Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8490177.1

Orthogroup ID

OG0000763

Physical Location & Seq

Genomic Coordinates Reverse (-)

614 .. 2105

Gene Structure 1492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8490177.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

atgccatacgtgaggcgtataaactcaaatacttcctcaaagatctatgctagcaggacactgcttttcttgaaaagtgatggaactttgaagccattggtgattgaactaagcttgcctcatcctgatggagatcaactcggtcgcattagcagtgtattcacaccagctgaggaaggtgtagaaagctccatatggcatctggccaaagcttatgttgctgtaaatgactctggagttcatcaacttatcagtcactggttgaatactcatgctgtgtgtgagccagtagtaatagcaacaaacaggcaactgagtgtggttcacccgatatacaagcttcttcatcctcacttccgcgacaccatgaacataaatgcactagccaggcaaatcctcatcaatgctggtggcattctggagacgacagtgtttccagctaggtatgccatggagatgtcatcagttgtttacaagaattgggttttccctgagcaagctctccctgcagatcttatcaagagaggaatggcagtcaaggatgagagttccccacatggtctacgcctactgatacaggactacccctatggtgttgatgggatcgaaatctggtttgcgataagaaattgggttgaagactattgctcattctactacaagactgatgacattgttcaaaaagacacagaactccaatcctggtggaaggaactagtagaggagggtcatggtgacaaaaaagatgagccctggtggcctaaaatgcggactcgtgaagagctaatcgaaacttgcactatcatcatatggacttcttctgctctccatgcagctgtcaactttggacagtacccttatgcaggctacctcccatgccgccccactgcaagccgaagattcatgcctgaaaagggaactcctgaatatgatgagcttgagtccaaccctgataaggccttcttgaaaacaattactgctcaattccagacagtgcttggcatagccctcattgaaattctgtcaaggcattctaccgatgaagtgtatttgggccagacggacactcctaactggacatcagacgcaaaagcattggaagcttttgatagatttggaaagaaacttgctgaaatcgaagagaaaattacaaacttgaacaatgatgagaatctcaagaatagggttggaaaggtggagatgccttacactttgctgtatcccactggtgaaagtggaattgctggcaagggaattcccaacagtgtctcaatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0016165 GO:0016491 GO:0016701 GO:0016702 GO:0044424 GO:0044464 GO:0051213 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

425

Amino Acids

48.15

Weight (kDa)

