Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006376.1

Orthogroup ID

OG0003254

Physical Location & Seq

Genomic Coordinates Reverse (-)

81712 .. 85816

Gene Structure 4105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006376.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

atgaaggattggttgaggtttagtgttgcattttggcacacattccgtggaacaggagctgacccattcggtgcgcctacaaaaaattggccttgggaggatggaactaactctgttgctatggccaagagaagaatgaaagccaactttgagttcataaataagcttggagtcgataggtggtgtttccatgacagggatattgctccggatggcaaaaccttggaggaaactaataaaaacttggatgaggtggtggcccttgccaaggagcttcagggaaccaaaattcgacctttgtggggcacagctcagctgtttatgcatcctcgctacatgcacggtggtgccactagccctgaactaggtgtatatgcatatgctgctgctcaagttaagaaagctattgaggtcacgcattatttaggtggtgaaaattatgtgttttggggtggccgtgagggttaccagagtctcctgaataccgacatgggacgagagcttgatcatctggcaaggtttcttgaagctgctgttgcttacaagaagaaaattggattcaatggaacactgttgattgaaccgaagcctcaagaacctactaaacaccagtatgactgggatgctgcaacaacagcaaatttcctgcgaaaatatggccttataggagaatttaaacttaacattgagtgcaaccatgccactctatctggtcacagctgtcatcatgagcttgaaactgcaagactcaatggtttactgggaaacattgatgcaaatactggagatcctcaaattggatgggatacagatgaatttctcacagacattgcagaggcaactcgagttatgcttactgtggtaaaaaatggaggattggcaccaggaggcttcaactttgatgcaaaattacggagggaaagcacagatgtcgaggatttgttcattgctcatatcagtggaatggataccctggcccgtggactccgtaatgtcgccaagcttattgaggacggttctctggctgagcttgttcgcaaacgatatgagagttttgatacagatgttggggcccagatagaggctggtaagggtgattttgaatatcttgagaagaaggccatggaatggggtgaaccaaaagttccttctgccaagcaggaacttgcggagaggcatttccagtctgctttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00040 ko00051 ko01100 map00040 map00051 map01100

Pfam Domains

Protein Families

No domains found.

Protein Analysis

398

Amino Acids

44.64

Weight (kDa)

