCWGG	6 cut(s)	36, 331, 837, 1706, 2021, 2072
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
AleI	CACNNNNGTG	1 cut(s)	363
AloI	GAACNNNNNNTCC	2 cut(s)	2264, 2296
Alw21I	GWGCWC	3 cut(s)	591, 2016, 2259
Alw26I	GTCTC	4 cut(s)	987, 1446, 1736, 2084
AlwI	GGATC	1 cut(s)	1187
AlwNI	CAGNNNCTG	1 cut(s)	1578
Ama87I	CYCGRG	1 cut(s)	2258
AoxI	GGCC	5 cut(s)	151, 721, 814, 2047, 2078
ApeKI	GCWGC	4 cut(s)	4, 169, 1595, 2305
ApoI	RAATTY	6 cut(s)	1055, 1112, 1804, 1867, 2219, 2337
ArsI	GACNNNNNNTTYG	2 cut(s)	2091, 2123
Asp700I	GAANNNNTTC	1 cut(s)	399
Asp718I	GGTACC	1 cut(s)	2187
AspLEI	GCGC	4 cut(s)	137, 174, 528, 2146
AspS9I	GGNCC	1 cut(s)	412
AsuC2I	CCSGG	3 cut(s)	279, 405, 2270
AvaI	CYCGRG	1 cut(s)	2258
AvaII	GGWCC	1 cut(s)	412
AxyI	CCTNAGG	1 cut(s)	1334
BalI	TGGCCA	1 cut(s)	816
BanI	GGYRCC	2 cut(s)	653, 2187
BanII	GRGCYC	4 cut(s)	591, 2016, 2073, 2259
BarI	GAAGNNNNNNTAC	2 cut(s)	534, 566
BbsI	GAAGAC	1 cut(s)	1874
Bbv12I	GWGCWC	3 cut(s)	591, 2016, 2259
BbvI	GCAGC	3 cut(s)	181, 1607, 2292
BccI	CCATC	7 cut(s)	269, 1250, 1317, 1394, 1569, 1913, 2132
BceAI	ACGGC	3 cut(s)	167, 505, 693
BciT130I	CCWGG	6 cut(s)	38, 333, 839, 1708, 2023, 2074
BciVI	GTATCC	2 cut(s)	1550, 1745
BclI	TGATCA	3 cut(s)	898, 1074, 1210
BcnI	CCSGG	3 cut(s)	279, 405, 2270
BcoDI	GTCTC	4 cut(s)	987, 1446, 1736, 2084
BcuI	ACTAGT	1 cut(s)	547
BfaI	CTAG	8 cut(s)	548, 687, 884, 1190, 1304, 1761, 2036, 2346
BfmI	CTRYAG	4 cut(s)	5, 167, 1827, 2306
BfuAI	ACCTGC	1 cut(s)	20
BfuI	GTATCC	2 cut(s)	1550, 1745
BglI	GCCNNNNNGGC	1 cut(s)	2077
BglII	AGATCT	3 cut(s)	1023, 1362, 1831
BisI	GCNGC	6 cut(s)	5, 170, 767, 1596, 2154, 2306
BlpI	GCTNAGC	1 cut(s)	2301
BlsI	GCNGC	6 cut(s)	6, 171, 768, 1597, 2155, 2307
Bme1390I	CCNGG	9 cut(s)	38, 279, 333, 405, 839, 1708, 2023, 2074, 2270
Bme18I	GGWCC	1 cut(s)	412
BmeT110I	CYCGRG	1 cut(s)	2258
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	3 cut(s)	655, 1510, 2189
BmrFI	CCNGG	9 cut(s)	38, 279, 333, 405, 839, 1708, 2023, 2074, 2270
BmsI	GCATC	7 cut(s)	183, 187, 1008, 1030, 1314, 1675, 1852
BpiI	GAAGAC	1 cut(s)	1874
BplI	GAGNNNNNCTC	2 cut(s)	1423, 1455
BpmI	CTGGAG	1 cut(s)	1155
Bpu1102I	GCTNAGC	1 cut(s)	2301
BpuEI	CTTGAG	4 cut(s)	362, 1053, 1265, 1760
BpuMI	CCSGG	3 cut(s)	279, 405, 2270
