Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000763

Physical Location & Seq

Genomic Coordinates Reverse (-)

3390370 .. 3391673

Gene Structure 1304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00160420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGCATGCGGTCATCGTGCCGTTTGTAATAGCCACCAACAGGCAGCTGAGCGTGCTTCATCCAGTTTACAAACTTCTGCATCCTCACTTCCATGACACGATGCATATAAATGCACTGGCCAGGCATATTCTCATTAATGCTGGTGGCTTTCTGGAGAGCACAGTTTTCCCAGCGCAGTATGCCATGGAACTGTCAGCTGTGGTTTATAGGAGTTGGGTTTTCCCCGACCAAGCTCTCCCTGCAGATCTCATCAAGAGAGGGATGGCTGTCAGGGATGCCAATTCTCCACACGGTGTTCGCCTACTGATAGAGGACTACCCATATGCTGTTGATGGACTGAATATTTGGTCTGCAATAAAAACTTGGGTGACAGACTATTGCTCCTTCTACTACAAGAGTGATGATATGGTTCAAAAAGACACTGAACTCCAGTCCTGGTGGAAGGAACTTGTGGAGCAGGGTCATGGTGACAAAAAGAATGAACCCTGGTGGCCTCAAATGCAGACTCGTGATGAGCTCATCGAAACATGCACTATCATCATTTGGATTGCCTCTGCGCTCCATGCAGCCGTCAACTTGGGACAATACTCTTTTGCCGGATACCTTCCAAACCGACCAACTATAAGCAGGAGATTCAGGCAAGATAGGACCTCCAGAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0016165 GO:0016491 GO:0016701 GO:0016702 GO:0044424 GO:0044464 GO:0051213 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

220

Amino Acids

25.41

Weight (kDa)