5.85

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57655 AT5G57655
fragaria_vesca	FvH4_4g32520 FvH4_4g32520 FvH4_4g32520
malus_domestica	MD13G1265000.v1.1 MD16G1265900.v1.1
prunus_persica	Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1
pyrus_communis	pycom13g23640 pycom16g23510
rosa_chinensis	RchiOBHm_Chr4g0403601 RchiOBHm_Chr5g0036521 RchiOBHm_Chr5g0046871
rosa_laevigata	RLG00000008967
rosa_multiflora	Rmu_co8193382.1_g000001 Rmu_sc0006376.1_g000016 Rmu_sc0007038.1_g000004
rosa_roxburghii	Rroxscaffold_5G00348230
rosa_rugosa	Rorug04G0044500 Rorug04G0044600 Rorug04G0044600
rosa_samantha	Rh4AG119600 Rh4AG148500 Rh4BG112800 Rh4BG186000 Rh4CG026500 Rh4CG127600 Rh4DG112300 Rh5BG320700 Rh5CG483800 Rh5DG258300 Rh5DG331400 Rh6AG078400
rosa_wichuraiana	Rw4G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	347, 880
AccB7I	CCANNNNNTGG	1 cut(s)	1128
AccIII	TCCGGA	1 cut(s)	208
AciI	CCGC	1 cut(s)	1169
AclWI	GGATC	1 cut(s)	782
AcoI	YGGCCR	2 cut(s)	123, 454
AcsI	RAATTY	4 cut(s)	288, 640, 671, 815
AcuI	CTGAAG	1 cut(s)	260
AfiI	CCNNNNNNNGG	7 cut(s)	196, 268, 302, 365, 797, 1081, 1128
AgsI	TTSAA	6 cut(s)	527, 562, 581, 737, 895, 1103
AjnI	CCWGG	2 cut(s)	883, 972
AjuI	GAANNNNNNNTTGG	4 cut(s)	137, 169, 1132, 1164
AleI	CACNNNNGTG	1 cut(s)	345
Alw26I	GTCTC	1 cut(s)	479
AlwI	GGATC	1 cut(s)	782
AlwNI	CAGNNNCTG	1 cut(s)	59
Ama87I	CYCGRG	1 cut(s)	843
Aor13HI	TCCGGA	1 cut(s)	208
AoxI	GGCC	8 cut(s)	89, 123, 258, 454, 658, 975, 1071, 1119
ApaI	GGGCCC	1 cut(s)	1075
ApeKI	GCWGC	4 cut(s)	383, 386, 530, 626
ApoI	RAATTY	4 cut(s)	288, 640, 671, 815
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	4 cut(s)	259, 976, 1071, 1072
AsuHPI	GGTGA	3 cut(s)	443, 1106, 1145
AvaI	CYCGRG	1 cut(s)	843
BaeGI	GKGCMC	2 cut(s)	308, 1075
BaeI	ACNNNNGTAYC	2 cut(s)	1050, 1083
BalI	TGGCCA	1 cut(s)	125
BanI	GGYRCC	2 cut(s)	347, 880
BanII	GRGCYC	1 cut(s)	1075
BbvI	GCAGC	4 cut(s)	370, 373, 517, 613
BccI	CCATC	3 cut(s)	95, 206, 795
BceAI	ACGGC	1 cut(s)	441
BcgI	CGANNNNNNTGC	2 cut(s)	913, 947
BciT130I	CCWGG	2 cut(s)	885, 974
BciVI	GTATCC	2 cut(s)	799, 961
BclI	TGATCA	1 cut(s)	505
BcoDI	GTCTC	1 cut(s)	479
BfaI	CTAG	2 cut(s)	354, 365
BfuI	GTATCC	2 cut(s)	799, 961
BisI	GCNGC	4 cut(s)	384, 387, 531, 627
BlpI	GCTNAGC	2 cut(s)	312, 1026
BlsI	GCNGC	4 cut(s)	385, 388, 532, 628
Bme1390I	CCNGG	2 cut(s)	885, 974
BmeT110I	CYCGRG	1 cut(s)	843
BmgT120I	GGNCC	4 cut(s)	259, 976, 1071, 1072
BmiI	GGNNCC	5 cut(s)	283, 349, 882, 1072, 1073
BmrFI	CCNGG	2 cut(s)	885, 974
BmrI	ACTGGG	2 cut(s)	628, 770
BmsI	GCATC	4 cut(s)	334, 613, 763, 892
BmuI	ACTGGG	2 cut(s)	628, 770
BpmI	CTGGAG	1 cut(s)	804
Bpu1102I	GCTNAGC	2 cut(s)	312, 1026
BpuEI	CTTGAG	3 cut(s)	375, 576, 1130
