Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003254

Physical Location & Seq

Genomic Coordinates Reverse (-)

34224444 .. 34233311

Gene Structure 8868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1265000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGAAGGCTGGCAGGATTTTGTTGCTTCTTCTTTGTTTGAATGAGGTTACATTTGGAGTGATTGCTGATTCGCCAACATGCCCTGCATCAGATCTTGGAAGTGGGTGCAGTGGTTCTGATGAATGGGAAGGGGAATTTTTCCCTGGCATTCCCAAAATTAAGTATGAGGGCCCCTCTACCAAGAACCCCCTTGCATTCAAGTGGTATAATGCGGACGAGGAGATTCTTGGGAAAAAAATGAAGGAGTGGATGAGGTTTAGTGTTGCATTTTGGCACACATTCCGTGGAACAGGAGGTGACCCATTTGGTGCACCTACAAAGAATTGGCCATGGGAGGATGGAACTAATTCTGTGGCTATGGCAAAGCGAAGAATGAGAGCCAACTTTCAGTTCATAAATAAGCTTGGAGTTGATAGGTGGTGTTTCCATGACAGGGATATAGCTCCCGATGGCAAAACCTTGGAGGAATCTAATAAAAACTTGGATGAAGTGGTGGCCCTTGCTAAGGAGCTTCAGGCATGGCTCATCGGTTATCTGACAATTCTTTTTTGGTCACTTTACTCTGGAAAAAGAGACCAATCAATCATACGCAGCCTCCAAAACCCCATGCTAGTCAATGGAACCAAAATTCGACCTTTATGGGGCACAGCTCAGCTGTTTTTGCATCCTCGTTACATGCATGGTGGTGCTACCAGCCCCGAAGTAGGTGTGTATGCATATGCTGCTGCTCAAGTTAAGAAAGCCATTGAGGTTACACATTATTTAGGGGGTGAAAATTATGTTTTCTGGGGTGGCCGTGAGGGTTACCAGAGTCTCTTGAATACTGACATGGGAAGAGAGCTTGATCATCTGGCAAGGTTTCTTGAAGCTGCTGTTGCCTACAAGAAGAAAATTGGATTCAATGGTATACTTGCACTAAATTTATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00040 ko00051 ko01100 map00040 map00051 map01100

Pfam Domains

Protein Families

No domains found.

Protein Analysis

310

Amino Acids

34.78

Weight (kDa)

8.52

Isoelectric Point (pI)

