Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003254

Physical Location & Seq

Genomic Coordinates Forward (+)

21096392 .. 21099875

Gene Structure 3484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g23640.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGTAGATAATCATCTTAGGGGGCTACTTATATTGATTTTAAATTTCAAGAATAAAAGTAACAAGTTTGAGTACCAAACTTCTAGTATTGAAGCTTTCAAATTTGAATTTCATTCTTCCATTTTACGTGCTTGTTTACGCGGATCTTCACACCCACTTTACAACACTATTCACAAGAAAACCATTTTATTTTATTTTCTCAAATCTCCATTCGCACTGCTGAGTCCTTGCCACCAGACAATCAAACAATCAAACGGCTGTAAGCTGCACCATCTTCCAATAAAACTGTCCTTAATCCTAACTGGTGCGAAATTGGATCGAAATAATAGGCAACAAATAATCCTGTCAAGTGACACATTTGCCCCCATTCTAGTTAAAATAGATGTACCAAATCGTTTGGAAATTCGAACCACTGTGGATGCTGTAGAAAAGAACGGTGATCGTCAGCTAATCCAATTCAATAAATTGAAACTAAAATTGTGGATTAAATTTGGAAAATCAGGTATACACAGTCACTGGGAACCGCCATTTTACATCATCATATTCGGAGAGCTCATCTCGTTCTGGCTATATTTGCATGAGACGCTGAAAATGAAGGCTGGGAGGATTTTGTTGCTTCTTCTTTGTTTGAATGTGGTTACATTTGGAGTGATTGCTGATTCGCCAACATGCCCCGCATCAGATCTTGGAAGTAGGTGCAGTGATTCTGATGAATGGGAAGGGGAATTTTTCCCTGGCATTCCCAAAATTAAGTATGAGGAGTGGATGAGGTTTAGTGTTGCATTTTGGCACACATTCTGTGGAACAGGAGGTGACCCATTTGGTGCACCTACAAAGAATTGGCCATGGGAGGATGGAACTAATTCTGTGGCTATGGCAAAGCGAAGAATGAGAGCCAACTTTCAGTTCATAAACAAGCTTGGAGTTGATAGGTGGTGTTTCCTTGACAGGGATATAGCTCTCGATGGCAAAACCTTGGAGGAATCTAATAAAAACTTGGATGAAGTGGTGGCCCTTGCTAAGGAGCTGCAGGTTACACATTATGTAGGGGGTGAAAGTTATGTTTTCTGGGGTGGCCGTGAGGGTTACCAGAGTCTCTTGAATACTGACTTGGGAAGAGAGCTTGATCATCTGGGACATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00040 ko00051 ko01100 map00040 map00051 map01100

Pfam Domains

Protein Families

No domains found.

Protein Analysis

382

Amino Acids

43.64

Weight (kDa)

