Xylose isomerase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G57655 AT5G57655 |
| fragaria_vesca | FvH4_4g32520 FvH4_4g32520 FvH4_4g32520 |
| malus_domestica | MD13G1265000.v1.1 MD16G1265900.v1.1 |
| prunus_persica | Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1 |
| pyrus_communis | pycom13g23640 pycom16g23510 |
| rosa_chinensis | RchiOBHm_Chr4g0403601 RchiOBHm_Chr5g0036521 RchiOBHm_Chr5g0046871 |
| rosa_laevigata | RLG00000008967 |
| rosa_multiflora | Rmu_co8193382.1_g000001 Rmu_sc0006376.1_g000016 Rmu_sc0007038.1_g000004 |
| rosa_roxburghii | Rroxscaffold_5G00348230 |
| rosa_rugosa | Rorug04G0044500 Rorug04G0044600 Rorug04G0044600 |
| rosa_samantha | Rh4AG119600 Rh4AG148500 Rh4BG112800 Rh4BG186000 Rh4CG026500 Rh4CG127600 Rh4DG112300 Rh5BG320700 Rh5CG483800 Rh5DG258300 Rh5DG331400 Rh6AG078400 |
| rosa_wichuraiana | Rw4G009720 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 990 |
| AccI | GTMKAC | 1 cut(s) | 994 |
| AccII | CGCG | 1 cut(s) | 696 |
| AciI | CCGC | 4 cut(s) | 212, 694, 1197, 1406 |
| AclI | AACGTT | 1 cut(s) | 1005 |
| AclWI | GGATC | 1 cut(s) | 1019 |
| AcoI | YGGCCR | 2 cut(s) | 326, 691 |
| AcsI | RAATTY | 3 cut(s) | 134, 525, 908 |
| AcuI | CTGAAG | 2 cut(s) | 497, 618 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 433, 539, 602, 1034, 1318 |
| AgsI | TTSAA | 7 cut(s) | 40, 199, 718, 764, 818, 974, 1132 |
| AjnI | CCWGG | 1 cut(s) | 1120 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 374, 406, 1369, 1401 |
| AluBI | AGCT | 8 cut(s) | 403, 548, 553, 739, 767, 916, 957, 970 |
| AluI | AGCT | 8 cut(s) | 403, 548, 553, 739, 767, 916, 957, 970 |
| Alw21I | GWGCWC | 1 cut(s) | 313 |
| Alw26I | GTCTC | 1 cut(s) | 716 |
| Alw44I | GTGCAC | 1 cut(s) | 309 |
| AlwI | GGATC | 1 cut(s) | 1019 |
| AoxI | GGCC | 7 cut(s) | 169, 326, 495, 691, 895, 1219, 1308 |
| ApaI | GGGCCC | 2 cut(s) | 173, 1312 |
| ApaLI | GTGCAC | 1 cut(s) | 309 |
| ApeKI | GCWGC | 4 cut(s) | 620, 623, 767, 863 |
| ApoI | RAATTY | 3 cut(s) | 134, 525, 908 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 346 |
| AspS9I | GGNCC | 5 cut(s) | 169, 170, 496, 1308, 1309 |
| AsuC2I | CCSGG | 1 cut(s) | 144 |
| AsuHPI | GGTGA | 3 cut(s) | 122, 308, 1382 |
| BaeGI | GKGCMC | 4 cut(s) | 173, 313, 545, 1312 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1273, 1306 |
| BalI | TGGCCA | 1 cut(s) | 328 |
| BanII | GRGCYC | 2 cut(s) | 173, 1312 |
| Bbv12I | GWGCWC | 1 cut(s) | 313 |
| BbvI | GCAGC | 4 cut(s) | 607, 610, 754, 850 |
| BccI | CCATC | 4 cut(s) | 332, 443, 1032, 1244 |
| BciT130I | CCWGG | 1 cut(s) | 1122 |