5.61

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55020
fragaria_vesca	FvH4_4g09530 FvH4_6g06090 FvH4_6g06090 FvH4_6g06090 FvH4_6g06100
malus_domestica	MD04G1204000.v1.1 MD04G1204100.v1.1 MD04G1204200.v1.1 MD04G1204500.v1.1 MD04G1204600.v1.1 MD09G1069500.v1.1 MD12G1218000.v1.1 MD12G1218200.v1.1 MD12G1218300.v1.1
prunus_persica	Prupe.6G324100_v2.0.a1 Prupe.6G324100_v2.0.a1 Prupe.6G324200_v2.0.a1 Prupe.6G324200_v2.0.a1 Prupe.6G324300_v2.0.a1 Prupe.6G324400_v2.0.a1 Prupe.6G324600_v2.0.a1 Prupe.6G324600_v2.0.a1
pyrus_communis	pycom04g18050 pycom04g18060 pycom12433g00060 pycom12g20350 pycom12g20380 pycom12g20390
rosa_chinensis	RchiOBHm_Chr3g0455091 RchiOBHm_Chr3g0455111 RchiOBHm_Chr3g0455121 RchiOBHm_Chr4g0404751
rosa_laevigata	RLG00000008903 RLG00000010665 RLG00000025386 RLG00000025387 RLG00000025389
rosa_multiflora	Rmu_co8490177.1_g000001 Rmu_sc0001179.1_g000031 Rmu_sc0002169.1_g000019 Rmu_sc0002169.1_g000023 Rmu_sc0002169.1_g000024 Rmu_sc0002502.1_g000004
rosa_roxburghii	Rroxscaffold_5G00348930 Rroxscaffold_6G00424550 Rroxscaffold_6G00424560 Rroxscaffold_6G00424570 Rroxscaffold_7G00160420 Rroxscaffold_7G00160500
rosa_rugosa	Rorug03G0004000 Rorug03G0004000 Rorug04G0049200
rosa_samantha	Rh3AG064600 Rh3AG064700 Rh3AG064800 Rh3BG066700 Rh3CG065100 Rh3CG065200 Rh3DG066300 Rh3DG066600 Rh3DG066700 Rh4AG124900 Rh4CG133100 Rh4DG118900
rosa_wichuraiana	Rw3G005050 Rw3G005060 Rw3G005070 Rw4G010130 Rw6G041270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	562
AccII	CGCG	1 cut(s)	360
AciI	CCGC	3 cut(s)	358, 769, 880
AclWI	GGATC	1 cut(s)	611
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	2 cut(s)	1017, 1254
AfaI	GTAC	1 cut(s)	854
AfiI	CCNNNNNNNGG	3 cut(s)	863, 914, 955
AgsI	TTSAA	9 cut(s)	73, 91, 107, 265, 638, 680, 967, 1016, 1159
AhlI	ACTAGT	1 cut(s)	715
AjnI	CCWGG	3 cut(s)	386, 701, 752
Alw26I	GTCTC	2 cut(s)	416, 1273
AlwI	GGATC	1 cut(s)	611
AlwNI	CAGNNNCTG	1 cut(s)	258
AoxI	GGCC	4 cut(s)	204, 758, 957, 1054
ApeKI	GCWGC	1 cut(s)	833
ApoI	RAATTY	2 cut(s)	1017, 1254
AspS9I	GGNCC	1 cut(s)	1054
AsuHPI	GGTGA	4 cut(s)	112, 317, 746, 1241
AsuNHI	GCTAGC	1 cut(s)	50
BalI	TGGCCA	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	753
BauI	CACGAG	1 cut(s)	774
BbsI	GAAGAC	1 cut(s)	645
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	845
BccI	CCATC	3 cut(s)	74, 122, 593
BciT130I	CCWGG	3 cut(s)	388, 703, 754
BciVI	GTATCC	1 cut(s)	1230
BcoDI	GTCTC	2 cut(s)	416, 1273
BcuI	ACTAGT	1 cut(s)	715
BfaI	CTAG	4 cut(s)	51, 383, 441, 716
BfmI	CTRYAG	1 cut(s)	507
BfuI	GTATCC	1 cut(s)	1230
BglI	GCCNNNNNGGC	1 cut(s)	757
BglII	AGATCT	2 cut(s)	42, 511
BisI	GCNGC	2 cut(s)	834, 880
BlsI	GCNGC	2 cut(s)	835, 881