37.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57655 AT5G57655
fragaria_vesca	FvH4_4g32520 FvH4_4g32520 FvH4_4g32520
malus_domestica	MD13G1265000.v1.1 MD16G1265900.v1.1
prunus_persica	Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1
pyrus_communis	pycom13g23640 pycom16g23510
rosa_chinensis	RchiOBHm_Chr4g0403601 RchiOBHm_Chr5g0036521 RchiOBHm_Chr5g0046871
rosa_laevigata	RLG00000008967
rosa_multiflora	Rmu_co8193382.1_g000001 Rmu_sc0006376.1_g000016 Rmu_sc0007038.1_g000004
rosa_roxburghii	Rroxscaffold_5G00348230
rosa_rugosa	Rorug04G0044500 Rorug04G0044600 Rorug04G0044600
rosa_samantha	Rh4AG119600 Rh4AG148500 Rh4BG112800 Rh4BG186000 Rh4CG026500 Rh4CG127600 Rh4DG112300 Rh5BG320700 Rh5CG483800 Rh5DG258300 Rh5DG331400 Rh6AG078400
rosa_wichuraiana	Rw4G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	907
AciI	CCGC	1 cut(s)	212
AcoI	YGGCCR	2 cut(s)	326, 793
AcsI	RAATTY	3 cut(s)	134, 627, 919
AcuI	CTGAAG	1 cut(s)	497
AfiI	CCNNNNNNNGG	4 cut(s)	433, 505, 641, 704
AgsI	TTSAA	5 cut(s)	40, 199, 820, 866, 901
AjnI	CCWGG	1 cut(s)	142
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AluBI	AGCT	7 cut(s)	403, 443, 511, 650, 655, 841, 869
AluI	AGCT	7 cut(s)	403, 443, 511, 650, 655, 841, 869
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	2 cut(s)	567, 818
Alw44I	GTGCAC	1 cut(s)	309
AoxI	GGCC	4 cut(s)	169, 326, 495, 793
ApaI	GGGCCC	1 cut(s)	173
ApaLI	GTGCAC	1 cut(s)	309
ApeKI	GCWGC	4 cut(s)	591, 722, 725, 869
ApoI	RAATTY	3 cut(s)	134, 627, 919
Asp700I	GAANNNNTTC	1 cut(s)	346
AspS9I	GGNCC	3 cut(s)	169, 170, 496
AsuHPI	GGTGA	2 cut(s)	308, 782
BaeGI	GKGCMC	3 cut(s)	173, 313, 647
BalI	TGGCCA	1 cut(s)	328
BanII	GRGCYC	1 cut(s)	173
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	4 cut(s)	603, 709, 712, 856
BccI	CCATC	2 cut(s)	332, 443
BceAI	ACGGC	1 cut(s)	780
BciT130I	CCWGG	1 cut(s)	144
BclI	TGATCA	1 cut(s)	844
BcoDI	GTCTC	2 cut(s)	567, 818
BfaI	CTAG	1 cut(s)	611
BglII	AGATCT	1 cut(s)	91
BisI	GCNGC	4 cut(s)	592, 723, 726, 870
BlpI	GCTNAGC	1 cut(s)	651
BlsI	GCNGC	4 cut(s)	593, 724, 727, 871
Bme1390I	CCNGG	1 cut(s)	144
BmgT120I	GGNCC	3 cut(s)	169, 170, 496
BmiI	GGNNCC	3 cut(s)	171, 172, 622
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	2 cut(s)	95, 673
BplI	GAGNNNNNCTC	2 cut(s)	158, 190
Bpu10I	CCTNAGC	1 cut(s)	504
Bpu1102I	GCTNAGC	1 cut(s)	651
BpuEI	CTTGAG	1 cut(s)	714
BsaI	GGTCTC	1 cut(s)	567
BsaJI	CCNNGG	4 cut(s)	142, 283, 329, 459
BsaXI	ACNNNNNCTCC	2 cut(s)	579, 609
Bsc4I	CCNNNNNNNGG	4 cut(s)	433, 505, 641, 704
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	4 cut(s)	142, 283, 329, 459
BseGI	GGATG	4 cut(s)	255, 343, 490, 664
BseLI	CCNNNNNNNGG	4 cut(s)	433, 505, 641, 704
BseMII	CTCAG	1 cut(s)	665
BseRI	GAGGAG	1 cut(s)	233
BseSI	GKGCMC	3 cut(s)	173, 313, 647
BseXI	GCAGC	4 cut(s)	603, 709, 712, 856
BsgI	GTGCAG	1 cut(s)	127
BshFI	GGCC	4 cut(s)	171, 328, 497, 795
BsiHKAI	GWGCWC	1 cut(s)	313
BslI	CCNNNNNNNGG	4 cut(s)	433, 505, 641, 704
BsmAI	GTCTC	2 cut(s)	567, 818
BsmI	GAATGC	2 cut(s)	147, 194