BsaBI	GATNNNNATC	2 cut(s)	1691, 1928
BsaI	GGTCTC	1 cut(s)	1446
BsaJI	CCNNGG	7 cut(s)	154, 709, 797, 1005, 1770, 2050, 2072
BsaWI	WCCGGW	1 cut(s)	877
BsaXI	ACNNNNNCTCC	2 cut(s)	1839, 1869
Bse1I	ACTGG	6 cut(s)	724, 1218, 1527, 1583, 1607, 2105
Bse21I	CCTNAGG	1 cut(s)	1334
Bse3DI	GCAATG	2 cut(s)	962, 1480
Bse8I	GATNNNNATC	2 cut(s)	1691, 1928
BseBI	CCWGG	6 cut(s)	38, 333, 839, 1708, 2023, 2074
BseDI	CCNNGG	7 cut(s)	154, 709, 797, 1005, 1770, 2050, 2072
BseGI	GGATG	7 cut(s)	808, 999, 1261, 1276, 1441, 1666, 1867
BseJI	GATNNNNATC	2 cut(s)	1691, 1928
BseMI	GCAATG	2 cut(s)	962, 1480
BseMII	CTCAG	5 cut(s)	765, 878, 1325, 1421, 2315
BseNI	ACTGG	6 cut(s)	724, 1218, 1527, 1583, 1607, 2105
BseRI	GAGGAG	3 cut(s)	576, 1351, 1860
BseXI	GCAGC	3 cut(s)	181, 1607, 2292
BsgI	GTGCAG	1 cut(s)	2101
Bsh1236I	CGCG	1 cut(s)	135
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	5 cut(s)	153, 723, 816, 2049, 2080
BshNI	GGYRCC	2 cut(s)	653, 2187
BsiEI	CGRYCG	1 cut(s)	133
BsiHKAI	GWGCWC	3 cut(s)	591, 2016, 2259
BsiHKCI	CYCGRG	1 cut(s)	2258
BsiSI	CCGG	5 cut(s)	201, 278, 405, 878, 2270
BslFI	GGGAC	2 cut(s)	82, 614
BsmAI	GTCTC	4 cut(s)	987, 1446, 1736, 2084
BsmBI	CGTCTC	1 cut(s)	1736
BsmFI	GGGAC	2 cut(s)	82, 614
BsmI	GAATGC	2 cut(s)	290, 957
BsnI	GGCC	5 cut(s)	153, 723, 816, 2049, 2080
Bso31I	GGTCTC	1 cut(s)	1446
BsoBI	CYCGRG	1 cut(s)	2258
Bsp1286I	GDGCHC	4 cut(s)	591, 2016, 2073, 2259
Bsp1407I	TGTACA	1 cut(s)	1791
Bsp1720I	GCTNAGC	1 cut(s)	2301
Bsp19I	CCATGG	1 cut(s)	1770
BspACI	CCGC	5 cut(s)	767, 1175, 1731, 1853, 2153
BspANI	GGCC	5 cut(s)	153, 723, 816, 2049, 2080
BspCNI	CTCAG	5 cut(s)	766, 877, 1326, 1422, 2314
BspFNI	CGCG	1 cut(s)	135
BspHI	TCATGA	1 cut(s)	1312
BspLI	GGNNCC	3 cut(s)	655, 1510, 2189
BspMAI	CTGCAG	4 cut(s)	9, 171, 1831, 2310
BspMI	ACCTGC	1 cut(s)	20
BspPI	GGATC	1 cut(s)	1187
BspQI	GCTCTTC	3 cut(s)	2061, 2094, 2247
BspT107I	GGYRCC	2 cut(s)	653, 2187
BspTNI	GGTCTC	1 cut(s)	1446
BsrDI	GCAATG	2 cut(s)	962, 1480
BsrGI	TGTACA	1 cut(s)	1791
BsrI	ACTGG	6 cut(s)	724, 1218, 1527, 1583, 1607, 2105
BssECI	CCNNGG	7 cut(s)	154, 709, 797, 1005, 1770, 2050, 2072
BssT1I	CCWWGG	3 cut(s)	154, 797, 1770
Bst2UI	CCWGG	6 cut(s)	38, 333, 839, 1708, 2023, 2074
Bst6I	CTCTTC	7 cut(s)	83, 124, 309, 1386, 2061, 2094, 2247
