Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003254

Physical Location & Seq

Genomic Coordinates Forward (+)

32511441 .. 32514753

Gene Structure 3313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG186000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTTGATGGGATACCCAGAAAAAGAGGAAACGCACAATTACCAGGGTTGCACCCAATTTTGCTTAGCAGGGGAATTTTTCCCTAATATTCCCAAAATTAAATATGAGGGCCCCTCTAGTAAGAACCCCCTTGCATACAAATGGTATAATGCAGAGGAGGAGATTCTGGGGAAGAAAATGAACGATTGGTTGAGGTTTAGTGTTGCATTTTGGCACACATTCCGTGGAACAGGAGCTGACCCATTCGGTGCACCTAAAAAAAATTGGCATTGGGAGGATGGAACTTATAACTCTGTTGCTATGGCCAAGAGAAGAAGAGAATGTGAAGTTTGGGACAAGAACATAACTGCTGAAGTGATGAAGTCCTTAAATATTCCAAAGGGAATACGTCGTGTGCTCTTCAGAACATTAAATACTGACAGTGACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00040 ko00051 ko01100 map00040 map00051 map01100

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

16.75

Weight (kDa)

8.94

Isoelectric Point (pI)

58.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57655 AT5G57655
fragaria_vesca	FvH4_4g32520 FvH4_4g32520 FvH4_4g32520
malus_domestica	MD13G1265000.v1.1 MD16G1265900.v1.1
prunus_persica	Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1
pyrus_communis	pycom13g23640 pycom16g23510
rosa_chinensis	RchiOBHm_Chr4g0403601 RchiOBHm_Chr5g0036521 RchiOBHm_Chr5g0046871
rosa_laevigata	RLG00000008967
rosa_multiflora	Rmu_co8193382.1_g000001 Rmu_sc0006376.1_g000016 Rmu_sc0007038.1_g000004
rosa_roxburghii	Rroxscaffold_5G00348230
rosa_rugosa	Rorug04G0044500 Rorug04G0044600 Rorug04G0044600
rosa_samantha	Rh4AG119600 Rh4AG148500 Rh4BG112800 Rh4BG186000 Rh4CG026500 Rh4CG127600 Rh4DG112300 Rh5BG320700 Rh5CG483800 Rh5DG258300 Rh5DG331400 Rh6AG078400
rosa_wichuraiana	Rw4G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	288
AcoI	YGGCCR	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	74
AcuI	CTGAAG	2 cut(s)	372, 385
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	1 cut(s)	236
AluI	AGCT	1 cut(s)	236
Alw21I	GWGCWC	2 cut(s)	253, 399
Alw44I	GTGCAC	1 cut(s)	249
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	2 cut(s)	109, 303
ApaI	GGGCCC	1 cut(s)	113
ApaLI	GTGCAC	1 cut(s)	249
ApoI	RAATTY	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	109, 110
BaeGI	GKGCMC	2 cut(s)	113, 253
BalI	TGGCCA	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	113
Bbv12I	GWGCWC	2 cut(s)	253, 399
BccI	CCATC	1 cut(s)	272
BciT130I	CCWGG	1 cut(s)	44
BciVI	GTATCC	1 cut(s)	5
BfaI	CTAG	1 cut(s)	117
BfuI	GTATCC	1 cut(s)	5
BlpI	GCTNAGC	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	109, 110
BmiI	GGNNCC	2 cut(s)	111, 112
BmrFI	CCNGG	1 cut(s)	44
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
Bpu1102I	GCTNAGC	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	43, 223
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	2 cut(s)	43, 223
BseGI	GGATG	1 cut(s)	283
BseRI	GAGGAG	2 cut(s)	170, 173
BseSI	GKGCMC	2 cut(s)	113, 253
BshFI	GGCC	2 cut(s)	111, 305
BsiHKAI	GWGCWC	2 cut(s)	253, 399
BslFI	GGGAC	1 cut(s)	347
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	111, 305
Bsp120I	GGGCCC	1 cut(s)	109
Bsp1286I	GDGCHC	3 cut(s)	113, 253, 399
Bsp1720I	GCTNAGC	1 cut(s)	64
BspANI	GGCC	2 cut(s)	111, 305
BspLI	GGNNCC	2 cut(s)	111, 112
BspQI	GCTCTTC	1 cut(s)	404
