pycom16g23510

Xylose isomerase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
24529266 .. 24533855
4590 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g23510.9

Sequence Viewer

Length: 1434 bp
ATGAAGGCTGGAAGGATTTTGTTGCTTCTTCTTTGTTTGAATGTGGTTACGTTTGGAGTGATTGCTGATTTGCCAACATGCCCTGCATCAGATCTTGGAAGTGGGTGTGGTGATTCTGATGAATGGGAAGGGGAATTTTTCCCCGGCATTCCCAAAATTAAGTATGAGGGCCCTTCTACCAAGAACCCCCTTGCATTCAAGTGGTATAATGCGGATGAGGAGATTCTTGGGAAAAAAATGAAGGATTGGATGAGGTTTAGTGTTGCATTTTGGCACACATTCCGTGGAACAGGAGGTGACCCATTTGGTGCACCTACAAAGAATTGGCCATGGGAGGATGGAACTAATTCTGTGGCTATGGCAAAGAGAAGAATGAGAGCCAACTTTGAGTTCATAAACAAGCTTGGAGTTGATAGGTGGTGTTTCCATGACAGGGATATCGCTCCTGATGGCAAAACCTTGGAGGAATCTAATAAAAACTTGGATGAAGTGGTGGCCCTTGCTAAAGACCTTCAGGGAACCAAAATTCGACCTTTATGGGGCACAGCTCAGCTGTTTTTGCATCCTCGTTACATGCATGGTGGTGCGACTAGCCCTGAAGTAGGTGTATATGCATATGCTGCTGCTCAAGTTAAGAAAGCCATTGAGGTTACACATTATTTAGGGGGCGAAAATTATGTTTTCTGGGGTGGCCGCGAAGGTTACCAGAGTCTCTTGAATACTGACATGGGAAGAGAGCTTGATCATCTGGCAAGGTTTCTTGAAGCTGCTGTTGCCTACAAGAAGAAAATCGGATACAATGGGACATTGTTGATTGAACCCAAGCCTCAAGAACCTACCAAACACCAGTATGACTGGGATGCTGCAACATCAGCAAACTTCCTGCGAAAATATGGCCTTATAGGAGAATTTAAGCTTAACATTGAGTGCAATCATGCAACACTATCTGGTCACAGCTGTTATCATGAGCTTGAAACTGCAAGACTCAATGGTCTACTTGGAAACGTTGATGCAAACACTGGAGATCCTCAGACTGGATGGGATACAGATCAGTTTCTCACGGATATTGCAGAGGCAACTCTGGTTATGCACAGTGTAGTAAAGAATGGAGGAATAGCACCTGGAGGATTCAACTTTGATGCCAAATTACGAAGAGAAAGCACAGATGTTGAGGATTTGTTCATTGCTCATATCGGCGGAATGGATACCCTCGCCCGTGGCCTCCGTAATGTTGCAAAGTTGGTTGAGGATGGTTCTCTACCTGACCTTGTTCGCAAACGATACAAGAGTTTCGATACTGAAATTGGGGCCCTTATAGAGGCTGGTAAGGCTGATTTTGAGTATCTTGAGAAGAAGGCAATAGAATGGGGTGAACCAACAGTTCCTTCTGCCAAGCAGGAACTTGCGGAGATGCTTTTCCAGTCGGTTTTGTAA

Protein Analysis

478

Amino Acids

53.08

Weight (kDa)