BstAPI	GCANNNNNTGC	1 cut(s)	2314
BstAUI	TGTACA	1 cut(s)	1791
BstDEI	CTNAG	9 cut(s)	735, 774, 864, 1262, 1334, 1430, 1634, 2301, 2371
BstDSI	CCRYGG	3 cut(s)	709, 1770, 2050
BstEII	GGTNACC	1 cut(s)	32
BstENI	CCTNNNNNAGG	1 cut(s)	2181
BstF5I	GGATG	7 cut(s)	808, 999, 1261, 1276, 1441, 1666, 1867
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	4 cut(s)	137, 174, 528, 2146
BstMAI	GTCTC	4 cut(s)	987, 1446, 1736, 2084
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	9 cut(s)	171, 188, 197, 1538, 1766, 1826, 2077, 2150, 2314
BstNI	CCWGG	6 cut(s)	38, 333, 839, 1708, 2023, 2074
BstPI	GGTNACC	1 cut(s)	32
BstSCI	CCNGG	9 cut(s)	36, 277, 331, 403, 837, 1706, 2021, 2072, 2268
BstSFI	CTRYAG	4 cut(s)	5, 167, 1827, 2306
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	3 cut(s)	181, 1607, 2292
BstV2I	GAAGAC	1 cut(s)	1874
BstX2I	RGATCY	4 cut(s)	1023, 1192, 1362, 1831
BstXI	CCANNNNNNTGG	1 cut(s)	44
BstYI	RGATCY	4 cut(s)	1023, 1192, 1362, 1831
Bsu36I	CCTNAGG	1 cut(s)	1334
BsuI	GTATCC	2 cut(s)	1550, 1745
BsuRI	GGCC	5 cut(s)	153, 723, 816, 2049, 2080
BtgI	CCRYGG	3 cut(s)	709, 1770, 2050
BtsCI	GGATG	7 cut(s)	808, 999, 1261, 1276, 1441, 1666, 1867
BtsI	GCAGTG	2 cut(s)	515, 2295
BtsIMutI	CAGTG	5 cut(s)	184, 370, 515, 1576, 2295
BveI	ACCTGC	1 cut(s)	20
CaiI	CAGNNNCTG	1 cut(s)	1578
CciI	TCATGA	1 cut(s)	1312
CfoI	GCGC	4 cut(s)	137, 174, 528, 2146
Cfr13I	GGNCC	1 cut(s)	412
Csp6I	GTAC	9 cut(s)	445, 551, 694, 935, 1221, 1792, 2173, 2188, 2368
CspCI	CAANNNNNGTGG	4 cut(s)	504, 539, 2006, 2041
CviQI	GTAC	9 cut(s)	445, 551, 694, 935, 1221, 1792, 2173, 2188, 2368
DdeI	CTNAG	9 cut(s)	735, 774, 864, 1262, 1334, 1430, 1634, 2301, 2371
EaeI	YGGCCR	4 cut(s)	151, 721, 814, 2078
Eam1104I	CTCTTC	7 cut(s)	83, 124, 309, 1386, 2061, 2094, 2247
EarI	CTCTTC	7 cut(s)	83, 124, 309, 1386, 2061, 2094, 2247
EciI	GGCGGA	1 cut(s)	1164
Ecl136II	GAGCTC	3 cut(s)	589, 2014, 2257
Eco130I	CCWWGG	3 cut(s)	154, 797, 1770
Eco24I	GRGCYC	4 cut(s)	591, 2016, 2073, 2259
Eco31I	GGTCTC	1 cut(s)	1446
Eco47I	GGWCC	1 cut(s)	412
Eco53kI	GAGCTC	3 cut(s)	589, 2014, 2257
Eco57I	CTGAAG	1 cut(s)	990
Eco81I	CCTNAGG	1 cut(s)	1334
Eco88I	CYCGRG	1 cut(s)	2258
Eco91I	GGTNACC	1 cut(s)	32