Bme1390I	CCNGG	3 cut(s)	388, 703, 754
BmgT120I	GGNCC	1 cut(s)	1054
BmrFI	CCNGG	3 cut(s)	388, 703, 754
BmsI	GCATC	2 cut(s)	208, 1191
BmtI	GCTAGC	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	645
BplI	GAGNNNNNCTC	2 cut(s)	123, 155
BpmI	CTGGAG	2 cut(s)	255, 440
Bpu10I	CCTNAGC	2 cut(s)	171, 492
BpuEI	CTTGAG	2 cut(s)	959, 1160
BsaAI	YACGTR	1 cut(s)	10
BsaBI	GATNNNNATC	3 cut(s)	132, 608, 1170
BsaJI	CCNNGG	2 cut(s)	450, 752
BsaXI	ACNNNNNCTCC	2 cut(s)	1051, 1081
Bsc4I	CCNNNNNNNGG	3 cut(s)	863, 914, 955
Bse1I	ACTGG	4 cut(s)	263, 287, 1079, 1231
Bse8I	GATNNNNATC	3 cut(s)	132, 608, 1170
BseBI	CCWGG	3 cut(s)	388, 703, 754
BseDI	CCNNGG	2 cut(s)	450, 752
BseGI	GGATG	3 cut(s)	121, 346, 547
BseJI	GATNNNNATC	3 cut(s)	132, 608, 1170
BseLI	CCNNNNNNNGG	3 cut(s)	863, 914, 955
BseMII	CTCAG	3 cut(s)	162, 305, 483
BseNI	ACTGG	4 cut(s)	263, 287, 1079, 1231
BseRI	GAGGAG	1 cut(s)	737
BseXI	GCAGC	1 cut(s)	845
Bsh1236I	CGCG	1 cut(s)	360
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	4 cut(s)	206, 760, 959, 1056
BsiEI	CGRYCG	1 cut(s)	145
BslI	CCNNNNNNNGG	3 cut(s)	863, 914, 955
BsmAI	GTCTC	2 cut(s)	416, 1273
BsmBI	CGTCTC	1 cut(s)	416
BsmI	GAATGC	2 cut(s)	414, 1030
BsnI	GGCC	4 cut(s)	206, 760, 959, 1056
Bsp1286I	GDGCHC	1 cut(s)	753
Bsp143I	GATC	4 cut(s)	42, 133, 511, 603
Bsp19I	CCATGG	1 cut(s)	450
BspACI	CCGC	3 cut(s)	358, 769, 880
BspANI	GGCC	4 cut(s)	206, 760, 959, 1056
BspCNI	CTCAG	3 cut(s)	163, 306, 484
BspFNI	CGCG	1 cut(s)	360
BspMAI	CTGCAG	1 cut(s)	511
BspOI	GCTAGC	1 cut(s)	54
BspPI	GGATC	1 cut(s)	611
BspQI	GCTCTTC	1 cut(s)	774
BsrI	ACTGG	4 cut(s)	263, 287, 1079, 1231
BssECI	CCNNGG	2 cut(s)	450, 752
BssMI	GATC	4 cut(s)	42, 133, 511, 603
BssSI	CACGAG	1 cut(s)	774
BssT1I	CCWWGG	1 cut(s)	450
Bst2BI	CACGAG	1 cut(s)	774
Bst2UI	CCWGG	3 cut(s)	388, 703, 754
Bst4CI	ACNGT	4 cut(s)	430, 852, 994, 1265
Bst6I	CTCTTC	2 cut(s)	774, 1134
BstBAI	YACGTR	1 cut(s)	10
BstC8I	GCNNGC	6 cut(s)	52, 116, 498, 865, 892, 1246
BstDEI	CTNAG	4 cut(s)	110, 171, 314, 492
BstDSI	CCRYGG	1 cut(s)	450
BstENI	CCTNNNNNAGG	1 cut(s)	861
BstF5I	GGATG	3 cut(s)	121, 346, 547
BstFNI	CGCG	1 cut(s)	360
BstKTI	GATC	4 cut(s)	45, 136, 514, 606
BstMAI	GTCTC	2 cut(s)	416, 1273
BstMBI	GATC	4 cut(s)	42, 133, 511, 603
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	7 cut(s)	218, 446, 506, 757, 766, 830, 1100
BstNI	CCWGG	3 cut(s)	388, 703, 754
BstSCI	CCNGG	3 cut(s)	386, 701, 752
BstSFI	CTRYAG	1 cut(s)	507
BstUI	CGCG	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	845
BstV2I	GAAGAC	1 cut(s)	645
BstX2I	RGATCY	2 cut(s)	42, 511
BstYI	RGATCY	2 cut(s)	42, 511
BsuI	GTATCC	1 cut(s)	1230
BsuRI	GGCC	4 cut(s)	206, 760, 959, 1056
BtgI	CCRYGG	1 cut(s)	450