8.73

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57655 AT5G57655
fragaria_vesca	FvH4_4g32520 FvH4_4g32520 FvH4_4g32520
malus_domestica	MD13G1265000.v1.1 MD16G1265900.v1.1
prunus_persica	Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1
pyrus_communis	pycom13g23640 pycom16g23510
rosa_chinensis	RchiOBHm_Chr4g0403601 RchiOBHm_Chr5g0036521 RchiOBHm_Chr5g0046871
rosa_laevigata	RLG00000008967
rosa_multiflora	Rmu_co8193382.1_g000001 Rmu_sc0006376.1_g000016 Rmu_sc0007038.1_g000004
rosa_roxburghii	Rroxscaffold_5G00348230
rosa_rugosa	Rorug04G0044500 Rorug04G0044600 Rorug04G0044600
rosa_samantha	Rh4AG119600 Rh4AG148500 Rh4BG112800 Rh4BG186000 Rh4CG026500 Rh4CG127600 Rh4DG112300 Rh5BG320700 Rh5CG483800 Rh5DG258300 Rh5DG331400 Rh6AG078400
rosa_wichuraiana	Rw4G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1021
AccI	GTMKAC	1 cut(s)	505
AccII	CGCG	1 cut(s)	141
AciI	CCGC	3 cut(s)	141, 524, 675
AclWI	GGATC	2 cut(s)	151, 324
AcoI	YGGCCR	2 cut(s)	842, 1075
AcsI	RAATTY	6 cut(s)	43, 101, 107, 402, 488, 725
AfaI	GTAC	2 cut(s)	74, 387
AfiI	CCNNNNNNNGG	2 cut(s)	949, 1021
AgsI	TTSAA	8 cut(s)	49, 92, 100, 107, 460, 469, 631, 1102
AjnI	CCWGG	1 cut(s)	733
AjuI	GAANNNNNNNTTGG	4 cut(s)	890, 922, 1094, 1126
AluBI	AGCT	8 cut(s)	95, 265, 448, 553, 919, 959, 1027, 1123
AluI	AGCT	8 cut(s)	95, 265, 448, 553, 919, 959, 1027, 1123
Alw21I	GWGCWC	2 cut(s)	555, 829
Alw26I	GTCTC	2 cut(s)	575, 1100
Alw44I	GTGCAC	1 cut(s)	825
AlwI	GGATC	2 cut(s)	151, 324
AlwNI	CAGNNNCTG	1 cut(s)	516
AoxI	GGCC	3 cut(s)	842, 1011, 1075
ApaLI	GTGCAC	1 cut(s)	825
ApeKI	GCWGC	2 cut(s)	265, 1027
ApoI	RAATTY	6 cut(s)	43, 101, 107, 402, 488, 725
Asp700I	GAANNNNTTC	1 cut(s)	862
AspS9I	GGNCC	1 cut(s)	1012
AsuHPI	GGTGA	3 cut(s)	449, 824, 1064
AsuII	TTCGAA	1 cut(s)	406
BaeGI	GKGCMC	1 cut(s)	829
BalI	TGGCCA	1 cut(s)	844
BanII	GRGCYC	1 cut(s)	555
Bbv12I	GWGCWC	2 cut(s)	555, 829
BbvI	GCAGC	2 cut(s)	252, 1014
BccI	CCATC	3 cut(s)	279, 848, 959
BceAI	ACGGC	2 cut(s)	271, 1062
BciT130I	CCWGG	1 cut(s)	735
BclI	TGATCA	1 cut(s)	1126
BcoDI	GTCTC	2 cut(s)	575, 1100
BfaI	CTAG	2 cut(s)	84, 371
BfmI	CTRYAG	2 cut(s)	423, 1028
BfuAI	ACCTGC	1 cut(s)	1021
BglII	AGATCT	1 cut(s)	682
BisI	GCNGC	2 cut(s)	266, 1028
BlsI	GCNGC	2 cut(s)	267, 1029
Bme1390I	CCNGG	1 cut(s)	735
BmgT120I	GGNCC	1 cut(s)	1012
BmiI	GGNNCC	1 cut(s)	522
BmrFI	CCNGG	1 cut(s)	735
BmrI	ACTGGG	1 cut(s)	526
BmsI	GCATC	2 cut(s)	409, 686
BmuI	ACTGGG	1 cut(s)	526
BplI	GAGNNNNNCTC	2 cut(s)	542, 574