EcoICRI	GAGCTC	3 cut(s)	589, 2014, 2257
EcoNI	CCTNNNNNAGG	1 cut(s)	2181
EcoO65I	GGTNACC	1 cut(s)	32
EcoRII	CCWGG	6 cut(s)	36, 331, 837, 1706, 2021, 2072
EcoT14I	CCWWGG	3 cut(s)	154, 797, 1770
EcoT22I	ATGCAT	1 cut(s)	1702
EcoT38I	GRGCYC	4 cut(s)	591, 2016, 2073, 2259
ErhI	CCWWGG	3 cut(s)	154, 797, 1770
Esp3I	CGTCTC	1 cut(s)	1736
FalI	AAGNNNNNCTT	8 cut(s)	921, 953, 1010, 1042, 1235, 1267, 2267, 2299
FaqI	GGGAC	2 cut(s)	82, 614
FauNDI	CATATG	2 cut(s)	1514, 2129
FbaI	TGATCA	3 cut(s)	898, 1074, 1210
FblI	GTMKAC	2 cut(s)	418, 1479
Fnu4HI	GCNGC	6 cut(s)	5, 170, 767, 1596, 2154, 2306
FokI	GGATG	7 cut(s)	815, 986, 1268, 1283, 1428, 1653, 1874
FriOI	GRGCYC	4 cut(s)	591, 2016, 2073, 2259
Fsp4HI	GCNGC	6 cut(s)	5, 170, 767, 1596, 2154, 2306
FspBI	CTAG	8 cut(s)	548, 687, 884, 1190, 1304, 1761, 2036, 2346
FspI	TGCGCA	1 cut(s)	527
GlaI	GCGC	4 cut(s)	136, 173, 527, 2145
GluI	GCNGC	6 cut(s)	5, 170, 767, 1596, 2154, 2306
GsuI	CTGGAG	1 cut(s)	1155
HaeIII	GGCC	5 cut(s)	153, 723, 816, 2049, 2080
HapII	CCGG	5 cut(s)	201, 278, 405, 878, 2270
HhaI	GCGC	4 cut(s)	137, 174, 528, 2146
Hin6I	GCGC	4 cut(s)	135, 172, 526, 2144
HinP1I	GCGC	4 cut(s)	135, 172, 526, 2144
HincII	GTYRAC	2 cut(s)	1150, 2161
HindII	GTYRAC	2 cut(s)	1150, 2161
HindIII	AAGCTT	1 cut(s)	1530
HinfI	GANTC	9 cut(s)	91, 284, 640, 757, 887, 1316, 1550, 2092, 2261
HpaII	CCGG	5 cut(s)	201, 278, 405, 878, 2270
Hpy166II	GTNNAC	9 cut(s)	419, 445, 1141, 1150, 1204, 1480, 1645, 1792, 2161
Hpy188I	TCNGA	5 cut(s)	832, 1009, 1031, 1323, 2168
Hpy8I	GTNNAC	9 cut(s)	419, 445, 1141, 1150, 1204, 1480, 1645, 1792, 2161
Hpy99I	CGWCG	2 cut(s)	1161, 1991
HpyAV	CCTTC	7 cut(s)	208, 965, 1499, 1852, 2023, 2039, 2201
HpyF10VI	GCNNNNNNNGC	9 cut(s)	171, 188, 197, 1538, 1766, 1826, 2077, 2150, 2314
HpyF3I	CTNAG	9 cut(s)	735, 774, 864, 1262, 1334, 1430, 1634, 2301, 2371
HspAI	GCGC	4 cut(s)	135, 172, 526, 2144
KpnI	GGTACC	1 cut(s)	2191
Ksp22I	TGATCA	3 cut(s)	898, 1074, 1210
LguI	GCTCTTC	3 cut(s)	2061, 2094, 2247
LmnI	GCTCC	8 cut(s)	335, 594, 880, 1514, 1774, 2019, 2032, 2151
Lsp1109I	GCAGC	3 cut(s)	181, 1607, 2292
LweI	GCATC	7 cut(s)	183, 187, 1008, 1030, 1314, 1675, 1852
MaeI	CTAG	8 cut(s)	548, 687, 884, 1190, 1304, 1761, 2036, 2346
MaeIII	GTNAC	6 cut(s)	32, 298, 385, 1574, 1679, 2054