BsaJI	CCNNGG	7 cut(s)	46, 92, 222, 267, 972, 979, 1122
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	7 cut(s)	196, 268, 302, 365, 797, 1081, 1128
Bse1I	ACTGG	5 cut(s)	610, 623, 765, 787, 1183
Bse3DI	GCAATG	2 cut(s)	828, 945
BseAI	TCCGGA	1 cut(s)	208
BseBI	CCWGG	2 cut(s)	885, 974
BseDI	CCNNGG	7 cut(s)	46, 92, 222, 267, 972, 979, 1122
BseGI	GGATG	6 cut(s)	106, 217, 253, 325, 628, 806
BseLI	CCNNNNNNNGG	7 cut(s)	196, 268, 302, 365, 797, 1081, 1128
BseMI	GCAATG	2 cut(s)	828, 945
BseMII	CTCAG	2 cut(s)	326, 1017
BseNI	ACTGG	5 cut(s)	610, 623, 765, 787, 1183
BseSI	GKGCMC	2 cut(s)	308, 1075
BseXI	GCAGC	4 cut(s)	370, 373, 517, 613
BshFI	GGCC	8 cut(s)	91, 125, 260, 456, 660, 977, 1073, 1121
BshNI	GGYRCC	2 cut(s)	347, 880
BsiHKCI	CYCGRG	1 cut(s)	843
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	507
BslI	CCNNNNNNNGG	7 cut(s)	196, 268, 302, 365, 797, 1081, 1128
BsmAI	GTCTC	1 cut(s)	479
BsmFI	GGGAC	1 cut(s)	507
BsnI	GGCC	8 cut(s)	91, 125, 260, 456, 660, 977, 1073, 1121
BsoBI	CYCGRG	1 cut(s)	843
Bsp120I	GGGCCC	1 cut(s)	1071
Bsp1286I	GDGCHC	2 cut(s)	308, 1075
Bsp13I	TCCGGA	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	505, 787
Bsp1720I	GCTNAGC	2 cut(s)	312, 1026
Bsp19I	CCATGG	1 cut(s)	1122
BspACI	CCGC	1 cut(s)	1169
BspANI	GGCC	8 cut(s)	91, 125, 260, 456, 660, 977, 1073, 1121
BspCNI	CTCAG	2 cut(s)	325, 1018
BspEI	TCCGGA	1 cut(s)	208
BspHI	TCATGA	1 cut(s)	727
BspLI	GGNNCC	5 cut(s)	283, 349, 882, 1072, 1073
BspPI	GGATC	1 cut(s)	782
BspT107I	GGYRCC	2 cut(s)	347, 880
BsrDI	GCAATG	2 cut(s)	828, 945
BsrI	ACTGG	5 cut(s)	610, 623, 765, 787, 1183
BssECI	CCNNGG	7 cut(s)	46, 92, 222, 267, 972, 979, 1122
BssMI	GATC	2 cut(s)	505, 787
BssT1I	CCWWGG	4 cut(s)	92, 222, 267, 1122
Bst2UI	CCWGG	2 cut(s)	885, 974
Bst4CI	ACNGT	4 cut(s)	344, 573, 859, 1016
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstDEI	CTNAG	2 cut(s)	312, 1026
BstDSI	CCRYGG	3 cut(s)	46, 979, 1122
BstEII	GGTNACC	1 cut(s)	464
BstENI	CCTNNNNNAGG	2 cut(s)	266, 363
BstF5I	GGATG	6 cut(s)	106, 217, 253, 325, 628, 806
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	2 cut(s)	508, 790
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	2 cut(s)	505, 787
BstMWI	GCNNNNNNNGC	4 cut(s)	322, 383, 536, 635
BstNI	CCWGG	2 cut(s)	885, 974
BstNSI	RCATGY	1 cut(s)	340
BstPI	GGTNACC	1 cut(s)	464
BstSCI	CCNGG	2 cut(s)	883, 972
BstSLI	GKGCMC	2 cut(s)	308, 1075
BstV1I	GCAGC	4 cut(s)	370, 373, 517, 613
BstX2I	RGATCY	1 cut(s)	787
BstYI	RGATCY	1 cut(s)	787
BsuI	GTATCC	2 cut(s)	799, 961
BsuRI	GGCC	8 cut(s)	91, 125, 260, 456, 660, 977, 1073, 1121
BtgI	CCRYGG	3 cut(s)	46, 979, 1122
BtsCI	GGATG	6 cut(s)	106, 217, 253, 325, 628, 806
BtsIMutI	CAGTG	2 cut(s)	569, 964
