Rmu_sc0002169.1_g000019

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002169.1
Physical Location & Seq
Forward (+)
90069 .. 91515
1447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002169.1_g000019.1.cds

Sequence Viewer

Length: 1278 bp
atgccatatgtgaggctgataaacaaggatactcagcacaagatctatgctagcaggactctccttctcttgagaagtgatggaacgttgaagccactggcgattgagttgagcttgcctcatcctgataaagatgaactgggctgcactagcaaagtatacacaccagctgaacaaggtgtagaaagcttcatatggcaactagctaaagcttatgtggctgtaaatgactccggatatcatcaacttattagtcactggttgaaaactcacgcagtgatcgagccatttataattgctaccaacaggcagctgagtgtgcttcacccaatttacaaacttttacatcctcatttccgtgacaccatgaatattaatgcacaagccaggcaactcctcatcaatgctggtgggattttggagatgacatgttttccatcccagtatgcattggagatgtcatcggcggtttacaaggattgggttttccctgagcaagctctccctgcagatctcctcaagagaggagtggcggtcaaggatgaaagttgtccacacggtcttcgcttactgatagaggactacccatttgctgttgatgggcttcagatttggtccgcaataaaaacttgggtggaagagtattgcaatttctactgcaagagtgatgacatggtccaaaaagaccctgaactccagttctggtggaaggaacttgtagagaagggtcacggtgacttaaaagacaagctgtggtggcctaaaatgcagactcgcaaagacctagtcgaaacatgcactatcatcatatggattgcttcagctctccatgcagctgtcaactttggacagtaccctttcgcagggtaccttccaaaccgccccactgttagccgaagattcatgcccgaagaaggaactcctgaatatgaggagctcaagcagaaccctgataaggctttcttgaaaacaattactgctcagcttcagaccctgctcggcgtttccctcatcgaaattctgtccaggcatgctagtgatgaggtgtatctggggcagagggacagtctcgagtggacaactgacaaggaggtgttagaagcatttgggagatttgggaagaaactggctgaaatagagaatggaattgaaattaggaaccagaataagaatctgaagaaccgagttggaccggtgaagatgccctacactttgctctaccctactagtgaagaaggacttactggcaagggaattccaaacagtatctcgatctga

Protein Analysis

425

Amino Acids

48.56

Weight (kDa)

6.21

Isoelectric Point (pI)