BssECI	CCNNGG	2 cut(s)	43, 223
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	1 cut(s)	422
Bst6I	CTCTTC	2 cut(s)	310, 404
BstDEI	CTNAG	1 cut(s)	64
BstDSI	CCRYGG	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	283
BstNI	CCWGG	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	42
BstSLI	GKGCMC	2 cut(s)	113, 253
BsuI	GTATCC	1 cut(s)	5
BsuRI	GGCC	2 cut(s)	111, 305
BtgI	CCRYGG	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	427
CaiI	CAGNNNCTG	1 cut(s)	236
Cfr13I	GGNCC	2 cut(s)	109, 110
CviJI	RGCY	3 cut(s)	111, 236, 305
CviKI_1	RGCY	3 cut(s)	111, 236, 305
DdeI	CTNAG	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	303
Eam1104I	CTCTTC	2 cut(s)	310, 404
EarI	CTCTTC	2 cut(s)	310, 404
Eco24I	GRGCYC	1 cut(s)	113
Eco57I	CTGAAG	2 cut(s)	372, 385
EcoO109I	RGGNCCY	2 cut(s)	109, 110
EcoRII	CCWGG	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	113
FaiI	YATR	6 cut(s)	105, 136, 147, 288, 302, 344
FaqI	GGGAC	1 cut(s)	347
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	1 cut(s)	113
FspBI	CTAG	1 cut(s)	117
HaeIII	GGCC	2 cut(s)	111, 305
HinfI	GANTC	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188I	TCNGA	1 cut(s)	404
Hpy8I	GTNNAC	1 cut(s)	251
Hpy99I	CGWCG	1 cut(s)	393
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	5 cut(s)	51, 134, 152, 206, 251
HpyF3I	CTNAG	1 cut(s)	64
HpySE526I	ACGT	1 cut(s)	388
LguI	GCTCTTC	1 cut(s)	404
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	6 cut(s)	29, 30, 54, 56, 152, 216
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	388
MaeIII	GTNAC	1 cut(s)	422
MboII	GAAGA	4 cut(s)	184, 324, 327, 391
MhlI	GDGCHC	3 cut(s)	113, 253, 399
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	5 cut(s)	37, 56, 74, 96, 262
MluNI	TGGCCA	1 cut(s)	305
MnlI	CCTC	7 cut(s)	19, 100, 124, 148, 151, 186, 268
Mox20I	TGGCCA	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	305
MseI	TTAA	3 cut(s)	99, 368, 410
MslI	CAYNNNNRTG	1 cut(s)	139
Msp20I	TGGCCA	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	44
NlaIV	GGNNCC	2 cut(s)	111, 112
NmuCI	GTSAC	1 cut(s)	422
PciSI	GCTCTTC	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	163
PsiI	TTATAA	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	2 cut(s)	111, 112
PspOMI	GGGCCC	1 cut(s)	109
PspPI	GGNCC	2 cut(s)	109, 110
PsrI	GAACNNNNNNTAC	2 cut(s)	397, 429
PstNI	CAGNNNCTG	1 cut(s)	236
RseI	CAYNNNNRTG	1 cut(s)	139
SapI	GCTCTTC	1 cut(s)	404
SaqAI	TTAA	3 cut(s)	99, 368, 410
Sau96I	GGNCC	2 cut(s)	109, 110
ScrFI	CCNGG	1 cut(s)	44
SduI	GDGCHC	3 cut(s)	113, 253, 399
SetI	ASST	4 cut(s)	197, 238, 256, 391
SmiMI	CAYNNNNRTG	1 cut(s)	139
Sse9I	AATT	5 cut(s)	37, 56, 74, 96, 262
SspI	AATATT	2 cut(s)	88, 373
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	422
TaiI	ACGT	1 cut(s)	391
TasI	AATT	5 cut(s)	37, 56, 74, 96, 262
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	3 cut(s)	99, 368, 410
Tru9I	TTAA	3 cut(s)	99, 368, 410
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	1 cut(s)	422
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	2 cut(s)	194, 374
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	1 cut(s)	427
VneI	GTGCAC	1 cut(s)	249
XapI	RAATTY	1 cut(s)	74
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.