CaiI	CAGNNNCTG	1 cut(s)	59
CciI	TCATGA	1 cut(s)	727
CfoI	GCGC	1 cut(s)	76
Cfr13I	GGNCC	4 cut(s)	259, 976, 1071, 1072
CviAII	CATG	6 cut(s)	191, 337, 490, 698, 728, 1123
DdeI	CTNAG	2 cut(s)	312, 1026
DpnI	GATC	2 cut(s)	507, 789
DpnII	GATC	2 cut(s)	505, 787
DraI	TTTAAA	1 cut(s)	676
EaeI	YGGCCR	2 cut(s)	123, 454
Eco130I	CCWWGG	4 cut(s)	92, 222, 267, 1122
Eco24I	GRGCYC	1 cut(s)	1075
Eco57I	CTGAAG	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	843
Eco91I	GGTNACC	1 cut(s)	464
EcoNI	CCTNNNNNAGG	2 cut(s)	266, 363
EcoO109I	RGGNCCY	1 cut(s)	1071
EcoO65I	GGTNACC	1 cut(s)	464
EcoRII	CCWGG	2 cut(s)	883, 972
EcoT14I	CCWWGG	4 cut(s)	92, 222, 267, 1122
EcoT22I	ATGCAT	2 cut(s)	327, 379
EcoT38I	GRGCYC	1 cut(s)	1075
ErhI	CCWWGG	4 cut(s)	92, 222, 267, 1122
FaeI	CATG	6 cut(s)	194, 340, 493, 701, 731, 1126
FaqI	GGGAC	1 cut(s)	507
FatI	CATG	6 cut(s)	190, 336, 489, 697, 727, 1122
FauNDI	CATATG	1 cut(s)	379
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	4 cut(s)	384, 387, 531, 627
FokI	GGATG	6 cut(s)	113, 224, 260, 312, 635, 813
FriOI	GRGCYC	1 cut(s)	1075
Fsp4HI	GCNGC	4 cut(s)	384, 387, 531, 627
FspBI	CTAG	2 cut(s)	354, 365
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	4 cut(s)	384, 387, 531, 627
GsuI	CTGGAG	1 cut(s)	804
HaeIII	GGCC	8 cut(s)	91, 125, 260, 456, 660, 977, 1073, 1121
HapII	CCGG	1 cut(s)	209
HhaI	GCGC	1 cut(s)	76
Hin1II	CATG	6 cut(s)	194, 340, 493, 701, 731, 1126
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HindIII	AAGCTT	2 cut(s)	164, 1001
HinfI	GANTC	5 cut(s)	171, 472, 558, 747, 984
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	3 cut(s)	443, 1106, 1145
Hpy166II	GTNNAC	3 cut(s)	758, 983, 1136
Hpy188III	TCNNGA	6 cut(s)	209, 478, 524, 593, 728, 1109
Hpy8I	GTNNAC	3 cut(s)	758, 983, 1136
HpyAV	CCTTC	2 cut(s)	1111, 1158
HpyCH4III	ACNGT	4 cut(s)	344, 573, 859, 1016
HpyF10VI	GCNNNNNNNGC	4 cut(s)	322, 383, 536, 635
HpyF3I	CTNAG	2 cut(s)	312, 1026
Hsp92II	CATG	6 cut(s)	194, 340, 493, 701, 731, 1126
HspAI	GCGC	1 cut(s)	74
Kpn2I	TCCGGA	1 cut(s)	208
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	2 cut(s)	505, 787
LmnI	GCTCC	3 cut(s)	56, 211, 271
Lsp1109I	GCAGC	4 cut(s)	370, 373, 517, 613
LweI	GCATC	4 cut(s)	334, 613, 763, 892
MaeI	CTAG	2 cut(s)	354, 365
MaeIII	GTNAC	3 cut(s)	412, 464, 713
MalI	GATC	2 cut(s)	507, 789
MboI	GATC	2 cut(s)	505, 787
MboII	GAAGA	3 cut(s)	144, 559, 1126
MflI	RGATCY	1 cut(s)	787
MhlI	GDGCHC	2 cut(s)	308, 1075
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	9 cut(s)	85, 288, 436, 552, 640, 671, 795, 815, 908
MluNI	TGGCCA	1 cut(s)	125
MlyI	GAGTC	4 cut(s)	180, 481, 741, 978
Mox20I	TGGCCA	1 cut(s)	125
Mph1103I	ATGCAT	2 cut(s)	327, 379
MroI	TCCGGA	1 cut(s)	208