44.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 293
Acc65I GGTACC 1 cut(s) 867
AccB1I GGYRCC 1 cut(s) 867
AccI GTMKAC 1 cut(s) 159
AccIII TCCGGA 1 cut(s) 233
AciI CCGC 4 cut(s) 467, 533, 618, 880
AclI AACGTT 1 cut(s) 86
AcsI RAATTY 2 cut(s) 1017, 1254
AcuI CTGAAG 4 cut(s) 590, 804, 971, 1196
AdeI CACNNNGTG 1 cut(s) 277
AfaI GTAC 2 cut(s) 854, 869
AfiI CCNNNNNNNGG 3 cut(s) 863, 914, 955
AflIII ACRYGT 1 cut(s) 428
AgeI ACCGGT 1 cut(s) 1192
AgsI TTSAA 4 cut(s) 91, 265, 967, 1151
AhlI ACTAGT 1 cut(s) 1226
AjnI CCWGG 2 cut(s) 386, 1025
Alw21I GWGCWC 1 cut(s) 939
Alw26I GTCTC 1 cut(s) 1073
AlwNI CAGNNNCTG 1 cut(s) 994
Ama87I CYCGRG 1 cut(s) 1070
Aor13HI TCCGGA 1 cut(s) 233
AoxI GGCC 1 cut(s) 758
ApeKI GCWGC 3 cut(s) 144, 310, 833
ApoI RAATTY 2 cut(s) 1017, 1254
ArsI GACNNNNNNTTYG 4 cut(s) 572, 604, 771, 803
AseI ATTAAT 1 cut(s) 375
AsiGI ACCGGT 1 cut(s) 1192
Asp718I GGTACC 1 cut(s) 867
AspS9I GGNCC 3 cut(s) 615, 676, 1190
AsuHPI GGTGA 3 cut(s) 317, 746, 1207
AsuNHI GCTAGC 1 cut(s) 50
AvaI CYCGRG 1 cut(s) 1070
AvaII GGWCC 3 cut(s) 615, 676, 1190
BanI GGYRCC 1 cut(s) 867
BanII GRGCYC 1 cut(s) 939
BarI GAAGNNNNNNTAC 2 cut(s) 1190, 1222
BbsI GAAGAC 1 cut(s) 554
Bbv12I GWGCWC 1 cut(s) 939
BbvI GCAGC 3 cut(s) 131, 322, 845
BccI CCATC 3 cut(s) 74, 445, 593
BciT130I CCWGG 2 cut(s) 388, 1027
BciVI GTATCC 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 1073
BcuI ACTAGT 1 cut(s) 1226
BfaI CTAG 6 cut(s) 51, 150, 203, 785, 1035, 1227
BfmI CTRYAG 1 cut(s) 507
BfuI GTATCC 1 cut(s) 22
BglII AGATCT 2 cut(s) 42, 511
BisI GCNGC 3 cut(s) 145, 311, 834
BlpI GCTNAGC 1 cut(s) 981
BlsI GCNGC 3 cut(s) 146, 312, 835
Bme1390I CCNGG 2 cut(s) 388, 1027
Bme18I GGWCC 3 cut(s) 615, 676, 1190
BmeT110I CYCGRG 1 cut(s) 1070
BmgT120I GGNCC 3 cut(s) 615, 676, 1190
BmiI GGNNCC 2 cut(s) 869, 1160
BmrFI CCNGG 2 cut(s) 388, 1027
BmrI ACTGGG 2 cut(s) 149, 436
BmsI GCATC 1 cut(s) 1191
BmtI GCTAGC 1 cut(s) 54
BmuI ACTGGG 2 cut(s) 149, 436
BpiI GAAGAC 1 cut(s) 554
BplI GAGNNNNNCTC 2 cut(s) 103, 135
BpmI CTGGAG 1 cut(s) 680
Bpu10I CCTNAGC 1 cut(s) 492
Bpu1102I GCTNAGC 1 cut(s) 981
BpuEI CTTGAG 3 cut(s) 91, 503, 923
BsaWI WCCGGW 2 cut(s) 233, 1192
BsaXI ACNNNNNCTCC 2 cut(s) 519, 549
Bsc4I CCNNNNNNNGG 3 cut(s) 863, 914, 955
Bse118I RCCGGY 1 cut(s) 1192
Bse1I ACTGG 7 cut(s) 102, 144, 263, 442, 697, 1131, 1249
BseAI TCCGGA 1 cut(s) 233
BseBI CCWGG 2 cut(s) 388, 1027
BseGI GGATG 4 cut(s) 121, 346, 437, 547
BseLI CCNNNNNNNGG 3 cut(s) 863, 914, 955
BseMII CTCAG 4 cut(s) 47, 305, 483, 995
BseNI ACTGG 7 cut(s) 102, 144, 263, 442, 697, 1131, 1249
BseRI GAGGAG 4 cut(s) 386, 506, 540, 947
BseXI GCAGC 3 cut(s) 131, 322, 845
BsgI GTGCAG 1 cut(s) 130