BsnI	GGCC	4 cut(s)	171, 328, 497, 795
Bso31I	GGTCTC	1 cut(s)	567
Bsp120I	GGGCCC	1 cut(s)	169
Bsp1286I	GDGCHC	3 cut(s)	173, 313, 647
Bsp143I	GATC	2 cut(s)	91, 844
Bsp1720I	GCTNAGC	1 cut(s)	651
Bsp19I	CCATGG	1 cut(s)	329
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	4 cut(s)	171, 328, 497, 795
BspCNI	CTCAG	1 cut(s)	664
BspLI	GGNNCC	3 cut(s)	171, 172, 622
BspTNI	GGTCTC	1 cut(s)	567
BssECI	CCNNGG	4 cut(s)	142, 283, 329, 459
BssMI	GATC	2 cut(s)	91, 844
BssNAI	GTATAC	1 cut(s)	908
BssT1I	CCWWGG	2 cut(s)	329, 459
Bst1107I	GTATAC	1 cut(s)	908
Bst2UI	CCWGG	1 cut(s)	144
Bst6I	CTCTTC	1 cut(s)	829
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	2 cut(s)	504, 651
BstDSI	CCRYGG	2 cut(s)	283, 329
BstEII	GGTNACC	2 cut(s)	296, 803
BstENI	CCTNNNNNAGG	1 cut(s)	503
BstF5I	GGATG	4 cut(s)	255, 343, 490, 664
BstKTI	GATC	2 cut(s)	94, 847
BstMAI	GTCTC	2 cut(s)	567, 818
BstMBI	GATC	2 cut(s)	91, 844
BstMWI	GCNNNNNNNGC	3 cut(s)	661, 722, 875
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	2 cut(s)	81, 679
BstPI	GGTNACC	2 cut(s)	296, 803
BstSCI	CCNGG	1 cut(s)	142
BstSLI	GKGCMC	3 cut(s)	173, 313, 647
BstV1I	GCAGC	4 cut(s)	603, 709, 712, 856
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BstZ17I	GTATAC	1 cut(s)	908
BsuRI	GGCC	4 cut(s)	171, 328, 497, 795
BtgI	CCRYGG	2 cut(s)	283, 329
BtsCI	GGATG	4 cut(s)	255, 343, 490, 664
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	10
Cfr13I	GGNCC	3 cut(s)	169, 170, 496
CviAII	CATG	8 cut(s)	78, 330, 428, 519, 607, 676, 680, 829
DdeI	CTNAG	2 cut(s)	504, 651
DpnI	GATC	2 cut(s)	93, 846
DpnII	GATC	2 cut(s)	91, 844
EaeI	YGGCCR	2 cut(s)	326, 793
Eam1104I	CTCTTC	1 cut(s)	829
EarI	CTCTTC	1 cut(s)	829
Eco130I	CCWWGG	2 cut(s)	329, 459
Eco24I	GRGCYC	1 cut(s)	173
Eco31I	GGTCTC	1 cut(s)	567
Eco57I	CTGAAG	1 cut(s)	497
Eco91I	GGTNACC	2 cut(s)	296, 803
EcoNI	CCTNNNNNAGG	1 cut(s)	503
EcoO109I	RGGNCCY	2 cut(s)	169, 170
EcoO65I	GGTNACC	2 cut(s)	296, 803
EcoRII	CCWGG	1 cut(s)	142
EcoT14I	CCWWGG	2 cut(s)	329, 459
EcoT22I	ATGCAT	2 cut(s)	681, 718
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	2 cut(s)	329, 459
FaeI	CATG	8 cut(s)	81, 333, 431, 522, 610, 679, 683, 832
FatI	CATG	8 cut(s)	77, 329, 427, 518, 606, 675, 679, 828
FauNDI	CATATG	1 cut(s)	718
FbaI	TGATCA	1 cut(s)	844
FblI	GTMKAC	1 cut(s)	907
Fnu4HI	GCNGC	4 cut(s)	592, 723, 726, 870
FokI	GGATG	4 cut(s)	262, 350, 497, 651
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	4 cut(s)	592, 723, 726, 870
FspBI	CTAG	1 cut(s)	611
GluI	GCNGC	4 cut(s)	592, 723, 726, 870
HaeIII	GGCC	4 cut(s)	171, 328, 497, 795
Hin1II	CATG	8 cut(s)	81, 333, 431, 522, 610, 679, 683, 832
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	5 cut(s)	68, 223, 467, 811, 897
HphI	GGTGA	2 cut(s)	308, 782
Hpy166II	GTNNAC	2 cut(s)	311, 908
Hpy188I	TCNGA	3 cut(s)	91, 118, 537
Hpy188III	TCNNGA	4 cut(s)	446, 564, 817, 863
Hpy8I	GTNNAC	2 cut(s)	311, 908
HpyAV	CCTTC	2 cut(s)	122, 235
HpyCH4V	TGCA	9 cut(s)	86, 108, 194, 266, 311, 664, 679, 716, 914
HpyF10VI	GCNNNNNNNGC	3 cut(s)	661, 722, 875