5.57

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 990
AccI GTMKAC 1 cut(s) 994
AccII CGCG 1 cut(s) 696
AciI CCGC 4 cut(s) 212, 694, 1197, 1406
AclI AACGTT 1 cut(s) 1005
AclWI GGATC 1 cut(s) 1019
AcoI YGGCCR 2 cut(s) 326, 691
AcsI RAATTY 3 cut(s) 134, 525, 908
AcuI CTGAAG 2 cut(s) 497, 618
AfiI CCNNNNNNNGG 5 cut(s) 433, 539, 602, 1034, 1318
AgsI TTSAA 7 cut(s) 40, 199, 718, 764, 818, 974, 1132
AjnI CCWGG 1 cut(s) 1120
AjuI GAANNNNNNNTTGG 4 cut(s) 374, 406, 1369, 1401
AluBI AGCT 8 cut(s) 403, 548, 553, 739, 767, 916, 957, 970
AluI AGCT 8 cut(s) 403, 548, 553, 739, 767, 916, 957, 970
Alw21I GWGCWC 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 716
Alw44I GTGCAC 1 cut(s) 309
AlwI GGATC 1 cut(s) 1019
AoxI GGCC 7 cut(s) 169, 326, 495, 691, 895, 1219, 1308
ApaI GGGCCC 2 cut(s) 173, 1312
ApaLI GTGCAC 1 cut(s) 309
ApeKI GCWGC 4 cut(s) 620, 623, 767, 863
ApoI RAATTY 3 cut(s) 134, 525, 908
Asp700I GAANNNNTTC 1 cut(s) 346
AspS9I GGNCC 5 cut(s) 169, 170, 496, 1308, 1309
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 3 cut(s) 122, 308, 1382
BaeGI GKGCMC 4 cut(s) 173, 313, 545, 1312
BaeI ACNNNNGTAYC 2 cut(s) 1273, 1306
BalI TGGCCA 1 cut(s) 328
BanII GRGCYC 2 cut(s) 173, 1312
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 4 cut(s) 607, 610, 754, 850
BccI CCATC 4 cut(s) 332, 443, 1032, 1244
BciT130I CCWGG 1 cut(s) 1122
BciVI GTATCC 3 cut(s) 788, 1036, 1198
BclI TGATCA 1 cut(s) 742
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 716
BfaI CTAG 1 cut(s) 591
BfuI GTATCC 3 cut(s) 788, 1036, 1198
BglII AGATCT 1 cut(s) 91
BisI GCNGC 5 cut(s) 621, 624, 694, 768, 864
BlpI GCTNAGC 1 cut(s) 549
BlsI GCNGC 5 cut(s) 622, 625, 695, 769, 865
Bme1390I CCNGG 2 cut(s) 144, 1122
BmgT120I GGNCC 5 cut(s) 169, 170, 496, 1308, 1309
BmiI GGNNCC 4 cut(s) 171, 520, 1309, 1310
BmrFI CCNGG 2 cut(s) 144, 1122
BmrI ACTGGG 1 cut(s) 865
BmsI GCATC 6 cut(s) 95, 571, 850, 1000, 1129, 1401
BmuI ACTGGG 1 cut(s) 865
BpmI CTGGAG 2 cut(s) 1041, 1143
Bpu1102I GCTNAGC 1 cut(s) 549
BpuEI CTTGAG 3 cut(s) 612, 813, 1367
BpuMI CCSGG 1 cut(s) 144
BsaBI GATNNNNATC 1 cut(s) 1047
BsaJI CCNNGG 5 cut(s) 142, 283, 329, 459, 1216
Bsc4I CCNNNNNNNGG 5 cut(s) 433, 539, 602, 1034, 1318
Bse1I ACTGG 5 cut(s) 847, 860, 1024, 1039, 1420
Bse3DI GCAATG 1 cut(s) 1182
Bse8I GATNNNNATC 1 cut(s) 1047
BseBI CCWGG 1 cut(s) 1122
BseDI CCNNGG 5 cut(s) 142, 283, 329, 459, 1216
BseGI GGATG 8 cut(s) 220, 255, 343, 490, 562, 865, 1043, 1255
BseJI GATNNNNATC 1 cut(s) 1047
BseLI CCNNNNNNNGG 5 cut(s) 433, 539, 602, 1034, 1318
BseMI GCAATG 1 cut(s) 1182
BseMII CTCAG 2 cut(s) 563, 1043