MflI	RGATCY	4 cut(s)	1023, 1192, 1362, 1831
MhlI	GDGCHC	4 cut(s)	591, 2016, 2073, 2259
MlsI	TGGCCA	1 cut(s)	816
MluCI	AATT	9 cut(s)	1055, 1112, 1457, 1614, 1650, 1804, 1867, 2219, 2337
MluNI	TGGCCA	1 cut(s)	816
MlyI	GAGTC	6 cut(s)	100, 293, 766, 1544, 2086, 2270
MmeI	TCCRAC	1 cut(s)	2289
Mox20I	TGGCCA	1 cut(s)	816
Mph1103I	ATGCAT	1 cut(s)	1702
MroXI	GAANNNNTTC	1 cut(s)	399
MscI	TGGCCA	1 cut(s)	816
MseI	TTAA	6 cut(s)	272, 344, 782, 873, 939, 980
MslI	CAYNNNNRTG	5 cut(s)	192, 363, 791, 1446, 1677
Msp20I	TGGCCA	1 cut(s)	816
MspA1I	CMGCKG	1 cut(s)	2305
MspI	CCGG	5 cut(s)	201, 278, 405, 878, 2270
MspR9I	CCNGG	9 cut(s)	38, 279, 333, 405, 839, 1708, 2023, 2074, 2270
Mva1269I	GAATGC	2 cut(s)	290, 957
MvaI	CCWGG	6 cut(s)	38, 333, 839, 1708, 2023, 2074
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	9 cut(s)	171, 188, 197, 1538, 1766, 1826, 2077, 2150, 2314
NciI	CCSGG	3 cut(s)	279, 405, 2270
NcoI	CCATGG	1 cut(s)	1770
NdeI	CATATG	2 cut(s)	1514, 2129
NlaIV	GGNNCC	3 cut(s)	655, 1510, 2189
NmuCI	GTSAC	5 cut(s)	32, 385, 1574, 1679, 2054
NsbI	TGCGCA	1 cut(s)	527
NsiI	ATGCAT	1 cut(s)	1702
OliI	CACNNNNGTG	1 cut(s)	363
PaeR7I	CTCGAG	1 cut(s)	2258
PagI	TCATGA	1 cut(s)	1312
PciSI	GCTCTTC	3 cut(s)	2061, 2094, 2247
PcsI	WCGNNNNNNNCGW	1 cut(s)	2256
PctI	GAATGC	2 cut(s)	290, 957
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	3 cut(s)	640, 887, 1316
PflMI	CCANNNNNTGG	1 cut(s)	2130
PfoI	TCCNGGA	1 cut(s)	331
PkrI	GCNGC	6 cut(s)	6, 171, 768, 1597, 2155, 2307
Ple19I	CGATCG	1 cut(s)	133
PleI	GAGTC	6 cut(s)	99, 292, 765, 1544, 2086, 2269
PpsI	GAGTC	6 cut(s)	99, 292, 765, 1544, 2086, 2269
Psp124BI	GAGCTC	3 cut(s)	591, 2016, 2259
Psp6I	CCWGG	6 cut(s)	36, 331, 837, 1706, 2021, 2072
PspEI	GGTNACC	1 cut(s)	32
PspGI	CCWGG	6 cut(s)	36, 331, 837, 1706, 2021, 2072
PspN4I	GGNNCC	3 cut(s)	655, 1510, 2189
PspPI	GGNCC	1 cut(s)	412
PspXI	VCTCGAGB	1 cut(s)	2258
PstI	CTGCAG	4 cut(s)	9, 171, 1831, 2310
PstNI	CAGNNNCTG	1 cut(s)	1578
PsuI	RGATCY	4 cut(s)	1023, 1192, 1362, 1831
PvuI	CGATCG	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	2305
RsaI	GTAC	9 cut(s)	446, 552, 695, 936, 1222, 1793, 2174, 2189, 2369
RsaNI	GTAC	9 cut(s)	445, 551, 694, 935, 1221, 1792, 2173, 2188, 2368