6.79

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	2 - 212	1.1e-119	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55020
fragaria_vesca	FvH4_4g09530 FvH4_6g06090 FvH4_6g06090 FvH4_6g06090 FvH4_6g06100
malus_domestica	MD04G1204000.v1.1 MD04G1204100.v1.1 MD04G1204200.v1.1 MD04G1204500.v1.1 MD04G1204600.v1.1 MD09G1069500.v1.1 MD12G1218000.v1.1 MD12G1218200.v1.1 MD12G1218300.v1.1
prunus_persica	Prupe.6G324100_v2.0.a1 Prupe.6G324100_v2.0.a1 Prupe.6G324200_v2.0.a1 Prupe.6G324200_v2.0.a1 Prupe.6G324300_v2.0.a1 Prupe.6G324400_v2.0.a1 Prupe.6G324600_v2.0.a1 Prupe.6G324600_v2.0.a1
pyrus_communis	pycom04g18050 pycom04g18060 pycom12433g00060 pycom12g20350 pycom12g20380 pycom12g20390
rosa_chinensis	RchiOBHm_Chr3g0455091 RchiOBHm_Chr3g0455111 RchiOBHm_Chr3g0455121 RchiOBHm_Chr4g0404751
rosa_laevigata	RLG00000008903 RLG00000010665 RLG00000025386 RLG00000025387 RLG00000025389
rosa_multiflora	Rmu_co8490177.1_g000001 Rmu_sc0001179.1_g000031 Rmu_sc0002169.1_g000019 Rmu_sc0002169.1_g000023 Rmu_sc0002169.1_g000024 Rmu_sc0002502.1_g000004
rosa_roxburghii	Rroxscaffold_5G00348930 Rroxscaffold_6G00424550 Rroxscaffold_6G00424560 Rroxscaffold_6G00424570 Rroxscaffold_7G00160420 Rroxscaffold_7G00160500
rosa_rugosa	Rorug03G0004000 Rorug03G0004000 Rorug04G0049200
rosa_samantha	Rh3AG064600 Rh3AG064700 Rh3AG064800 Rh3BG066700 Rh3CG065100 Rh3CG065200 Rh3DG066300 Rh3DG066600 Rh3DG066700 Rh4AG124900 Rh4CG133100 Rh4DG118900
rosa_wichuraiana	Rw3G005050 Rw3G005060 Rw3G005070 Rw4G010130 Rw6G041270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	8
AcoI	YGGCCR	1 cut(s)	117
AdeI	CACNNNGTG	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	413
AjnI	CCWGG	3 cut(s)	119, 434, 485
AluBI	AGCT	4 cut(s)	46, 197, 233, 517
AluI	AGCT	4 cut(s)	46, 197, 233, 517
Alw21I	GWGCWC	2 cut(s)	161, 519
AoxI	GGCC	2 cut(s)	117, 491
ApeKI	GCWGC	2 cut(s)	43, 566
ArsI	GACNNNNNNTTYG	2 cut(s)	327, 359
AseI	ATTAAT	1 cut(s)	135
AspLEI	GCGC	2 cut(s)	175, 559
AspS9I	GGNCC	1 cut(s)	648
AsuHPI	GGTGA	2 cut(s)	379, 479
AvaII	GGWCC	1 cut(s)	648
BalI	TGGCCA	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	519
BauI	CACGAG	1 cut(s)	507
Bbv12I	GWGCWC	2 cut(s)	161, 519
BbvI	GCAGC	2 cut(s)	55, 578
BccI	CCATC	2 cut(s)	256, 326
BceAI	ACGGC	2 cut(s)	4, 554
BciT130I	CCWGG	3 cut(s)	121, 436, 487
BciVI	GTATCC	1 cut(s)	593
BfmI	CTRYAG	1 cut(s)	240
BfuI	GTATCC	1 cut(s)	593
BglII	AGATCT	1 cut(s)	244
BisI	GCNGC	2 cut(s)	44, 567
BlpI	GCTNAGC	1 cut(s)	47
BlsI	GCNGC	2 cut(s)	45, 568
Bme1390I	CCNGG	3 cut(s)	121, 436, 487
Bme18I	GGWCC	1 cut(s)	648
BmgT120I	GGNCC	1 cut(s)	648
BmrFI	CCNGG	3 cut(s)	121, 436, 487
BmsI	GCATC	3 cut(s)	88, 90, 265
BpmI	CTGGAG	3 cut(s)	173, 413, 637
Bpu1102I	GCTNAGC	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	183, 485
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	3 cut(s)	62, 120, 430
BseBI	CCWGG	3 cut(s)	121, 436, 487
BseDI	CCNNGG	2 cut(s)	183, 485
BseGI	GGATG	4 cut(s)	58, 79, 267, 280