BshFI GGCC 1 cut(s) 760
BshNI GGYRCC 1 cut(s) 867
BshTI ACCGGT 1 cut(s) 1192
BsiHKAI GWGCWC 1 cut(s) 939
BsiHKCI CYCGRG 1 cut(s) 1070
BsiSI CCGG 2 cut(s) 234, 1193
BslFI GGGAC 1 cut(s) 1076
BslI CCNNNNNNNGG 3 cut(s) 863, 914, 955
BsmAI GTCTC 1 cut(s) 1073
BsmFI GGGAC 1 cut(s) 1076
BsnI GGCC 1 cut(s) 760
BsoBI CYCGRG 1 cut(s) 1070
Bsp1286I GDGCHC 1 cut(s) 939
Bsp13I TCCGGA 1 cut(s) 233
Bsp143I GATC 4 cut(s) 42, 279, 511, 1272
Bsp1720I GCTNAGC 1 cut(s) 981
BspACI CCGC 4 cut(s) 467, 533, 618, 880
BspANI GGCC 1 cut(s) 760
BspCNI CTCAG 4 cut(s) 46, 306, 484, 994
BspEI TCCGGA 1 cut(s) 233
BspLI GGNNCC 2 cut(s) 869, 1160
BspMAI CTGCAG 1 cut(s) 511
BspOI GCTAGC 1 cut(s) 54
BspT107I GGYRCC 1 cut(s) 867
BsrFI RCCGGY 1 cut(s) 1192
BsrI ACTGG 7 cut(s) 102, 144, 263, 442, 697, 1131, 1249
BssAI RCCGGY 1 cut(s) 1192
BssMI GATC 4 cut(s) 42, 279, 511, 1272
BssNAI GTATAC 1 cut(s) 160
Bst1107I GTATAC 1 cut(s) 160
Bst2UI CCWGG 2 cut(s) 388, 1027
Bst4CI ACNGT 6 cut(s) 560, 734, 852, 889, 1067, 1265
Bst6I CTCTTC 1 cut(s) 633
BstC8I GCNNGC 4 cut(s) 52, 116, 498, 1032
BstDEI CTNAG 4 cut(s) 33, 314, 492, 981
BstENI CCTNNNNNAGG 1 cut(s) 861
BstF5I GGATG 4 cut(s) 121, 346, 437, 547
BstKTI GATC 4 cut(s) 45, 282, 514, 1275
BstMAI GTCTC 1 cut(s) 1073
BstMBI GATC 4 cut(s) 42, 279, 511, 1272
BstMWI GCNNNNNNNGC 7 cut(s) 150, 218, 319, 506, 757, 766, 830
BstNI CCWGG 2 cut(s) 388, 1027
BstNSI RCATGY 3 cut(s) 432, 798, 1034
BstSCI CCNGG 2 cut(s) 386, 1025
BstSFI CTRYAG 1 cut(s) 507
BstV1I GCAGC 3 cut(s) 131, 322, 845
BstV2I GAAGAC 1 cut(s) 554
BstX2I RGATCY 2 cut(s) 42, 511
BstYI RGATCY 2 cut(s) 42, 511
BstZ17I GTATAC 1 cut(s) 160
BsuI GTATCC 1 cut(s) 22
BsuRI GGCC 1 cut(s) 760
BtsCI GGATG 4 cut(s) 121, 346, 437, 547
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 4 cut(s) 95, 256, 282, 885
Cac8I GCNNGC 4 cut(s) 52, 116, 498, 1032
CaiI CAGNNNCTG 1 cut(s) 994
Cfr10I RCCGGY 1 cut(s) 1192
Cfr13I GGNCC 3 cut(s) 615, 676, 1190
Csp6I GTAC 2 cut(s) 853, 868
CspAI ACCGGT 1 cut(s) 1192
CspCI CAANNNNNGTGG 2 cut(s) 391, 426
CviAII CATG 7 cut(s) 367, 429, 673, 795, 830, 904, 1031
CviQI GTAC 2 cut(s) 853, 868
DdeI CTNAG 4 cut(s) 33, 314, 492, 981
DpnI GATC 4 cut(s) 44, 281, 513, 1274
DpnII GATC 4 cut(s) 42, 279, 511, 1272
DraIII CACNNNGTG 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 633
EarI CTCTTC 1 cut(s) 633
Ecl136II GAGCTC 1 cut(s) 937
Eco24I GRGCYC 1 cut(s) 939
Eco32I GATATC 1 cut(s) 239
Eco47I GGWCC 3 cut(s) 615, 676, 1190
Eco53kI GAGCTC 1 cut(s) 937
Eco57I CTGAAG 4 cut(s) 590, 804, 971, 1196
Eco88I CYCGRG 1 cut(s) 1070
EcoICRI GAGCTC 1 cut(s) 937
EcoNI CCTNNNNNAGG 1 cut(s) 861
EcoRI GAATTC 1 cut(s) 1254