BtsCI	GGATG	3 cut(s)	121, 346, 547
BtsI	GCAGTG	3 cut(s)	59, 160, 885
BtsIMutI	CAGTG	8 cut(s)	59, 160, 256, 435, 885, 999, 1224, 1270
Cac8I	GCNNGC	6 cut(s)	52, 116, 498, 865, 892, 1246
CaiI	CAGNNNCTG	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	1054
CseI	GACGC	1 cut(s)	1094
Csp6I	GTAC	1 cut(s)	853
CspCI	CAANNNNNGTGG	4 cut(s)	391, 426, 686, 721
CviAII	CATG	8 cut(s)	272, 367, 451, 557, 731, 830, 876, 904
CviQI	GTAC	1 cut(s)	853
DdeI	CTNAG	4 cut(s)	110, 171, 314, 492
DpnI	GATC	4 cut(s)	44, 135, 513, 605
DpnII	GATC	4 cut(s)	42, 133, 511, 603
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	2 cut(s)	774, 1134
EarI	CTCTTC	2 cut(s)	774, 1134
Eco130I	CCWWGG	1 cut(s)	450
Eco147I	AGGCCT	1 cut(s)	959
Eco24I	GRGCYC	1 cut(s)	753
EcoNI	CCTNNNNNAGG	1 cut(s)	861
EcoRI	GAATTC	1 cut(s)	1254
EcoRII	CCWGG	3 cut(s)	386, 701, 752
EcoT14I	CCWWGG	1 cut(s)	450
EcoT38I	GRGCYC	1 cut(s)	753
ErhI	CCWWGG	1 cut(s)	450
Esp3I	CGTCTC	1 cut(s)	416
FaeI	CATG	8 cut(s)	275, 370, 454, 560, 734, 833, 879, 907
FalI	AAGNNNNNCTT	2 cut(s)	947, 979
FatI	CATG	8 cut(s)	271, 366, 450, 556, 730, 829, 875, 903
FauNDI	CATATG	2 cut(s)	194, 809
FblI	GTMKAC	1 cut(s)	562
Fnu4HI	GCNGC	2 cut(s)	834, 880
FokI	GGATG	3 cut(s)	108, 333, 554
FriOI	GRGCYC	1 cut(s)	753
Fsp4HI	GCNGC	2 cut(s)	834, 880
FspBI	CTAG	4 cut(s)	51, 383, 441, 716
GluI	GCNGC	2 cut(s)	834, 880
GsuI	CTGGAG	2 cut(s)	255, 440
HaeIII	GGCC	4 cut(s)	206, 760, 959, 1056
HgaI	GACGC	1 cut(s)	1094
Hin1II	CATG	8 cut(s)	275, 370, 454, 560, 734, 833, 879, 907
HincII	GTYRAC	1 cut(s)	841
HindII	GTYRAC	1 cut(s)	841
HindIII	AAGCTT	4 cut(s)	112, 210, 338, 1101
HinfI	GANTC	5 cut(s)	230, 772, 900, 941, 1171
HphI	GGTGA	4 cut(s)	112, 317, 746, 1241
Hpy166II	GTNNAC	4 cut(s)	325, 472, 563, 841
Hpy188I	TCNGA	1 cut(s)	1084
Hpy8I	GTNNAC	4 cut(s)	325, 472, 563, 841
HpyAV	CCTTC	3 cut(s)	170, 703, 970
HpyCH4III	ACNGT	4 cut(s)	430, 852, 994, 1265
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	6 cut(s)	380, 509, 798, 833, 863, 890
HpyF10VI	GCNNNNNNNGC	7 cut(s)	218, 446, 506, 757, 766, 830, 1100
HpyF3I	CTNAG	4 cut(s)	110, 171, 314, 492
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	8 cut(s)	275, 370, 454, 560, 734, 833, 879, 907
Kzo9I	GATC	4 cut(s)	42, 133, 511, 603
LguI	GCTCTTC	1 cut(s)	774
LmnI	GCTCC	1 cut(s)	194
Lsp1109I	GCAGC	1 cut(s)	845
LweI	GCATC	2 cut(s)	208, 1191
MaeI	CTAG	4 cut(s)	51, 383, 441, 716
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	254, 734
MalI	GATC	4 cut(s)	44, 135, 513, 605
MboI	GATC	4 cut(s)	42, 133, 511, 603
MboII	GAAGA	6 cut(s)	335, 650, 791, 810, 909, 1151
MflI	RGATCY	2 cut(s)	42, 511
MhlI	GDGCHC	1 cut(s)	753
