Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003254

Physical Location & Seq

Genomic Coordinates Reverse (-)

42930378 .. 42935749

Gene Structure 5372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG320700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTTGATGGGATACCCAAAAAAAGAGGAAACGCACAATTACCAGGGTCGCACCCAGTTTCGCTTAGCAGGGGAATTTTTCCTTAATATTCCCAAAATTAAATATGAGGGGCCCTCTAGTAAGAACCCTCTTGCATACAAATGGTATAATGCAGAGGAGGAGATTCTAGGGAAGAAAATGAACGATTGGTTGAGGTTTAGTGTTGCATTTTGGCACACATTCCGTGGAACAGGAGCTGATCCATTCGGTGCGCCTACAAAAAATTGGCATTGGGTGGATGGAACTTATAACTCTGTTGCTATGGCCAAGAGAAGAATGAAAGCCAACTTTGAGTTCATATATAAGCTTGGAGTCGATAGATGGTGTTTCCATGACAGGGATATTGATCCGGATGGTAAAACCTTGGAGGTAAATCATTCCTTAAGGTTACTTTTACTGATACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00040 ko00051 ko01100 map00040 map00051 map01100

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

17.5

Weight (kDa)

9.3

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57655 AT5G57655
fragaria_vesca	FvH4_4g32520 FvH4_4g32520 FvH4_4g32520
malus_domestica	MD13G1265000.v1.1 MD16G1265900.v1.1
prunus_persica	Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1
pyrus_communis	pycom13g23640 pycom16g23510
rosa_chinensis	RchiOBHm_Chr4g0403601 RchiOBHm_Chr5g0036521 RchiOBHm_Chr5g0046871
rosa_laevigata	RLG00000008967
rosa_multiflora	Rmu_co8193382.1_g000001 Rmu_sc0006376.1_g000016 Rmu_sc0007038.1_g000004
rosa_roxburghii	Rroxscaffold_5G00348230
rosa_rugosa	Rorug04G0044500 Rorug04G0044600 Rorug04G0044600
rosa_samantha	Rh4AG119600 Rh4AG148500 Rh4BG112800 Rh4BG186000 Rh4CG026500 Rh4CG127600 Rh4DG112300 Rh5BG320700 Rh5CG483800 Rh5DG258300 Rh5DG331400 Rh6AG078400
rosa_wichuraiana	Rw4G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	288
AccIII	TCCGGA	1 cut(s)	388
AclWI	GGATC	2 cut(s)	233, 380
AcoI	YGGCCR	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	376
AflII	CTTAAG	1 cut(s)	421
AjnI	CCWGG	1 cut(s)	42
AjuI	GAANNNNNNNTTGG	2 cut(s)	317, 349
AluBI	AGCT	2 cut(s)	236, 346
AluI	AGCT	2 cut(s)	236, 346
AlwI	GGATC	2 cut(s)	233, 380
AlwNI	CAGNNNCTG	1 cut(s)	236
Aor13HI	TCCGGA	1 cut(s)	388
AoxI	GGCC	2 cut(s)	110, 303
ApaI	GGGCCC	1 cut(s)	114
ApoI	RAATTY	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	2 cut(s)	110, 111
BaeGI	GKGCMC	1 cut(s)	114
BalI	TGGCCA	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	114
BccI	CCATC	3 cut(s)	272, 354, 386
BciT130I	CCWGG	1 cut(s)	44
BciVI	GTATCC	1 cut(s)	5
BfaI	CTAG	2 cut(s)	117, 167
BfrI	CTTAAG	1 cut(s)	421
BfuI	GTATCC	1 cut(s)	5
BlpI	GCTNAGC	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	110, 111
BmiI	GGNNCC	2 cut(s)	111, 112
BmrFI	CCNGG	1 cut(s)	44
BmrI	ACTGGG	1 cut(s)	49
BmuI	ACTGGG	1 cut(s)	49
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
Bpu1102I	GCTNAGC	1 cut(s)	64
BsaBI	GATNNNNATC	1 cut(s)	384
BsaJI	CCNNGG	3 cut(s)	43, 223, 402
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse1I	ACTGG	1 cut(s)	55
Bse8I	GATNNNNATC	1 cut(s)	384
BseAI	TCCGGA	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	3 cut(s)	43, 223, 402
BseGI	GGATG	2 cut(s)	283, 397
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseNI	ACTGG	1 cut(s)	55
BseRI	GAGGAG	2 cut(s)	170, 173
BseSI	GKGCMC	1 cut(s)	114
BshFI	GGCC	2 cut(s)	112, 305
BsiSI	CCGG	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	376
BsnI	GGCC	2 cut(s)	112, 305
Bsp120I	GGGCCC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp13I	TCCGGA	1 cut(s)	388
Bsp143I	GATC	2 cut(s)	238, 385
Bsp1720I	GCTNAGC	1 cut(s)	64
BspANI	GGCC	2 cut(s)	112, 305
BspEI	TCCGGA	1 cut(s)	388
BspLI	GGNNCC	2 cut(s)	111, 112
BspPI	GGATC	2 cut(s)	233, 380