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	3 cut(s)	62, 120, 430
BseXI	GCAGC	2 cut(s)	55, 578
BseYI	CCCAGC	1 cut(s)	169
BshFI	GGCC	2 cut(s)	119, 493
BsiHKAI	GWGCWC	2 cut(s)	161, 519
BsiSI	CCGG	1 cut(s)	597
BslFI	GGGAC	1 cut(s)	594
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	594
BsnI	GGCC	2 cut(s)	119, 493
Bsp1286I	GDGCHC	2 cut(s)	161, 519
Bsp143I	GATC	1 cut(s)	244
Bsp1720I	GCTNAGC	1 cut(s)	47
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	2 cut(s)	119, 493
BspCNI	CTCAG	1 cut(s)	39
BspMAI	CTGCAG	1 cut(s)	244
BsrI	ACTGG	3 cut(s)	62, 120, 430
BssECI	CCNNGG	2 cut(s)	183, 485
BssMI	GATC	1 cut(s)	244
BssSI	CACGAG	1 cut(s)	507
BssT1I	CCWWGG	1 cut(s)	183
Bst2BI	CACGAG	1 cut(s)	507
Bst2UI	CCWGG	3 cut(s)	121, 436, 487
Bst4CI	ACNGT	3 cut(s)	163, 192, 293
BstC8I	GCNNGC	2 cut(s)	6, 53
BstDEI	CTNAG	1 cut(s)	47
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	4 cut(s)	58, 79, 267, 280
BstHHI	GCGC	2 cut(s)	175, 559
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	5 cut(s)	52, 179, 239, 499, 563
BstNI	CCWGG	3 cut(s)	121, 436, 487
BstNSI	RCATGY	2 cut(s)	8, 531
BstSCI	CCNGG	3 cut(s)	119, 434, 485
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	2 cut(s)	55, 578
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BsuI	GTATCC	1 cut(s)	593
BsuRI	GGCC	2 cut(s)	119, 493
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	4 cut(s)	58, 79, 267, 280
BtsIMutI	CAGTG	2 cut(s)	113, 420
Cac8I	GCNNGC	2 cut(s)	6, 53
CfoI	GCGC	2 cut(s)	175, 559
Cfr13I	GGNCC	1 cut(s)	648
CviAII	CATG	6 cut(s)	5, 92, 184, 464, 528, 563
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
DraIII	CACNNNGTG	1 cut(s)	293
EaeI	YGGCCR	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	517
Eco130I	CCWWGG	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	519
Eco47I	GGWCC	1 cut(s)	648
Eco53kI	GAGCTC	1 cut(s)	517
EcoICRI	GAGCTC	1 cut(s)	517
EcoO109I	RGGNCCY	1 cut(s)	648
EcoRII	CCWGG	3 cut(s)	119, 434, 485
EcoT14I	CCWWGG	1 cut(s)	183
EcoT22I	ATGCAT	2 cut(s)	6, 105
EcoT38I	GRGCYC	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	6 cut(s)	8, 95, 187, 467, 531, 566
FaqI	GGGAC	1 cut(s)	594
FatI	CATG	6 cut(s)	4, 91, 183, 463, 527, 562
FauNDI	CATATG	1 cut(s)	322
Fnu4HI	GCNGC	2 cut(s)	44, 567
FokI	GGATG	4 cut(s)	45, 66, 274, 287
FriOI	GRGCYC	1 cut(s)	519
Fsp4HI	GCNGC	2 cut(s)	44, 567
GlaI	GCGC	2 cut(s)	174, 558
GluI	GCNGC	2 cut(s)	44, 567
GsaI	CCCAGC	1 cut(s)	173
GsuI	CTGGAG	3 cut(s)	173, 413, 637
HaeIII	GGCC	2 cut(s)	119, 493
HapII	CCGG	1 cut(s)	597
HhaI	GCGC	2 cut(s)	175, 559
Hin1II	CATG	6 cut(s)	8, 95, 187, 467, 531, 566
Hin6I	GCGC	2 cut(s)	173, 557
HinP1I	GCGC	2 cut(s)	173, 557
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HinfI	GANTC	2 cut(s)	505, 633
HpaII	CCGG	1 cut(s)	597
HphI	GGTGA	2 cut(s)	379, 479
Hpy166II	GTNNAC	2 cut(s)	67, 574
Hpy188III	TCNNGA	4 cut(s)	152, 253, 509, 654
Hpy8I	GTNNAC	2 cut(s)	67, 574
HpyAV	CCTTC	3 cut(s)	394, 436, 614
