Prupe.1G091900_v2.0.a1

Xylose isomerase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
6948733 .. 6954317
5585 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G091900.3

Sequence Viewer

Length: 1440 bp
ATGAAAATGAAGGCTGGGAGGATATTGTTGCTTCTTCTTTGTTTGAATGTGGTTACCTTTGGAGTGATTGCTGGTCCGCAAACATGTCCTGCATCGGATCTTGAAAGTGGGTGTAGTGATTCTGAAGAATGGAAAGGGGAATTTTTCCCTGGAATTCCCAAAATTAAGTATGAGGGCCCGTCTAGCAAGAACCCCCTATCCTTCAAATGGTATAATGCGGAAGAGGAAATTCTAGGGAAGAAAATGAAGGATTGGTTGAGGTTTAGTGTTGCATTTTGGCACACATTCCGTGGAACAGGAGGTGACCCATTTGGTGCACCTACAAAGAATTGGCCATGGGAGGATGGAACTAATTCTGTGGCTATGGCCAAAAGAAGAATGAGAGCCAACTTTGAGTTCATAAACAAGCTTGGAGTCGATAGGTGGTGTTTCCATGACAGGGATATAGCTCCTGATGGAGAAACCTTGGAGGAATCTAACAAAAACTTGGATGAAGTGGTGACCCTTGCTAAGGAGCTTCAGGGAAGCAAAATTCGACCTTTGTGGGGCACAGCTCAGCTGTTTCTGCATCCTCGCTACATGCATGGTGGTGCTACAAGCCCTGAAGTAGGTGTATATGCATATGCTGCTGCTCAAGTTAAGAAAGCCATTGAGGTCACACATTATTTAGGGGGCGAAAATTATGTCTTCTGGGGTGGCCGTGAGGGTTACCAGAGTCTCTTGAATACTGACATGGGACGAGAGCTTGATCATCTGGCACGGTTTCTTGAAGCTGCAGTTGCCTACAAGAAGAAAATTGGATTCAATGGGACACTGTTGATTGAACCCAAGCCTCAAGAACCTACCAAACACCAGTATGATTGGGATGCTGCAACATCTGCAAATTTCCTTCGAAAATATGGCCTAATAGGAGAATTTAAACTTAACATTGAGTGCAATCATGCCACGCTATCTGGTCACAGCTGTCACCATGAGCTTGAAACTGCAAGACTCAATGGTTTATTAGGAAATATTGATGCAAACACTGGAGATCCTCAGACTGGATGGGATACAGATCAATTTCTCACAGATATTGCAGAGGCAACTCTGGTTATGCTCACTGTAGTAAAGAATGGAGGAATTGCACCAGGAGGATTCAACTTCGATGCAAAATTACGGAGAGAAAGCACAGACGTTGAGGATTTGTTCATTGCTCATATTAGTGGAATGGATACCCTGGCGCGTGGGCTCCGAAATGTTGTGAAGCTCATTGAGGATGGTTCTCTGGATGAGCTTGTTCGCAAGCGGTATGAGAGTTTCGATACAGAAATTGGCGCACATATAGAGGCTGGTAAGGGTGATTTTGAGTATCTTGAGAAGAAGGCCATAGAATGGGGTGAACCCAGAGTTCCTTCTGCGAAGCAGGAACTTGCGGAGATGCTTTTCCAGTCGGTTTTGTAG

Protein Analysis

480

Amino Acids

53.58

Weight (kDa)