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	8 cut(s)	478, 628, 972, 983, 1017, 1146, 1239, 1254
MluNI	TGGCCA	1 cut(s)	206
MlyI	GAGTC	3 cut(s)	224, 766, 950
MmeI	TCCRAC	2 cut(s)	969, 1168
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
MslI	CAYNNNNRTG	2 cut(s)	126, 455
Msp20I	TGGCCA	1 cut(s)	206
MspA1I	CMGCKG	2 cut(s)	170, 836
MspR9I	CCNGG	3 cut(s)	388, 703, 754
Mva1269I	GAATGC	2 cut(s)	414, 1030
MvaI	CCWGG	3 cut(s)	388, 703, 754
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	7 cut(s)	218, 446, 506, 757, 766, 830, 1100
NcoI	CCATGG	1 cut(s)	450
NdeI	CATATG	2 cut(s)	194, 809
NdeII	GATC	4 cut(s)	42, 133, 511, 603
NheI	GCTAGC	1 cut(s)	50
NlaIII	CATG	8 cut(s)	275, 370, 454, 560, 734, 833, 879, 907
NmuCI	GTSAC	2 cut(s)	254, 734
PceI	AGGCCT	1 cut(s)	959
PciSI	GCTCTTC	1 cut(s)	774
PctI	GAATGC	2 cut(s)	414, 1030
PfeI	GAWTC	2 cut(s)	900, 1171
PkrI	GCNGC	2 cut(s)	835, 881
PleI	GAGTC	3 cut(s)	224, 766, 949
PpsI	GAGTC	3 cut(s)	224, 766, 949
Ppu21I	YACGTR	1 cut(s)	10
Psp6I	CCWGG	3 cut(s)	386, 701, 752
PspGI	CCWGG	3 cut(s)	386, 701, 752
PspPI	GGNCC	1 cut(s)	1054
PstI	CTGCAG	1 cut(s)	511
PstNI	CAGNNNCTG	1 cut(s)	258
PsuI	RGATCY	2 cut(s)	42, 511
PvuII	CAGCTG	2 cut(s)	170, 836
RsaI	GTAC	1 cut(s)	854
RsaNI	GTAC	1 cut(s)	853
RseI	CAYNNNNRTG	2 cut(s)	126, 455
SapI	GCTCTTC	1 cut(s)	774
SatI	GCNGC	2 cut(s)	834, 880
Sau3AI	GATC	4 cut(s)	42, 133, 511, 603
Sau96I	GGNCC	1 cut(s)	1054
SchI	GAGTC	3 cut(s)	224, 766, 950
ScrFI	CCNGG	3 cut(s)	388, 703, 754
SduI	GDGCHC	1 cut(s)	753
SfaNI	GCATC	2 cut(s)	208, 1191
SfcI	CTRYAG	1 cut(s)	507
SmiMI	CAYNNNNRTG	2 cut(s)	126, 455
SmlI	CTYRAG	2 cut(s)	938, 1175
SmoI	CTYRAG	2 cut(s)	938, 1175
SpeI	ACTAGT	1 cut(s)	715
Sse9I	AATT	8 cut(s)	478, 628, 972, 983, 1017, 1146, 1239, 1254
SseBI	AGGCCT	1 cut(s)	959
SsiI	CCGC	3 cut(s)	358, 769, 880
SspMI	CTAG	4 cut(s)	51, 383, 441, 716
StuI	AGGCCT	1 cut(s)	959
StyD4I	CCNGG	3 cut(s)	386, 701, 752
StyI	CCWWGG	1 cut(s)	450
TaaI	ACNGT	4 cut(s)	430, 852, 994, 1265
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	3 cut(s)	606, 789, 1137
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	8 cut(s)	478, 628, 972, 983, 1017, 1146, 1239, 1254
TauI	GCSGC	1 cut(s)	882
TfiI	GAWTC	2 cut(s)	900, 1171
TscAI	CASTG	8 cut(s)	66, 160, 263, 435, 892, 999, 1231, 1270
TseFI	GTSAC	2 cut(s)	254, 734
TseI	GCWGC	1 cut(s)	833
Tsp45I	GTSAC	2 cut(s)	254, 734
TspDTI	ATGAA	5 cut(s)	230, 335, 383, 892, 1056
TspGWI	ACGGA	1 cut(s)	1076
TspRI	CASTG	8 cut(s)	66, 160, 263, 435, 892, 999, 1231, 1270
XagI	CCTNNNNNAGG	1 cut(s)	861
XapI	RAATTY	2 cut(s)	1017, 1254
XcmI	CCANNNNNNNNNTGG	2 cut(s)	199, 995
XmiI	GTMKAC	1 cut(s)	562
XspI	CTAG	4 cut(s)	51, 383, 441, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.