MscI	TGGCCA	1 cut(s)	125
MseI	TTAA	3 cut(s)	396, 675, 681
MslI	CAYNNNNRTG	3 cut(s)	345, 612, 957
Msp20I	TGGCCA	1 cut(s)	125
MspA1I	CMGCKG	2 cut(s)	316, 720
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	2 cut(s)	885, 974
MvaI	CCWGG	2 cut(s)	885, 974
MwoI	GCNNNNNNNGC	4 cut(s)	322, 383, 536, 635
NcoI	CCATGG	1 cut(s)	1122
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	2 cut(s)	505, 787
NlaIII	CATG	6 cut(s)	194, 340, 493, 701, 731, 1126
NlaIV	GGNNCC	5 cut(s)	283, 349, 882, 1072, 1073
NmuCI	GTSAC	2 cut(s)	412, 713
NsiI	ATGCAT	2 cut(s)	327, 379
NspI	RCATGY	1 cut(s)	340
OliI	CACNNNNGTG	1 cut(s)	345
PaeR7I	CTCGAG	1 cut(s)	843
PagI	TCATGA	1 cut(s)	727
PfeI	GAWTC	1 cut(s)	558
PflMI	CCANNNNNTGG	1 cut(s)	1128
PkrI	GCNGC	4 cut(s)	385, 388, 532, 628
PleI	GAGTC	4 cut(s)	179, 480, 741, 978
PpsI	GAGTC	4 cut(s)	179, 480, 741, 978
Psp6I	CCWGG	2 cut(s)	883, 972
PspEI	GGTNACC	1 cut(s)	464
PspGI	CCWGG	2 cut(s)	883, 972
PspN4I	GGNNCC	5 cut(s)	283, 349, 882, 1072, 1073
PspOMI	GGGCCC	1 cut(s)	1071
PspPI	GGNCC	4 cut(s)	259, 976, 1071, 1072
PspXI	VCTCGAGB	1 cut(s)	843
PstNI	CAGNNNCTG	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	787
PvuII	CAGCTG	2 cut(s)	316, 720
RseI	CAYNNNNRTG	3 cut(s)	345, 612, 957
SaqAI	TTAA	3 cut(s)	396, 675, 681
SatI	GCNGC	4 cut(s)	384, 387, 531, 627
Sau3AI	GATC	2 cut(s)	505, 787
Sau96I	GGNCC	4 cut(s)	259, 976, 1071, 1072
SchI	GAGTC	4 cut(s)	180, 481, 741, 978
ScrFI	CCNGG	2 cut(s)	885, 974
SduI	GDGCHC	2 cut(s)	308, 1075
SfaNI	GCATC	4 cut(s)	334, 613, 763, 892
Sfr274I	CTCGAG	1 cut(s)	843
SlaI	CTCGAG	1 cut(s)	843
SmiMI	CAYNNNNRTG	3 cut(s)	345, 612, 957
SmlI	CTYRAG	4 cut(s)	390, 591, 843, 1109
SmoI	CTYRAG	4 cut(s)	390, 591, 843, 1109
Sse9I	AATT	9 cut(s)	85, 288, 436, 552, 640, 671, 795, 815, 908
SsiI	CCGC	1 cut(s)	1169
SspMI	CTAG	2 cut(s)	354, 365
StyD4I	CCNGG	2 cut(s)	883, 972
StyI	CCWWGG	4 cut(s)	92, 222, 267, 1122
TaaI	ACNGT	4 cut(s)	344, 573, 859, 1016
TaqI	TCGA	4 cut(s)	174, 292, 844, 933
TasI	AATT	9 cut(s)	85, 288, 436, 552, 640, 671, 795, 815, 908
TfiI	GAWTC	1 cut(s)	558
Tru1I	TTAA	3 cut(s)	396, 675, 681
Tru9I	TTAA	3 cut(s)	396, 675, 681
TscAI	CASTG	2 cut(s)	576, 964
TseFI	GTSAC	2 cut(s)	412, 713
TseI	GCWGC	4 cut(s)	383, 386, 530, 626
Tsp45I	GTSAC	2 cut(s)	412, 713
TspDTI	ATGAA	5 cut(s)	17, 145, 152, 828, 934
TspGWI	ACGGA	3 cut(s)	35, 928, 977
TspRI	CASTG	2 cut(s)	576, 964
Van91I	CCANNNNNTGG	1 cut(s)	1128
XagI	CCTNNNNNAGG	2 cut(s)	266, 363
XapI	RAATTY	4 cut(s)	288, 640, 671, 815
XceI	RCATGY	1 cut(s)	340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1082
XhoI	CTCGAG	1 cut(s)	843
XspI	CTAG	2 cut(s)	354, 365
Zsp2I	ATGCAT	2 cut(s)	327, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.