EcoRII CCWGG 2 cut(s) 386, 1025
EcoRV GATATC 1 cut(s) 239
EcoT22I ATGCAT 1 cut(s) 451
EcoT38I GRGCYC 1 cut(s) 939
FaeI CATG 7 cut(s) 370, 432, 676, 798, 833, 907, 1034
FalI AAGNNNNNCTT 4 cut(s) 947, 979, 1224, 1256
FaqI GGGAC 1 cut(s) 1076
FatI CATG 7 cut(s) 366, 428, 672, 794, 829, 903, 1030
FauNDI CATATG 3 cut(s) 7, 194, 809
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 3 cut(s) 145, 311, 834
FokI GGATG 4 cut(s) 108, 333, 424, 554
FriOI GRGCYC 1 cut(s) 939
Fsp4HI GCNGC 3 cut(s) 145, 311, 834
FspBI CTAG 6 cut(s) 51, 150, 203, 785, 1035, 1227
GluI GCNGC 3 cut(s) 145, 311, 834
GsuI CTGGAG 1 cut(s) 680
HaeIII GGCC 1 cut(s) 760
HapII CCGG 2 cut(s) 234, 1193
Hin1II CATG 7 cut(s) 370, 432, 676, 798, 833, 907, 1034
HincII GTYRAC 1 cut(s) 841
HindII GTYRAC 1 cut(s) 841
HindIII AAGCTT 2 cut(s) 187, 210
HinfI GANTC 5 cut(s) 58, 230, 772, 900, 1171
HpaII CCGG 2 cut(s) 234, 1193
HphI GGTGA 3 cut(s) 317, 746, 1207
Hpy166II GTNNAC 5 cut(s) 160, 472, 554, 841, 1077
Hpy188I TCNGA 4 cut(s) 609, 990, 1176, 1277
Hpy188III TCNNGA 8 cut(s) 70, 125, 234, 520, 923, 964, 1070, 1270
Hpy8I GTNNAC 5 cut(s) 160, 472, 554, 841, 1077
HpyAV CCTTC 6 cut(s) 74, 703, 718, 881, 908, 1229
HpyCH4III ACNGT 6 cut(s) 560, 734, 852, 889, 1067, 1265
HpyCH4IV ACGT 1 cut(s) 86
HpyCH4V TGCA 9 cut(s) 147, 380, 449, 509, 648, 660, 769, 798, 833
HpyF10VI GCNNNNNNNGC 7 cut(s) 150, 218, 319, 506, 757, 766, 830
HpyF3I CTNAG 4 cut(s) 33, 314, 492, 981
HpySE526I ACGT 1 cut(s) 86
Hsp92II CATG 7 cut(s) 370, 432, 676, 798, 833, 907, 1034
Kpn2I TCCGGA 1 cut(s) 233
KpnI GGTACC 1 cut(s) 871
Kzo9I GATC 4 cut(s) 42, 279, 511, 1272
LmnI GCTCC 1 cut(s) 934
Lsp1109I GCAGC 3 cut(s) 131, 322, 845
LweI GCATC 1 cut(s) 1191
MaeI CTAG 6 cut(s) 51, 150, 203, 785, 1035, 1227
MaeII ACGT 1 cut(s) 86
MaeIII GTNAC 4 cut(s) 254, 359, 728, 734
MalI GATC 4 cut(s) 44, 281, 513, 1274
MboI GATC 4 cut(s) 42, 279, 511, 1272
MboII GAAGA 8 cut(s) 554, 650, 909, 923, 1132, 1189, 1210, 1244
MflI RGATCY 2 cut(s) 42, 511
MhlI GDGCHC 1 cut(s) 939
MluCI AATT 8 cut(s) 294, 330, 649, 972, 1017, 1146, 1152, 1254
MlyI GAGTC 3 cut(s) 52, 224, 766
MmeI TCCRAC 1 cut(s) 1168
Mph1103I ATGCAT 1 cut(s) 451
MroI TCCGGA 1 cut(s) 233
MseI TTAA 2 cut(s) 375, 740
MslI CAYNNNNRTG 2 cut(s) 357, 1035
MspA1I CMGCKG 3 cut(s) 170, 313, 836
MspI CCGG 2 cut(s) 234, 1193
MspR9I CCNGG 2 cut(s) 388, 1027
MvaI CCWGG 2 cut(s) 388, 1027
MwoI GCNNNNNNNGC 7 cut(s) 150, 218, 319, 506, 757, 766, 830
NdeI CATATG 3 cut(s) 7, 194, 809
NdeII GATC 4 cut(s) 42, 279, 511, 1272
NheI GCTAGC 1 cut(s) 50
NlaIII CATG 7 cut(s) 370, 432, 676, 798, 833, 907, 1034
NlaIV GGNNCC 2 cut(s) 869, 1160
NmeAIII GCCGAG 1 cut(s) 978