HpyCH4III	ACNGT	3 cut(s)	163, 192, 293
HpyCH4V	TGCA	9 cut(s)	4, 79, 103, 113, 242, 353, 502, 531, 566
HpyF10VI	GCNNNNNNNGC	5 cut(s)	52, 179, 239, 499, 563
HpyF3I	CTNAG	1 cut(s)	47
Hsp92II	CATG	6 cut(s)	8, 95, 187, 467, 531, 566
HspAI	GCGC	2 cut(s)	173, 557
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	3 cut(s)	386, 454, 564
Lsp1109I	GCAGC	2 cut(s)	55, 578
LweI	GCATC	3 cut(s)	88, 90, 265
MaeIII	GTNAC	2 cut(s)	367, 467
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	2 cut(s)	161, 519
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	1 cut(s)	280
MluNI	TGGCCA	1 cut(s)	119
MlyI	GAGTC	1 cut(s)	499
MnlI	CCTC	6 cut(s)	93, 251, 304, 504, 562, 661
Mox20I	TGGCCA	1 cut(s)	119
Mph1103I	ATGCAT	2 cut(s)	6, 105
MscI	TGGCCA	1 cut(s)	119
MseI	TTAA	1 cut(s)	135
MslI	CAYNNNNRTG	2 cut(s)	90, 108
Msp20I	TGGCCA	1 cut(s)	119
MspA1I	CMGCKG	2 cut(s)	46, 197
MspI	CCGG	1 cut(s)	597
MspR9I	CCNGG	3 cut(s)	121, 436, 487
MvaI	CCWGG	3 cut(s)	121, 436, 487
MwoI	GCNNNNNNNGC	5 cut(s)	52, 179, 239, 499, 563
NcoI	CCATGG	1 cut(s)	183
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	6 cut(s)	8, 95, 187, 467, 531, 566
NmuCI	GTSAC	2 cut(s)	367, 467
NsiI	ATGCAT	2 cut(s)	6, 105
NspI	RCATGY	2 cut(s)	8, 531
PaeI	GCATGC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	633
PkrI	GCNGC	2 cut(s)	45, 568
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
PpuMI	RGGWCCY	1 cut(s)	648
PshBI	ATTAAT	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	519
Psp5II	RGGWCCY	1 cut(s)	648
Psp6I	CCWGG	3 cut(s)	119, 434, 485
PspFI	CCCAGC	1 cut(s)	169
PspGI	CCWGG	3 cut(s)	119, 434, 485
PspPI	GGNCC	1 cut(s)	648
PspPPI	RGGWCCY	1 cut(s)	648
PstI	CTGCAG	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	244
PvuII	CAGCTG	2 cut(s)	46, 197
RseI	CAYNNNNRTG	2 cut(s)	90, 108
SacI	GAGCTC	1 cut(s)	519
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	2 cut(s)	44, 567
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	1 cut(s)	648
SchI	GAGTC	1 cut(s)	499
ScrFI	CCNGG	3 cut(s)	121, 436, 487
SduI	GDGCHC	2 cut(s)	161, 519
SetI	ASST	6 cut(s)	48, 199, 235, 519, 606, 653
SfaNI	GCATC	3 cut(s)	88, 90, 265
SfcI	CTRYAG	1 cut(s)	240
SinI	GGWCC	1 cut(s)	648
SmiMI	CAYNNNNRTG	2 cut(s)	90, 108
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	1 cut(s)	280
SsiI	CCGC	1 cut(s)	8
SspI	AATATT	1 cut(s)	343
SstI	GAGCTC	1 cut(s)	519
StyD4I	CCNGG	3 cut(s)	119, 434, 485
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	3 cut(s)	163, 192, 293
TaqI	TCGA	1 cut(s)	522
TasI	AATT	1 cut(s)	280
TfiI	GAWTC	1 cut(s)	633
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	2 cut(s)	120, 427
TseFI	GTSAC	2 cut(s)	367, 467
TseI	GCWGC	2 cut(s)	43, 566
Tsp45I	GTSAC	2 cut(s)	367, 467
TspDTI	ATGAA	2 cut(s)	47, 495
TspRI	CASTG	2 cut(s)	120, 427
VpaK11BI	GGWCC	1 cut(s)	648
VspI	ATTAAT	1 cut(s)	135
XceI	RCATGY	2 cut(s)	8, 531
Zsp2I	ATGCAT	2 cut(s)	6, 105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.