RseI	CAYNNNNRTG	5 cut(s)	192, 363, 791, 1446, 1677
SacI	GAGCTC	3 cut(s)	591, 2016, 2259
SapI	GCTCTTC	3 cut(s)	2061, 2094, 2247
SaqAI	TTAA	6 cut(s)	272, 344, 782, 873, 939, 980
SatI	GCNGC	6 cut(s)	5, 170, 767, 1596, 2154, 2306
Sau96I	GGNCC	1 cut(s)	412
SchI	GAGTC	6 cut(s)	100, 293, 766, 1544, 2086, 2270
ScrFI	CCNGG	9 cut(s)	38, 279, 333, 405, 839, 1708, 2023, 2074, 2270
SduI	GDGCHC	4 cut(s)	591, 2016, 2073, 2259
SfaNI	GCATC	7 cut(s)	183, 187, 1008, 1030, 1314, 1675, 1852
SfcI	CTRYAG	4 cut(s)	5, 167, 1827, 2306
Sfr274I	CTCGAG	1 cut(s)	2258
SinI	GGWCC	1 cut(s)	412
SlaI	CTCGAG	1 cut(s)	2258
SmiMI	CAYNNNNRTG	5 cut(s)	192, 363, 791, 1446, 1677
SmlI	CTYRAG	5 cut(s)	377, 1068, 1280, 1739, 2258
SmoI	CTYRAG	5 cut(s)	377, 1068, 1280, 1739, 2258
SpeI	ACTAGT	1 cut(s)	547
Sse9I	AATT	9 cut(s)	1055, 1112, 1457, 1614, 1650, 1804, 1867, 2219, 2337
SsiI	CCGC	5 cut(s)	767, 1175, 1731, 1853, 2153
SspI	AATATT	1 cut(s)	13
SspMI	CTAG	8 cut(s)	548, 687, 884, 1190, 1304, 1761, 2036, 2346
SstI	GAGCTC	3 cut(s)	591, 2016, 2259
StyD4I	CCNGG	9 cut(s)	36, 277, 331, 403, 837, 1706, 2021, 2072, 2268
StyI	CCWWGG	3 cut(s)	154, 797, 1770
TaqI	TCGA	8 cut(s)	129, 294, 393, 1425, 1917, 2097, 2109, 2259
TaqII	GACCGA	1 cut(s)	2000
TasI	AATT	9 cut(s)	1055, 1112, 1457, 1614, 1650, 1804, 1867, 2219, 2337
TatI	WGTACW	4 cut(s)	550, 934, 1220, 1791
TauI	GCSGC	2 cut(s)	769, 2156
TfiI	GAWTC	3 cut(s)	640, 887, 1316
Tru1I	TTAA	6 cut(s)	272, 344, 782, 873, 939, 980
Tru9I	TTAA	6 cut(s)	272, 344, 782, 873, 939, 980
TscAI	CASTG	5 cut(s)	184, 370, 522, 1583, 2302
TseFI	GTSAC	5 cut(s)	32, 385, 1574, 1679, 2054
TseI	GCWGC	4 cut(s)	4, 169, 1595, 2305
Tsp45I	GTSAC	5 cut(s)	32, 385, 1574, 1679, 2054
TspGWI	ACGGA	4 cut(s)	467, 656, 1383, 1667
TspRI	CASTG	5 cut(s)	184, 370, 522, 1583, 2302
Van91I	CCANNNNNTGG	1 cut(s)	2130
VpaK11BI	GGWCC	1 cut(s)	412
XagI	CCTNNNNNAGG	1 cut(s)	2181
XapI	RAATTY	6 cut(s)	1055, 1112, 1804, 1867, 2219, 2337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1519
XhoI	CTCGAG	1 cut(s)	2258
XmiI	GTMKAC	2 cut(s)	418, 1479
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	8 cut(s)	548, 687, 884, 1190, 1304, 1761, 2036, 2346
Zsp2I	ATGCAT	1 cut(s)	1702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.