5.57

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1371
AccII CGCG 1 cut(s) 1222
AciI CCGC 4 cut(s) 77, 218, 1285, 1412
AclWI GGATC 2 cut(s) 105, 1025
AcoI YGGCCR 3 cut(s) 332, 366, 697
AcsI RAATTY 6 cut(s) 140, 153, 228, 531, 883, 914
AcuI CTGAAG 3 cut(s) 144, 503, 624
AfiI CCNNNNNNNGG 7 cut(s) 207, 439, 511, 545, 608, 1040, 1371
AflIII ACRYGT 1 cut(s) 83
AgsI TTSAA 9 cut(s) 46, 104, 205, 724, 770, 805, 824, 980, 1138
AjnI CCWGG 3 cut(s) 148, 1126, 1215
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
AloI GAACNNNNNNTCC 2 cut(s) 182, 214
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 1 cut(s) 722
Alw44I GTGCAC 1 cut(s) 315
AlwI GGATC 2 cut(s) 105, 1025
AoxI GGCC 6 cut(s) 175, 332, 366, 697, 901, 1362
ApaI GGGCCC 1 cut(s) 179
ApaLI GTGCAC 1 cut(s) 315
ApeKI GCWGC 4 cut(s) 626, 629, 773, 869
ApoI RAATTY 6 cut(s) 140, 153, 228, 531, 883, 914
ArsI GACNNNNNNTTYG 2 cut(s) 669, 701
Asp700I GAANNNNTTC 1 cut(s) 352
AspLEI GCGC 2 cut(s) 1222, 1316
AspS9I GGNCC 3 cut(s) 74, 175, 176
AsuHPI GGTGA 5 cut(s) 314, 511, 959, 1349, 1388
AsuII TTCGAA 1 cut(s) 892
AvaII GGWCC 1 cut(s) 74
BaeGI GKGCMC 3 cut(s) 179, 319, 551
BalI TGGCCA 2 cut(s) 334, 368
BanII GRGCYC 2 cut(s) 179, 1230
BbsI GAAGAC 1 cut(s) 679
Bbv12I GWGCWC 1 cut(s) 319
BbvI GCAGC 4 cut(s) 613, 616, 760, 856
BccI CCATC 4 cut(s) 338, 449, 1038, 1250
BceAI ACGGC 1 cut(s) 684
BciT130I CCWGG 3 cut(s) 150, 1128, 1217
BciVI GTATCC 2 cut(s) 1042, 1204
BclI TGATCA 1 cut(s) 748
BcoDI GTCTC 1 cut(s) 722
BfaI CTAG 2 cut(s) 183, 233
BfmI CTRYAG 2 cut(s) 774, 1101
BfuI GTATCC 2 cut(s) 1042, 1204
BisI GCNGC 4 cut(s) 627, 630, 774, 870
BlpI GCTNAGC 1 cut(s) 555
BlsI GCNGC 4 cut(s) 628, 631, 775, 871
Bme1390I CCNGG 3 cut(s) 150, 1128, 1217
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 3 cut(s) 74, 175, 176
BmiI GGNNCC 2 cut(s) 177, 1229
BmrFI CCNGG 3 cut(s) 150, 1128, 1217
BmsI GCATC 6 cut(s) 101, 577, 856, 1006, 1135, 1407
BpiI GAAGAC 1 cut(s) 679
BpmI CTGGAG 1 cut(s) 1047
Bpu10I CCTNAGC 1 cut(s) 510
Bpu1102I GCTNAGC 1 cut(s) 555
Bpu14I TTCGAA 1 cut(s) 892
BpuEI CTTGAG 3 cut(s) 618, 819, 1373
BsaBI GATNNNNATC 1 cut(s) 1053
BsaJI CCNNGG 5 cut(s) 148, 289, 335, 465, 1215
Bsc4I CCNNNNNNNGG 7 cut(s) 207, 439, 511, 545, 608, 1040, 1371
Bse1I ACTGG 4 cut(s) 853, 1030, 1045, 1426
Bse3DI GCAATG 1 cut(s) 1188
Bse8I GATNNNNATC 1 cut(s) 1053
BseBI CCWGG 3 cut(s) 150, 1128, 1217
BseDI CCNNGG 5 cut(s) 148, 289, 335, 465, 1215
BseGI GGATG 7 cut(s) 349, 496, 568, 871, 1049, 1261, 1273
BseJI GATNNNNATC 1 cut(s) 1053
BseLI CCNNNNNNNGG 7 cut(s) 207, 439, 511, 545, 608, 1040, 1371
BseMI GCAATG 1 cut(s) 1188
BseMII CTCAG 2 cut(s) 569, 1049
BseNI ACTGG 4 cut(s) 853, 1030, 1045, 1426