HpyF3I	CTNAG	2 cut(s)	504, 651
Hsp92II	CATG	8 cut(s)	81, 333, 431, 522, 610, 679, 683, 832
Ksp22I	TGATCA	1 cut(s)	844
Kzo9I	GATC	2 cut(s)	91, 844
LmnI	GCTCC	2 cut(s)	448, 508
Lsp1109I	GCAGC	4 cut(s)	603, 709, 712, 856
LweI	GCATC	2 cut(s)	95, 673
MaeI	CTAG	1 cut(s)	611
MaeIII	GTNAC	6 cut(s)	46, 296, 552, 671, 751, 803
MalI	GATC	2 cut(s)	93, 846
MboI	GATC	2 cut(s)	91, 844
MboII	GAAGA	4 cut(s)	20, 381, 846, 898
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	3 cut(s)	173, 313, 647
MlsI	TGGCCA	1 cut(s)	328
MluCI	AATT	9 cut(s)	134, 156, 322, 346, 540, 627, 775, 891, 919
MluNI	TGGCCA	1 cut(s)	328
MlyI	GAGTC	1 cut(s)	820
Mox20I	TGGCCA	1 cut(s)	328
Mph1103I	ATGCAT	2 cut(s)	681, 718
MroXI	GAANNNNTTC	1 cut(s)	346
MscI	TGGCCA	1 cut(s)	328
MseI	TTAA	2 cut(s)	159, 735
MslI	CAYNNNNRTG	2 cut(s)	199, 684
Msp20I	TGGCCA	1 cut(s)	328
MspA1I	CMGCKG	1 cut(s)	655
MspR9I	CCNGG	1 cut(s)	144
Mva1269I	GAATGC	2 cut(s)	147, 194
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	3 cut(s)	661, 722, 875
NcoI	CCATGG	1 cut(s)	329
NdeI	CATATG	1 cut(s)	718
NdeII	GATC	2 cut(s)	91, 844
NlaIII	CATG	8 cut(s)	81, 333, 431, 522, 610, 679, 683, 832
NlaIV	GGNNCC	3 cut(s)	171, 172, 622
NmuCI	GTSAC	2 cut(s)	296, 552
NsiI	ATGCAT	2 cut(s)	681, 718
NspI	RCATGY	2 cut(s)	81, 679
PctI	GAATGC	2 cut(s)	147, 194
PdmI	GAANNNNTTC	1 cut(s)	346
PfeI	GAWTC	4 cut(s)	68, 223, 467, 897
PkrI	GCNGC	4 cut(s)	593, 724, 727, 871
PleI	GAGTC	1 cut(s)	819
PpsI	GAGTC	1 cut(s)	819
Psp6I	CCWGG	1 cut(s)	142
PspEI	GGTNACC	2 cut(s)	296, 803
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	3 cut(s)	171, 172, 622
PspOMI	GGGCCC	1 cut(s)	169
PspPI	GGNCC	3 cut(s)	169, 170, 496
PsuI	RGATCY	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	655
RseI	CAYNNNNRTG	2 cut(s)	199, 684
SaqAI	TTAA	2 cut(s)	159, 735
SatI	GCNGC	4 cut(s)	592, 723, 726, 870
Sau3AI	GATC	2 cut(s)	91, 844
Sau96I	GGNCC	3 cut(s)	169, 170, 496
SchI	GAGTC	1 cut(s)	820
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	3 cut(s)	173, 313, 647
SfaNI	GCATC	2 cut(s)	95, 673
SmiMI	CAYNNNNRTG	2 cut(s)	199, 684
SmlI	CTYRAG	1 cut(s)	729
SmoI	CTYRAG	1 cut(s)	729
Sse9I	AATT	9 cut(s)	134, 156, 322, 346, 540, 627, 775, 891, 919
SsiI	CCGC	1 cut(s)	212
SspMI	CTAG	1 cut(s)	611
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	2 cut(s)	329, 459
TaqI	TCGA	1 cut(s)	631
TasI	AATT	9 cut(s)	134, 156, 322, 346, 540, 627, 775, 891, 919
TfiI	GAWTC	4 cut(s)	68, 223, 467, 897
Tru1I	TTAA	2 cut(s)	159, 735
Tru9I	TTAA	2 cut(s)	159, 735
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	2 cut(s)	296, 552
TseI	GCWGC	4 cut(s)	591, 722, 725, 869
Tsp45I	GTSAC	2 cut(s)	296, 552
TspDTI	ATGAA	5 cut(s)	17, 135, 254, 382, 501
TspGWI	ACGGA	1 cut(s)	272
TspRI	CASTG	1 cut(s)	115
VneI	GTGCAC	1 cut(s)	309
XagI	CCTNNNNNAGG	1 cut(s)	503
XapI	RAATTY	3 cut(s)	134, 627, 919
XceI	RCATGY	2 cut(s)	81, 679
XmiI	GTMKAC	1 cut(s)	907
XmnI	GAANNNNTTC	1 cut(s)	346
XspI	CTAG	1 cut(s)	611
Zsp2I	ATGCAT	2 cut(s)	681, 718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.