BseNI ACTGG 5 cut(s) 847, 860, 1024, 1039, 1420
BseRI GAGGAG 1 cut(s) 233
BseSI GKGCMC 4 cut(s) 173, 313, 545, 1312
BseXI GCAGC 4 cut(s) 607, 610, 754, 850
Bsh1236I CGCG 1 cut(s) 696
BshFI GGCC 7 cut(s) 171, 328, 497, 693, 897, 1221, 1310
BsiHKAI GWGCWC 1 cut(s) 313
BsiSI CCGG 1 cut(s) 144
BslFI GGGAC 1 cut(s) 817
BslI CCNNNNNNNGG 5 cut(s) 433, 539, 602, 1034, 1318
BsmAI GTCTC 1 cut(s) 716
BsmFI GGGAC 1 cut(s) 817
BsmI GAATGC 2 cut(s) 147, 194
BsnI GGCC 7 cut(s) 171, 328, 497, 693, 897, 1221, 1310
Bsp120I GGGCCC 2 cut(s) 169, 1308
Bsp1286I GDGCHC 4 cut(s) 173, 313, 545, 1312
Bsp143I GATC 4 cut(s) 91, 742, 1024, 1048
Bsp1720I GCTNAGC 1 cut(s) 549
Bsp19I CCATGG 1 cut(s) 329
BspACI CCGC 4 cut(s) 212, 694, 1197, 1406
BspANI GGCC 7 cut(s) 171, 328, 497, 693, 897, 1221, 1310
BspCNI CTCAG 2 cut(s) 562, 1042
BspFNI CGCG 1 cut(s) 696
BspHI TCATGA 1 cut(s) 964
BspLI GGNNCC 4 cut(s) 171, 520, 1309, 1310
BspPI GGATC 1 cut(s) 1019
BsrDI GCAATG 1 cut(s) 1182
BsrI ACTGG 5 cut(s) 847, 860, 1024, 1039, 1420
BssECI CCNNGG 5 cut(s) 142, 283, 329, 459, 1216
BssMI GATC 4 cut(s) 91, 742, 1024, 1048
BssT1I CCWWGG 2 cut(s) 329, 459
Bst2UI CCWGG 1 cut(s) 1122
Bst4CI ACNGT 2 cut(s) 1094, 1381
Bst6I CTCTTC 2 cut(s) 727, 1147
BstAPI GCANNNNNTGC 1 cut(s) 620
BstDEI CTNAG 2 cut(s) 549, 1029
BstDSI CCRYGG 3 cut(s) 283, 329, 1216
BstEII GGTNACC 2 cut(s) 296, 701
BstENI CCTNNNNNAGG 2 cut(s) 600, 1316
BstF5I GGATG 8 cut(s) 220, 255, 343, 490, 562, 865, 1043, 1255
BstFNI CGCG 1 cut(s) 696
BstKTI GATC 4 cut(s) 94, 745, 1027, 1051
BstMAI GTCTC 1 cut(s) 716
BstMBI GATC 4 cut(s) 91, 742, 1024, 1048
BstMWI GCNNNNNNNGC 5 cut(s) 559, 620, 773, 872, 1328
BstNI CCWGG 1 cut(s) 1122
BstNSI RCATGY 2 cut(s) 81, 577
BstPI GGTNACC 2 cut(s) 296, 701
BstSCI CCNGG 2 cut(s) 142, 1120
BstSLI GKGCMC 4 cut(s) 173, 313, 545, 1312
BstUI CGCG 1 cut(s) 696
BstV1I GCAGC 4 cut(s) 607, 610, 754, 850
BstX2I RGATCY 2 cut(s) 91, 1024
BstYI RGATCY 2 cut(s) 91, 1024
BsuI GTATCC 3 cut(s) 788, 1036, 1198
BsuRI GGCC 7 cut(s) 171, 328, 497, 693, 897, 1221, 1310
BtgI CCRYGG 3 cut(s) 283, 329, 1216
BtsCI GGATG 8 cut(s) 220, 255, 343, 490, 562, 865, 1043, 1255
BtsIMutI CAGTG 2 cut(s) 1017, 1099
CciI TCATGA 1 cut(s) 964
Cfr13I GGNCC 5 cut(s) 169, 170, 496, 1308, 1309
CviAII CATG 8 cut(s) 78, 330, 428, 574, 578, 727, 935, 965
DdeI CTNAG 2 cut(s) 549, 1029
DpnI GATC 4 cut(s) 93, 744, 1026, 1050
DpnII GATC 4 cut(s) 91, 742, 1024, 1048
DrdI GACNNNNNNGTC 1 cut(s) 990
DseDI GACNNNNNNGTC 1 cut(s) 990
EaeI YGGCCR 2 cut(s) 326, 691
Eam1104I CTCTTC 2 cut(s) 727, 1147
EarI CTCTTC 2 cut(s) 727, 1147
EciI GGCGGA 1 cut(s) 1212