BspTI	CTTAAG	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	3 cut(s)	43, 223, 402
BssMI	GATC	2 cut(s)	238, 385
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	44
BstAFI	CTTAAG	1 cut(s)	421
BstDEI	CTNAG	1 cut(s)	64
BstDSI	CCRYGG	1 cut(s)	223
BstF5I	GGATG	2 cut(s)	283, 397
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	2 cut(s)	241, 388
BstMBI	GATC	2 cut(s)	238, 385
BstNI	CCWGG	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	42
BstSLI	GKGCMC	1 cut(s)	114
BsuI	GTATCC	1 cut(s)	5
BsuRI	GGCC	2 cut(s)	112, 305
BtgI	CCRYGG	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	283, 397
CaiI	CAGNNNCTG	1 cut(s)	236
CfoI	GCGC	1 cut(s)	253
Cfr13I	GGNCC	2 cut(s)	110, 111
CviAII	CATG	1 cut(s)	371
CviJI	RGCY	5 cut(s)	112, 236, 305, 323, 346
CviKI_1	RGCY	5 cut(s)	112, 236, 305, 323, 346
DdeI	CTNAG	1 cut(s)	64
DpnI	GATC	2 cut(s)	240, 387
DpnII	GATC	2 cut(s)	238, 385
EaeI	YGGCCR	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	114
EcoO109I	RGGNCCY	2 cut(s)	110, 111
EcoRII	CCWGG	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	1 cut(s)	374
FaiI	YATR	9 cut(s)	105, 136, 147, 288, 302, 338, 340, 342, 372
FatI	CATG	1 cut(s)	370
FokI	GGATG	2 cut(s)	290, 404
FriOI	GRGCYC	1 cut(s)	114
FspBI	CTAG	2 cut(s)	117, 167
GlaI	GCGC	1 cut(s)	252
HaeIII	GGCC	2 cut(s)	112, 305
HapII	CCGG	1 cut(s)	389
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	1 cut(s)	374
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	2 cut(s)	163, 351
HpaII	CCGG	1 cut(s)	389
Hpy188III	TCNNGA	1 cut(s)	389
HpyCH4V	TGCA	3 cut(s)	134, 152, 206
HpyF3I	CTNAG	1 cut(s)	64
Hsp92II	CATG	1 cut(s)	374
HspAI	GCGC	1 cut(s)	251
Kpn2I	TCCGGA	1 cut(s)	388
Kzo9I	GATC	2 cut(s)	238, 385
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	7 cut(s)	29, 54, 56, 68, 216, 361, 402
MaeI	CTAG	2 cut(s)	117, 167
MaeIII	GTNAC	1 cut(s)	426
MalI	GATC	2 cut(s)	240, 387
MboI	GATC	2 cut(s)	238, 385
MboII	GAAGA	2 cut(s)	184, 324
MhlI	GDGCHC	1 cut(s)	114
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	4 cut(s)	37, 74, 96, 262
MluNI	TGGCCA	1 cut(s)	305
MlyI	GAGTC	1 cut(s)	360
MnlI	CCTC	8 cut(s)	19, 100, 124, 138, 148, 151, 186, 400
Mox20I	TGGCCA	1 cut(s)	305
MroI	TCCGGA	1 cut(s)	388
MscI	TGGCCA	1 cut(s)	305
MseI	TTAA	3 cut(s)	84, 99, 422
MslI	CAYNNNNRTG	1 cut(s)	139
Msp20I	TGGCCA	1 cut(s)	305
MspCI	CTTAAG	1 cut(s)	421
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	44
NdeII	GATC	2 cut(s)	238, 385
NlaIII	CATG	1 cut(s)	374
NlaIV	GGNNCC	2 cut(s)	111, 112
PfeI	GAWTC	1 cut(s)	163
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
PsiI	TTATAA	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	2 cut(s)	111, 112
PspOMI	GGGCCC	1 cut(s)	110
PspPI	GGNCC	2 cut(s)	110, 111
PstNI	CAGNNNCTG	1 cut(s)	236
RseI	CAYNNNNRTG	1 cut(s)	139
SaqAI	TTAA	3 cut(s)	84, 99, 422
Sau3AI	GATC	2 cut(s)	238, 385
Sau96I	GGNCC	2 cut(s)	110, 111
SchI	GAGTC	1 cut(s)	360
ScrFI	CCNGG	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	6 cut(s)	197, 238, 348, 404, 411, 428
SmiMI	CAYNNNNRTG	1 cut(s)	139
SmlI	CTYRAG	1 cut(s)	421
SmoI	CTYRAG	1 cut(s)	421
Sse9I	AATT	4 cut(s)	37, 74, 96, 262
SspI	AATATT	1 cut(s)	88
SspMI	CTAG	2 cut(s)	117, 167
StyD4I	CCNGG	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	402
TaqI	TCGA	1 cut(s)	354
TasI	AATT	4 cut(s)	37, 74, 96, 262
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	3 cut(s)	84, 99, 422
Tru9I	TTAA	3 cut(s)	84, 99, 422
TspDTI	ATGAA	3 cut(s)	194, 325, 332
TspGWI	ACGGA	1 cut(s)	212
Vha464I	CTTAAG	1 cut(s)	421
XapI	RAATTY	1 cut(s)	74
XspI	CTAG	2 cut(s)	117, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.