NmuCI GTSAC 4 cut(s) 254, 359, 728, 734
NsiI ATGCAT 1 cut(s) 451
NspI RCATGY 3 cut(s) 432, 798, 1034
PaeI GCATGC 1 cut(s) 1034
PaeR7I CTCGAG 1 cut(s) 1070
PciI ACATGT 1 cut(s) 428
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PfeI GAWTC 2 cut(s) 900, 1171
PflFI GACNNNGTC 2 cut(s) 674, 785
PinAI ACCGGT 1 cut(s) 1192
PkrI GCNGC 3 cut(s) 146, 312, 835
PleI GAGTC 3 cut(s) 52, 224, 766
PpsI GAGTC 3 cut(s) 52, 224, 766
PscI ACATGT 1 cut(s) 428
PshBI ATTAAT 1 cut(s) 375
PsiI TTATAA 1 cut(s) 293
Psp124BI GAGCTC 1 cut(s) 939
Psp1406I AACGTT 1 cut(s) 86
Psp6I CCWGG 2 cut(s) 386, 1025
PspGI CCWGG 2 cut(s) 386, 1025
PspN4I GGNNCC 2 cut(s) 869, 1160
PspPI GGNCC 3 cut(s) 615, 676, 1190
PstI CTGCAG 1 cut(s) 511
PstNI CAGNNNCTG 1 cut(s) 994
PsuI RGATCY 2 cut(s) 42, 511
PsyI GACNNNGTC 2 cut(s) 674, 785
PvuII CAGCTG 3 cut(s) 170, 313, 836
RsaI GTAC 2 cut(s) 854, 869
RsaNI GTAC 2 cut(s) 853, 868
RseI CAYNNNNRTG 2 cut(s) 357, 1035
SacI GAGCTC 1 cut(s) 939
SaqAI TTAA 2 cut(s) 375, 740
SatI GCNGC 3 cut(s) 145, 311, 834
Sau3AI GATC 4 cut(s) 42, 279, 511, 1272
Sau96I GGNCC 3 cut(s) 615, 676, 1190
SchI GAGTC 3 cut(s) 52, 224, 766
ScrFI CCNGG 2 cut(s) 388, 1027
SduI GDGCHC 1 cut(s) 939
SfaNI GCATC 1 cut(s) 1191
SfcI CTRYAG 1 cut(s) 507
Sfr274I CTCGAG 1 cut(s) 1070
SinI GGWCC 3 cut(s) 615, 676, 1190
SlaI CTCGAG 1 cut(s) 1070
SmiMI CAYNNNNRTG 2 cut(s) 357, 1035
SmlI CTYRAG 4 cut(s) 70, 518, 938, 1070
SmoI CTYRAG 4 cut(s) 70, 518, 938, 1070
SpeI ACTAGT 1 cut(s) 1226
SphI GCATGC 1 cut(s) 1034
Sse9I AATT 8 cut(s) 294, 330, 649, 972, 1017, 1146, 1152, 1254
SsiI CCGC 4 cut(s) 467, 533, 618, 880
SspI AATATT 1 cut(s) 373
SspMI CTAG 6 cut(s) 51, 150, 203, 785, 1035, 1227
SstI GAGCTC 1 cut(s) 939
StyD4I CCNGG 2 cut(s) 386, 1025
TaaI ACNGT 6 cut(s) 560, 734, 852, 889, 1067, 1265
TaiI ACGT 1 cut(s) 89
TaqI TCGA 5 cut(s) 282, 789, 1014, 1071, 1271
TasI AATT 8 cut(s) 294, 330, 649, 972, 1017, 1146, 1152, 1254
TfiI GAWTC 2 cut(s) 900, 1171
Tru1I TTAA 2 cut(s) 375, 740
Tru9I TTAA 2 cut(s) 375, 740
TscAI CASTG 4 cut(s) 102, 263, 282, 892
TseFI GTSAC 4 cut(s) 254, 359, 728, 734
TseI GCWGC 3 cut(s) 144, 310, 833
Tsp45I GTSAC 4 cut(s) 254, 359, 728, 734
TspDTI ATGAA 5 cut(s) 150, 181, 383, 558, 892
TspGWI ACGGA 1 cut(s) 347
TspRI CASTG 4 cut(s) 102, 263, 282, 892
Tth111I GACNNNGTC 2 cut(s) 674, 785
VpaK11BI GGWCC 3 cut(s) 615, 676, 1190
VspI ATTAAT 1 cut(s) 375
XagI CCTNNNNNAGG 1 cut(s) 861
XapI RAATTY 2 cut(s) 1017, 1254
XceI RCATGY 3 cut(s) 432, 798, 1034
XhoI CTCGAG 1 cut(s) 1070
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 6 cut(s) 51, 150, 203, 785, 1035, 1227
Zsp2I ATGCAT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.