Eco130I CCWWGG 2 cut(s) 329, 459
Eco24I GRGCYC 2 cut(s) 173, 1312
Eco32I GATATC 1 cut(s) 439
Eco57I CTGAAG 2 cut(s) 497, 618
Eco91I GGTNACC 2 cut(s) 296, 701
EcoNI CCTNNNNNAGG 2 cut(s) 600, 1316
EcoO109I RGGNCCY 4 cut(s) 169, 170, 1308, 1309
EcoO65I GGTNACC 2 cut(s) 296, 701
EcoRII CCWGG 1 cut(s) 1120
EcoRV GATATC 1 cut(s) 439
EcoT14I CCWWGG 2 cut(s) 329, 459
EcoT22I ATGCAT 2 cut(s) 579, 616
EcoT38I GRGCYC 2 cut(s) 173, 1312
ErhI CCWWGG 2 cut(s) 329, 459
FaeI CATG 8 cut(s) 81, 333, 431, 577, 581, 730, 938, 968
FaqI GGGAC 1 cut(s) 817
FatI CATG 8 cut(s) 77, 329, 427, 573, 577, 726, 934, 964
FauNDI CATATG 1 cut(s) 616
FbaI TGATCA 1 cut(s) 742
FblI GTMKAC 1 cut(s) 994
Fnu4HI GCNGC 5 cut(s) 621, 624, 694, 768, 864
FokI GGATG 8 cut(s) 227, 262, 350, 497, 549, 872, 1050, 1262
FriOI GRGCYC 2 cut(s) 173, 1312
Fsp4HI GCNGC 5 cut(s) 621, 624, 694, 768, 864
FspBI CTAG 1 cut(s) 591
GluI GCNGC 5 cut(s) 621, 624, 694, 768, 864
GsuI CTGGAG 2 cut(s) 1041, 1143
HaeIII GGCC 7 cut(s) 171, 328, 497, 693, 897, 1221, 1310
HapII CCGG 1 cut(s) 144
Hin1II CATG 8 cut(s) 81, 333, 431, 577, 581, 730, 938, 968
HindIII AAGCTT 2 cut(s) 401, 914
HinfI GANTC 6 cut(s) 113, 223, 467, 709, 984, 1128
HpaII CCGG 1 cut(s) 144
HphI GGTGA 3 cut(s) 122, 308, 1382
Hpy166II GTNNAC 3 cut(s) 311, 995, 1373
Hpy188I TCNGA 4 cut(s) 91, 118, 794, 1032
Hpy188III TCNNGA 6 cut(s) 446, 715, 761, 830, 965, 1346
Hpy8I GTNNAC 3 cut(s) 311, 995, 1373
HpyAV CCTTC 8 cut(s) 6, 122, 183, 235, 521, 692, 1348, 1395
HpyCH4III ACNGT 2 cut(s) 1094, 1381
HpyCH4IV ACGT 2 cut(s) 50, 1005
HpyF10VI GCNNNNNNNGC 5 cut(s) 559, 620, 773, 872, 1328
HpyF3I CTNAG 2 cut(s) 549, 1029
HpySE526I ACGT 2 cut(s) 50, 1005
Hsp92II CATG 8 cut(s) 81, 333, 431, 577, 581, 730, 938, 968
Ksp22I TGATCA 1 cut(s) 742
Kzo9I GATC 4 cut(s) 91, 742, 1024, 1048
LmnI GCTCC 1 cut(s) 448
Lsp1109I GCAGC 4 cut(s) 607, 610, 754, 850
LweI GCATC 6 cut(s) 95, 571, 850, 1000, 1129, 1401
MaeI CTAG 1 cut(s) 591
MaeII ACGT 2 cut(s) 50, 1005
MaeIII GTNAC 6 cut(s) 46, 296, 569, 649, 701, 950
MalI GATC 4 cut(s) 93, 744, 1026, 1050
MboI GATC 4 cut(s) 91, 742, 1024, 1048
MboII GAAGA 6 cut(s) 20, 381, 744, 796, 1164, 1363
MflI RGATCY 2 cut(s) 91, 1024
MhlI GDGCHC 4 cut(s) 173, 313, 545, 1312
MlsI TGGCCA 1 cut(s) 328
MluCI AATT 9 cut(s) 134, 156, 322, 346, 525, 673, 908, 1145, 1302
MluNI TGGCCA 1 cut(s) 328
MlyI GAGTC 2 cut(s) 718, 978
Mox20I TGGCCA 1 cut(s) 328
Mph1103I ATGCAT 2 cut(s) 579, 616
MroXI GAANNNNTTC 1 cut(s) 346
MscI TGGCCA 1 cut(s) 328
MseI TTAA 4 cut(s) 159, 633, 912, 918
MslI CAYNNNNRTG 3 cut(s) 199, 582, 849
Msp20I TGGCCA 1 cut(s) 328