Bpu10I	CCTNAGC	1 cut(s)	1020
Bpu14I	TTCGAA	1 cut(s)	406
BsaAI	YACGTR	1 cut(s)	128
BsaBI	GATNNNNATC	1 cut(s)	12
BsaJI	CCNNGG	3 cut(s)	733, 845, 975
Bsc4I	CCNNNNNNNGG	2 cut(s)	949, 1021
Bse1I	ACTGG	2 cut(s)	307, 521
Bse8I	GATNNNNATC	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	735
BseDI	CCNNGG	3 cut(s)	733, 845, 975
BseGI	GGATG	4 cut(s)	424, 771, 859, 1006
BseJI	GATNNNNATC	1 cut(s)	12
BseLI	CCNNNNNNNGG	2 cut(s)	949, 1021
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	2 cut(s)	307, 521
BseRI	GAGGAG	1 cut(s)	773
BseSI	GKGCMC	1 cut(s)	829
BseXI	GCAGC	2 cut(s)	252, 1014
BseYI	CCCAGC	1 cut(s)	599
BsgI	GTGCAG	2 cut(s)	251, 718
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	3 cut(s)	844, 1013, 1077
BsiHKAI	GWGCWC	2 cut(s)	555, 829
BslI	CCNNNNNNNGG	2 cut(s)	949, 1021
BsmAI	GTCTC	2 cut(s)	575, 1100
BsmBI	CGTCTC	1 cut(s)	575
BsmI	GAATGC	1 cut(s)	738
BsnI	GGCC	3 cut(s)	844, 1013, 1077
Bsp119I	TTCGAA	1 cut(s)	406
Bsp1286I	GDGCHC	2 cut(s)	555, 829
Bsp143I	GATC	5 cut(s)	143, 316, 439, 682, 1126
Bsp19I	CCATGG	1 cut(s)	845
BspACI	CCGC	3 cut(s)	141, 524, 675
BspANI	GGCC	3 cut(s)	844, 1013, 1077
BspCNI	CTCAG	1 cut(s)	213
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	522
BspMAI	CTGCAG	1 cut(s)	1032
BspMI	ACCTGC	1 cut(s)	1021
BspPI	GGATC	2 cut(s)	151, 324
BspT104I	TTCGAA	1 cut(s)	406
BsrI	ACTGG	2 cut(s)	307, 521
BssECI	CCNNGG	3 cut(s)	733, 845, 975
BssMI	GATC	5 cut(s)	143, 316, 439, 682, 1126
BssNAI	GTATAC	1 cut(s)	506
BssT1I	CCWWGG	2 cut(s)	845, 975
Bst1107I	GTATAC	1 cut(s)	506
Bst2UI	CCWGG	1 cut(s)	735
Bst4CI	ACNGT	4 cut(s)	288, 415, 437, 512
Bst6I	CTCTTC	1 cut(s)	1111
BstBAI	YACGTR	1 cut(s)	128
BstBI	TTCGAA	1 cut(s)	406
BstDEI	CTNAG	3 cut(s)	17, 221, 1020
BstDSI	CCRYGG	1 cut(s)	845
BstEII	GGTNACC	2 cut(s)	812, 1085
BstENI	CCTNNNNNAGG	1 cut(s)	1019
BstF5I	GGATG	4 cut(s)	424, 771, 859, 1006
BstFNI	CGCG	1 cut(s)	141
BstKTI	GATC	5 cut(s)	146, 319, 442, 685, 1129
BstMAI	GTCTC	2 cut(s)	575, 1100
BstMBI	GATC	5 cut(s)	143, 316, 439, 682, 1126
BstMWI	GCNNNNNNNGC	2 cut(s)	574, 583
BstNI	CCWGG	1 cut(s)	735
BstNSI	RCATGY	1 cut(s)	672
BstPI	GGTNACC	2 cut(s)	812, 1085
BstSCI	CCNGG	1 cut(s)	733
BstSFI	CTRYAG	2 cut(s)	423, 1028
BstSLI	GKGCMC	1 cut(s)	829
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	2 cut(s)	252, 1014
BstX2I	RGATCY	2 cut(s)	143, 682
BstYI	RGATCY	2 cut(s)	143, 682
BstZ17I	GTATAC	1 cut(s)	506
BsuRI	GGCC	3 cut(s)	844, 1013, 1077
BtgI	CCRYGG	1 cut(s)	845