BseSI GKGCMC 3 cut(s) 179, 319, 551
BseXI GCAGC 4 cut(s) 613, 616, 760, 856
BseYI CCCAGC 1 cut(s) 14
Bsh1236I CGCG 1 cut(s) 1222
BshFI GGCC 6 cut(s) 177, 334, 368, 699, 903, 1364
BsiHKAI GWGCWC 1 cut(s) 319
BslFI GGGAC 2 cut(s) 750, 823
BslI CCNNNNNNNGG 7 cut(s) 207, 439, 511, 545, 608, 1040, 1371
BsmAI GTCTC 1 cut(s) 722
BsmFI GGGAC 2 cut(s) 750, 823
BsnI GGCC 6 cut(s) 177, 334, 368, 699, 903, 1364
Bsp119I TTCGAA 1 cut(s) 892
Bsp120I GGGCCC 1 cut(s) 175
Bsp1286I GDGCHC 4 cut(s) 179, 319, 551, 1230
Bsp143I GATC 4 cut(s) 97, 748, 1030, 1054
Bsp1720I GCTNAGC 1 cut(s) 555
Bsp19I CCATGG 1 cut(s) 335
BspACI CCGC 4 cut(s) 77, 218, 1285, 1412
BspANI GGCC 6 cut(s) 177, 334, 368, 699, 903, 1364
BspCNI CTCAG 2 cut(s) 568, 1048
BspFNI CGCG 1 cut(s) 1222
BspLI GGNNCC 2 cut(s) 177, 1229
BspMAI CTGCAG 1 cut(s) 778
BspPI GGATC 2 cut(s) 105, 1025
BspT104I TTCGAA 1 cut(s) 892
BsrDI GCAATG 1 cut(s) 1188
BsrI ACTGG 4 cut(s) 853, 1030, 1045, 1426
BssECI CCNNGG 5 cut(s) 148, 289, 335, 465, 1215
BssMI GATC 4 cut(s) 97, 748, 1030, 1054
BssT1I CCWWGG 2 cut(s) 335, 465
Bst2UI CCWGG 3 cut(s) 150, 1128, 1217
Bst4CI ACNGT 3 cut(s) 762, 816, 1102
Bst6I CTCTTC 1 cut(s) 216
BstAPI GCANNNNNTGC 2 cut(s) 626, 878
BstBI TTCGAA 1 cut(s) 892
BstC8I GCNNGC 1 cut(s) 1283
BstDEI CTNAG 3 cut(s) 510, 555, 1035
BstDSI CCRYGG 2 cut(s) 289, 335
BstEII GGTNACC 4 cut(s) 52, 302, 499, 707
BstENI CCTNNNNNAGG 2 cut(s) 509, 606
BstF5I GGATG 7 cut(s) 349, 496, 568, 871, 1049, 1261, 1273
BstFNI CGCG 1 cut(s) 1222
BstHHI GCGC 2 cut(s) 1222, 1316
BstKTI GATC 4 cut(s) 100, 751, 1033, 1057
BstMAI GTCTC 1 cut(s) 722
BstMBI GATC 4 cut(s) 97, 748, 1030, 1054
BstMWI GCNNNNNNNGC 5 cut(s) 183, 565, 626, 779, 878
BstNI CCWGG 3 cut(s) 150, 1128, 1217
BstNSI RCATGY 2 cut(s) 87, 583
BstPI GGTNACC 4 cut(s) 52, 302, 499, 707
BstSCI CCNGG 3 cut(s) 148, 1126, 1215
BstSFI CTRYAG 2 cut(s) 774, 1101
BstSLI GKGCMC 3 cut(s) 179, 319, 551
BstUI CGCG 1 cut(s) 1222
BstV1I GCAGC 4 cut(s) 613, 616, 760, 856
BstV2I GAAGAC 1 cut(s) 679
BstX2I RGATCY 2 cut(s) 97, 1030
BstYI RGATCY 2 cut(s) 97, 1030
BsuI GTATCC 2 cut(s) 1042, 1204
BsuRI GGCC 6 cut(s) 177, 334, 368, 699, 903, 1364
BtgI CCRYGG 2 cut(s) 289, 335
BtsCI GGATG 7 cut(s) 349, 496, 568, 871, 1049, 1261, 1273
BtsIMutI CAGTG 3 cut(s) 812, 1023, 1098
Cac8I GCNNGC 1 cut(s) 1283
CfoI GCGC 2 cut(s) 1222, 1316
Cfr13I GGNCC 3 cut(s) 74, 175, 176
CviAII CATG 8 cut(s) 84, 336, 434, 580, 584, 733, 941, 971
DdeI CTNAG 3 cut(s) 510, 555, 1035
DpnI GATC 4 cut(s) 99, 750, 1032, 1056
DpnII GATC 4 cut(s) 97, 748, 1030, 1054
DraI TTTAAA 1 cut(s) 919
EaeI YGGCCR 3 cut(s) 332, 366, 697
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco130I CCWWGG 2 cut(s) 335, 465