MspA1I CMGCKG 2 cut(s) 553, 957
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 2 cut(s) 144, 1122
Mva1269I GAATGC 2 cut(s) 147, 194
MvaI CCWGG 1 cut(s) 1122
MvnI CGCG 1 cut(s) 696
MwoI GCNNNNNNNGC 5 cut(s) 559, 620, 773, 872, 1328
NciI CCSGG 1 cut(s) 144
NcoI CCATGG 1 cut(s) 329
NdeI CATATG 1 cut(s) 616
NdeII GATC 4 cut(s) 91, 742, 1024, 1048
NlaIII CATG 8 cut(s) 81, 333, 431, 577, 581, 730, 938, 968
NlaIV GGNNCC 4 cut(s) 171, 520, 1309, 1310
NmuCI GTSAC 2 cut(s) 296, 950
NsiI ATGCAT 2 cut(s) 579, 616
NspI RCATGY 2 cut(s) 81, 577
PagI TCATGA 1 cut(s) 964
PctI GAATGC 2 cut(s) 147, 194
PdmI GAANNNNTTC 1 cut(s) 346
PfeI GAWTC 4 cut(s) 113, 223, 467, 1128
PkrI GCNGC 5 cut(s) 622, 625, 695, 769, 865
PleI GAGTC 2 cut(s) 717, 978
PpsI GAGTC 2 cut(s) 717, 978
Psp1406I AACGTT 1 cut(s) 1005
Psp6I CCWGG 1 cut(s) 1120
PspEI GGTNACC 2 cut(s) 296, 701
PspGI CCWGG 1 cut(s) 1120
PspN4I GGNNCC 4 cut(s) 171, 520, 1309, 1310
PspOMI GGGCCC 2 cut(s) 169, 1308
PspPI GGNCC 5 cut(s) 169, 170, 496, 1308, 1309
PsuI RGATCY 2 cut(s) 91, 1024
PvuII CAGCTG 2 cut(s) 553, 957
RseI CAYNNNNRTG 3 cut(s) 199, 582, 849
SaqAI TTAA 4 cut(s) 159, 633, 912, 918
SatI GCNGC 5 cut(s) 621, 624, 694, 768, 864
Sau3AI GATC 4 cut(s) 91, 742, 1024, 1048
Sau96I GGNCC 5 cut(s) 169, 170, 496, 1308, 1309
SchI GAGTC 2 cut(s) 718, 978
ScrFI CCNGG 2 cut(s) 144, 1122
SduI GDGCHC 4 cut(s) 173, 313, 545, 1312
SfaNI GCATC 6 cut(s) 95, 571, 850, 1000, 1129, 1401
SmiMI CAYNNNNRTG 3 cut(s) 199, 582, 849
SmlI CTYRAG 3 cut(s) 627, 828, 1346
SmoI CTYRAG 3 cut(s) 627, 828, 1346
Sse9I AATT 9 cut(s) 134, 156, 322, 346, 525, 673, 908, 1145, 1302
SsiI CCGC 4 cut(s) 212, 694, 1197, 1406
SspMI CTAG 1 cut(s) 591
StyD4I CCNGG 2 cut(s) 142, 1120
StyI CCWWGG 2 cut(s) 329, 459
TaaI ACNGT 2 cut(s) 1094, 1381
TaiI ACGT 2 cut(s) 53, 1008
TaqI TCGA 2 cut(s) 529, 1293
TasI AATT 9 cut(s) 134, 156, 322, 346, 525, 673, 908, 1145, 1302
TauI GCSGC 1 cut(s) 696
TfiI GAWTC 4 cut(s) 113, 223, 467, 1128
Tru1I TTAA 4 cut(s) 159, 633, 912, 918
Tru9I TTAA 4 cut(s) 159, 633, 912, 918
TscAI CASTG 2 cut(s) 1024, 1099
TseFI GTSAC 2 cut(s) 296, 950
TseI GCWGC 4 cut(s) 620, 623, 767, 863
Tsp45I GTSAC 2 cut(s) 296, 950
TspDTI ATGAA 6 cut(s) 17, 135, 254, 382, 501, 1171
TspGWI ACGGA 3 cut(s) 272, 1076, 1214
TspRI CASTG 2 cut(s) 1024, 1099
VneI GTGCAC 1 cut(s) 309
XagI CCTNNNNNAGG 2 cut(s) 600, 1316
XapI RAATTY 3 cut(s) 134, 525, 908
XceI RCATGY 2 cut(s) 81, 577
XmiI GTMKAC 1 cut(s) 994
XmnI GAANNNNTTC 1 cut(s) 346
XspI CTAG 1 cut(s) 591
Zsp2I ATGCAT 2 cut(s) 579, 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.