BtsCI	GGATG	4 cut(s)	424, 771, 859, 1006
BtsI	GCAGTG	2 cut(s)	215, 706
BtsIMutI	CAGTG	4 cut(s)	215, 411, 514, 706
BveI	ACCTGC	1 cut(s)	1021
CaiI	CAGNNNCTG	1 cut(s)	516
Cfr13I	GGNCC	1 cut(s)	1012
CseI	GACGC	1 cut(s)	592
Csp6I	GTAC	2 cut(s)	73, 386
CviAII	CATG	3 cut(s)	578, 669, 846
CviQI	GTAC	2 cut(s)	73, 386
DdeI	CTNAG	3 cut(s)	17, 221, 1020
DpnI	GATC	5 cut(s)	145, 318, 441, 684, 1128
DpnII	GATC	5 cut(s)	143, 316, 439, 682, 1126
DraI	TTTAAA	1 cut(s)	42
EaeI	YGGCCR	2 cut(s)	842, 1075
Eam1104I	CTCTTC	1 cut(s)	1111
EarI	CTCTTC	1 cut(s)	1111
Ecl136II	GAGCTC	1 cut(s)	553
Eco130I	CCWWGG	2 cut(s)	845, 975
Eco24I	GRGCYC	1 cut(s)	555
Eco53kI	GAGCTC	1 cut(s)	553
Eco91I	GGTNACC	2 cut(s)	812, 1085
EcoICRI	GAGCTC	1 cut(s)	553
EcoNI	CCTNNNNNAGG	1 cut(s)	1019
EcoO65I	GGTNACC	2 cut(s)	812, 1085
EcoRII	CCWGG	1 cut(s)	733
EcoT14I	CCWWGG	2 cut(s)	845, 975
EcoT38I	GRGCYC	1 cut(s)	555
ErhI	CCWWGG	2 cut(s)	845, 975
Esp3I	CGTCTC	1 cut(s)	575
FaeI	CATG	3 cut(s)	581, 672, 849
FatI	CATG	3 cut(s)	577, 668, 845
FauI	CCCGC	1 cut(s)	682
FbaI	TGATCA	1 cut(s)	1126
FblI	GTMKAC	1 cut(s)	505
Fnu4HI	GCNGC	2 cut(s)	266, 1028
FokI	GGATG	4 cut(s)	431, 778, 866, 1013
FriOI	GRGCYC	1 cut(s)	555
Fsp4HI	GCNGC	2 cut(s)	266, 1028
FspBI	CTAG	2 cut(s)	84, 371
GluI	GCNGC	2 cut(s)	266, 1028
GsaI	CCCAGC	1 cut(s)	603
HaeIII	GGCC	3 cut(s)	844, 1013, 1077
HgaI	GACGC	1 cut(s)	592
Hin1II	CATG	3 cut(s)	581, 672, 849
HindIII	AAGCTT	2 cut(s)	93, 917
HinfI	GANTC	5 cut(s)	223, 659, 704, 983, 1093
HphI	GGTGA	3 cut(s)	449, 824, 1064
Hpy166II	GTNNAC	3 cut(s)	137, 506, 827
Hpy188I	TCNGA	3 cut(s)	548, 682, 709
Hpy188III	TCNNGA	3 cut(s)	49, 962, 1099
Hpy8I	GTNNAC	3 cut(s)	137, 506, 827
HpyAV	CCTTC	2 cut(s)	589, 713
HpyCH4III	ACNGT	4 cut(s)	288, 415, 437, 512
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	6 cut(s)	268, 577, 699, 782, 827, 1030
HpyF10VI	GCNNNNNNNGC	2 cut(s)	574, 583
HpyF3I	CTNAG	3 cut(s)	17, 221, 1020
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	3 cut(s)	581, 672, 849
Ksp22I	TGATCA	1 cut(s)	1126
Kzo9I	GATC	5 cut(s)	143, 316, 439, 682, 1126
LmnI	GCTCC	1 cut(s)	1024
Lsp1109I	GCAGC	2 cut(s)	252, 1014
LweI	GCATC	2 cut(s)	409, 686
MaeI	CTAG	2 cut(s)	84, 371
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	7 cut(s)	59, 350, 512, 637, 812, 1033, 1085
MalI	GATC	5 cut(s)	145, 318, 441, 684, 1128
MboI	GATC	5 cut(s)	143, 316, 439, 682, 1126
MboII	GAAGA	6 cut(s)	108, 138, 266, 611, 897, 1128
MflI	RGATCY	2 cut(s)	143, 682