Eco24I GRGCYC 2 cut(s) 179, 1230
Eco47I GGWCC 1 cut(s) 74
Eco57I CTGAAG 3 cut(s) 144, 503, 624
Eco91I GGTNACC 4 cut(s) 52, 302, 499, 707
EcoNI CCTNNNNNAGG 2 cut(s) 509, 606
EcoO109I RGGNCCY 1 cut(s) 175
EcoO65I GGTNACC 4 cut(s) 52, 302, 499, 707
EcoRI GAATTC 1 cut(s) 153
EcoRII CCWGG 3 cut(s) 148, 1126, 1215
EcoT14I CCWWGG 2 cut(s) 335, 465
EcoT22I ATGCAT 2 cut(s) 585, 622
EcoT38I GRGCYC 2 cut(s) 179, 1230
ErhI CCWWGG 2 cut(s) 335, 465
FaeI CATG 8 cut(s) 87, 339, 437, 583, 587, 736, 944, 974
FaqI GGGAC 2 cut(s) 750, 823
FatI CATG 8 cut(s) 83, 335, 433, 579, 583, 732, 940, 970
FauNDI CATATG 1 cut(s) 622
FbaI TGATCA 1 cut(s) 748
Fnu4HI GCNGC 4 cut(s) 627, 630, 774, 870
FokI GGATG 7 cut(s) 356, 503, 555, 878, 1056, 1268, 1280
FriOI GRGCYC 2 cut(s) 179, 1230
Fsp4HI GCNGC 4 cut(s) 627, 630, 774, 870
FspBI CTAG 2 cut(s) 183, 233
GlaI GCGC 2 cut(s) 1221, 1315
GluI GCNGC 4 cut(s) 627, 630, 774, 870
GsaI CCCAGC 1 cut(s) 18
GsuI CTGGAG 1 cut(s) 1047
HaeIII GGCC 6 cut(s) 177, 334, 368, 699, 903, 1364
HhaI GCGC 2 cut(s) 1222, 1316
Hin1II CATG 8 cut(s) 87, 339, 437, 583, 587, 736, 944, 974
Hin6I GCGC 2 cut(s) 1220, 1314
HinP1I GCGC 2 cut(s) 1220, 1314
HindIII AAGCTT 1 cut(s) 407
HinfI GANTC 7 cut(s) 119, 414, 473, 715, 801, 990, 1134
HphI GGTGA 5 cut(s) 314, 511, 959, 1349, 1388
Hpy166II GTNNAC 2 cut(s) 317, 1379
Hpy188I TCNGA 4 cut(s) 97, 124, 1038, 1232
Hpy188III TCNNGA 7 cut(s) 101, 452, 721, 767, 836, 1265, 1352
Hpy8I GTNNAC 2 cut(s) 317, 1379
HpyAV CCTTC 6 cut(s) 4, 211, 241, 899, 1354, 1401
HpyCH4III ACNGT 3 cut(s) 762, 816, 1102
HpyCH4IV ACGT 1 cut(s) 1173
HpyF10VI GCNNNNNNNGC 5 cut(s) 183, 565, 626, 779, 878
HpyF3I CTNAG 3 cut(s) 510, 555, 1035
HpySE526I ACGT 1 cut(s) 1173
Hsp92II CATG 8 cut(s) 87, 339, 437, 583, 587, 736, 944, 974
HspAI GCGC 2 cut(s) 1220, 1314
Ksp22I TGATCA 1 cut(s) 748
Kzo9I GATC 4 cut(s) 97, 748, 1030, 1054
LmnI GCTCC 3 cut(s) 454, 514, 1233
Lsp1109I GCAGC 4 cut(s) 613, 616, 760, 856
LweI GCATC 6 cut(s) 101, 577, 856, 1006, 1135, 1407
MaeI CTAG 2 cut(s) 183, 233
MaeII ACGT 1 cut(s) 1173
MaeIII GTNAC 7 cut(s) 52, 302, 499, 655, 707, 956, 965
MalI GATC 4 cut(s) 99, 750, 1032, 1056
MboI GATC 4 cut(s) 97, 748, 1030, 1054
MboII GAAGA 8 cut(s) 26, 137, 233, 250, 387, 679, 802, 1369
MflI RGATCY 2 cut(s) 97, 1030
MhlI GDGCHC 4 cut(s) 179, 319, 551, 1230
MlsI TGGCCA 2 cut(s) 334, 368
MluNI TGGCCA 2 cut(s) 334, 368
MlyI GAGTC 3 cut(s) 423, 724, 984
Mox20I TGGCCA 2 cut(s) 334, 368
Mph1103I ATGCAT 2 cut(s) 585, 622
MroXI GAANNNNTTC 1 cut(s) 352
MscI TGGCCA 2 cut(s) 334, 368
MseI TTAA 4 cut(s) 165, 639, 918, 924
MslI CAYNNNNRTG 3 cut(s) 588, 855, 1200