MhlI	GDGCHC	2 cut(s)	555, 829
MlsI	TGGCCA	1 cut(s)	844
MluNI	TGGCCA	1 cut(s)	844
MlyI	GAGTC	2 cut(s)	232, 1102
MnlI	CCTC	7 cut(s)	597, 751, 762, 803, 844, 973, 1075
Mox20I	TGGCCA	1 cut(s)	844
MroXI	GAANNNNTTC	1 cut(s)	862
MscI	TGGCCA	1 cut(s)	844
MseI	TTAA	5 cut(s)	41, 293, 375, 486, 750
Msp20I	TGGCCA	1 cut(s)	844
MspR9I	CCNGG	1 cut(s)	735
Mva1269I	GAATGC	1 cut(s)	738
MvaI	CCWGG	1 cut(s)	735
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	574, 583
NcoI	CCATGG	1 cut(s)	845
NdeII	GATC	5 cut(s)	143, 316, 439, 682, 1126
NlaIII	CATG	3 cut(s)	581, 672, 849
NlaIV	GGNNCC	1 cut(s)	522
NmuCI	GTSAC	3 cut(s)	350, 512, 812
NspI	RCATGY	1 cut(s)	672
NspV	TTCGAA	1 cut(s)	406
PctI	GAATGC	1 cut(s)	738
PdmI	GAANNNNTTC	1 cut(s)	862
PfeI	GAWTC	3 cut(s)	659, 704, 983
PkrI	GCNGC	2 cut(s)	267, 1029
PleI	GAGTC	2 cut(s)	231, 1101
PpsI	GAGTC	2 cut(s)	231, 1101
Ppu21I	YACGTR	1 cut(s)	128
Psp124BI	GAGCTC	1 cut(s)	555
Psp6I	CCWGG	1 cut(s)	733
PspEI	GGTNACC	2 cut(s)	812, 1085
PspFI	CCCAGC	1 cut(s)	599
PspGI	CCWGG	1 cut(s)	733
PspN4I	GGNNCC	1 cut(s)	522
PspPI	GGNCC	1 cut(s)	1012
PstI	CTGCAG	1 cut(s)	1032
PstNI	CAGNNNCTG	1 cut(s)	516
PsuI	RGATCY	2 cut(s)	143, 682
RsaI	GTAC	2 cut(s)	74, 387
RsaNI	GTAC	2 cut(s)	73, 386
SacI	GAGCTC	1 cut(s)	555
SaqAI	TTAA	5 cut(s)	41, 293, 375, 486, 750
SatI	GCNGC	2 cut(s)	266, 1028
Sau3AI	GATC	5 cut(s)	143, 316, 439, 682, 1126
Sau96I	GGNCC	1 cut(s)	1012
SchI	GAGTC	2 cut(s)	232, 1102
ScrFI	CCNGG	1 cut(s)	735
SduI	GDGCHC	2 cut(s)	555, 829
SfaNI	GCATC	2 cut(s)	409, 686
SfcI	CTRYAG	2 cut(s)	423, 1028
SfuI	TTCGAA	1 cut(s)	406
SsiI	CCGC	3 cut(s)	141, 524, 675
SspMI	CTAG	2 cut(s)	84, 371
SstI	GAGCTC	1 cut(s)	555
StyD4I	CCNGG	1 cut(s)	733
StyI	CCWWGG	2 cut(s)	845, 975
TaaI	ACNGT	4 cut(s)	288, 415, 437, 512
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	3 cut(s)	319, 406, 963
TfiI	GAWTC	3 cut(s)	659, 704, 983
Tru1I	TTAA	5 cut(s)	41, 293, 375, 486, 750
Tru9I	TTAA	5 cut(s)	41, 293, 375, 486, 750
TscAI	CASTG	4 cut(s)	222, 418, 521, 706
TseFI	GTSAC	3 cut(s)	350, 512, 812
TseI	GCWGC	2 cut(s)	265, 1027
Tsp45I	GTSAC	3 cut(s)	350, 512, 812
TspDTI	ATGAA	5 cut(s)	101, 608, 726, 898, 1017
TspRI	CASTG	4 cut(s)	222, 418, 521, 706
VneI	GTGCAC	1 cut(s)	825
XagI	CCTNNNNNAGG	1 cut(s)	1019
XapI	RAATTY	6 cut(s)	43, 101, 107, 402, 488, 725
XceI	RCATGY	1 cut(s)	672
XmiI	GTMKAC	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	862
XspI	CTAG	2 cut(s)	84, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.