Msp20I TGGCCA 2 cut(s) 334, 368
MspA1I CMGCKG 2 cut(s) 559, 963
MspR9I CCNGG 3 cut(s) 150, 1128, 1217
MvaI CCWGG 3 cut(s) 150, 1128, 1217
MvnI CGCG 1 cut(s) 1222
MwoI GCNNNNNNNGC 5 cut(s) 183, 565, 626, 779, 878
NcoI CCATGG 1 cut(s) 335
NdeI CATATG 1 cut(s) 622
NdeII GATC 4 cut(s) 97, 748, 1030, 1054
NlaIII CATG 8 cut(s) 87, 339, 437, 583, 587, 736, 944, 974
NlaIV GGNNCC 2 cut(s) 177, 1229
NmuCI GTSAC 5 cut(s) 302, 499, 655, 956, 965
NsiI ATGCAT 2 cut(s) 585, 622
NspI RCATGY 2 cut(s) 87, 583
NspV TTCGAA 1 cut(s) 892
PciI ACATGT 1 cut(s) 83
PdmI GAANNNNTTC 1 cut(s) 352
PfeI GAWTC 4 cut(s) 119, 473, 801, 1134
PflMI CCANNNNNTGG 1 cut(s) 1371
PkrI GCNGC 4 cut(s) 628, 631, 775, 871
PleI GAGTC 3 cut(s) 422, 723, 984
PpsI GAGTC 3 cut(s) 422, 723, 984
PscI ACATGT 1 cut(s) 83
Psp6I CCWGG 3 cut(s) 148, 1126, 1215
PspEI GGTNACC 4 cut(s) 52, 302, 499, 707
PspFI CCCAGC 1 cut(s) 14
PspGI CCWGG 3 cut(s) 148, 1126, 1215
PspN4I GGNNCC 2 cut(s) 177, 1229
PspOMI GGGCCC 1 cut(s) 175
PspPI GGNCC 3 cut(s) 74, 175, 176
PstI CTGCAG 1 cut(s) 778
PsuI RGATCY 2 cut(s) 97, 1030
PvuII CAGCTG 2 cut(s) 559, 963
RseI CAYNNNNRTG 3 cut(s) 588, 855, 1200
SaqAI TTAA 4 cut(s) 165, 639, 918, 924
SatI GCNGC 4 cut(s) 627, 630, 774, 870
Sau3AI GATC 4 cut(s) 97, 748, 1030, 1054
Sau96I GGNCC 3 cut(s) 74, 175, 176
SchI GAGTC 3 cut(s) 423, 724, 984
ScrFI CCNGG 3 cut(s) 150, 1128, 1217
SduI GDGCHC 4 cut(s) 179, 319, 551, 1230
SfaNI GCATC 6 cut(s) 101, 577, 856, 1006, 1135, 1407
SfcI CTRYAG 2 cut(s) 774, 1101
SfuI TTCGAA 1 cut(s) 892
SinI GGWCC 1 cut(s) 74
SmiMI CAYNNNNRTG 3 cut(s) 588, 855, 1200
SmlI CTYRAG 3 cut(s) 633, 834, 1352
SmoI CTYRAG 3 cut(s) 633, 834, 1352
SsiI CCGC 4 cut(s) 77, 218, 1285, 1412
SspI AATATT 1 cut(s) 1012
SspMI CTAG 2 cut(s) 183, 233
StyD4I CCNGG 3 cut(s) 148, 1126, 1215
StyI CCWWGG 2 cut(s) 335, 465
TaaI ACNGT 3 cut(s) 762, 816, 1102
TaiI ACGT 1 cut(s) 1176
TaqI TCGA 5 cut(s) 417, 535, 892, 1143, 1299
TfiI GAWTC 4 cut(s) 119, 473, 801, 1134
Tru1I TTAA 4 cut(s) 165, 639, 918, 924
Tru9I TTAA 4 cut(s) 165, 639, 918, 924
TscAI CASTG 3 cut(s) 819, 1030, 1105
TseFI GTSAC 5 cut(s) 302, 499, 655, 956, 965
TseI GCWGC 4 cut(s) 626, 629, 773, 869
Tsp45I GTSAC 5 cut(s) 302, 499, 655, 956, 965
TspDTI ATGAA 6 cut(s) 17, 23, 260, 388, 507, 1177
TspGWI ACGGA 2 cut(s) 278, 1171
TspRI CASTG 3 cut(s) 819, 1030, 1105
Van91I CCANNNNNTGG 1 cut(s) 1371
VneI GTGCAC 1 cut(s) 315
VpaK11BI GGWCC 1 cut(s) 74
XagI CCTNNNNNAGG 2 cut(s) 509, 606
XapI RAATTY 6 cut(s) 140, 153, 228, 531, 883, 914
XceI RCATGY 2 cut(s) 87, 583
XmnI GAANNNNTTC 1 cut(s) 352
XspI CTAG 2 cut(s) 183, 233
Zsp2I ATGCAT 2 cut(s) 585, 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.