| BciVI | GTATCC | 3 cut(s) | 788, 1036, 1198 |
| BclI | TGATCA | 1 cut(s) | 742 |
| BcnI | CCSGG | 1 cut(s) | 144 |
| BcoDI | GTCTC | 1 cut(s) | 716 |
| BfaI | CTAG | 1 cut(s) | 591 |
| BfuI | GTATCC | 3 cut(s) | 788, 1036, 1198 |
| BglII | AGATCT | 1 cut(s) | 91 |
| BisI | GCNGC | 5 cut(s) | 621, 624, 694, 768, 864 |
| BlpI | GCTNAGC | 1 cut(s) | 549 |
| BlsI | GCNGC | 5 cut(s) | 622, 625, 695, 769, 865 |
| Bme1390I | CCNGG | 2 cut(s) | 144, 1122 |
| BmgT120I | GGNCC | 5 cut(s) | 169, 170, 496, 1308, 1309 |
| BmiI | GGNNCC | 4 cut(s) | 171, 520, 1309, 1310 |
| BmrFI | CCNGG | 2 cut(s) | 144, 1122 |
| BmrI | ACTGGG | 1 cut(s) | 865 |
| BmsI | GCATC | 6 cut(s) | 95, 571, 850, 1000, 1129, 1401 |
| BmuI | ACTGGG | 1 cut(s) | 865 |
| BpmI | CTGGAG | 2 cut(s) | 1041, 1143 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 549 |
| BpuEI | CTTGAG | 3 cut(s) | 612, 813, 1367 |
| BpuMI | CCSGG | 1 cut(s) | 144 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1047 |
| BsaJI | CCNNGG | 5 cut(s) | 142, 283, 329, 459, 1216 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 433, 539, 602, 1034, 1318 |
| Bse1I | ACTGG | 5 cut(s) | 847, 860, 1024, 1039, 1420 |
| Bse3DI | GCAATG | 1 cut(s) | 1182 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1047 |
| BseBI | CCWGG | 1 cut(s) | 1122 |
| BseDI | CCNNGG | 5 cut(s) | 142, 283, 329, 459, 1216 |
| BseGI | GGATG | 8 cut(s) | 220, 255, 343, 490, 562, 865, 1043, 1255 |
| BseJI | GATNNNNATC | 1 cut(s) | 1047 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 433, 539, 602, 1034, 1318 |
| BseMI | GCAATG | 1 cut(s) | 1182 |
| BseMII | CTCAG | 2 cut(s) | 563, 1043 |
| BseNI | ACTGG | 5 cut(s) | 847, 860, 1024, 1039, 1420 |
| BseRI | GAGGAG | 1 cut(s) | 233 |
| BseSI | GKGCMC | 4 cut(s) | 173, 313, 545, 1312 |
| BseXI | GCAGC | 4 cut(s) | 607, 610, 754, 850 |
| Bsh1236I | CGCG | 1 cut(s) | 696 |
| BshFI | GGCC | 7 cut(s) | 171, 328, 497, 693, 897, 1221, 1310 |
| BsiHKAI | GWGCWC | 1 cut(s) | 313 |
| BsiSI | CCGG | 1 cut(s) | 144 |
| BslFI | GGGAC | 1 cut(s) | 817 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 433, 539, 602, 1034, 1318 |
| BsmAI | GTCTC | 1 cut(s) | 716 |
| BsmFI | GGGAC | 1 cut(s) | 817 |
| BsmI | GAATGC | 2 cut(s) | 147, 194 |
| BsnI | GGCC | 7 cut(s) | 171, 328, 497, 693, 897, 1221, 1310 |
| Bsp120I | GGGCCC | 2 cut(s) | 169, 1308 |
| Bsp1286I | GDGCHC | 4 cut(s) | 173, 313, 545, 1312 |
| Bsp143I | GATC | 4 cut(s) | 91, 742, 1024, 1048 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 549 |
| Bsp19I | CCATGG | 1 cut(s) | 329 |
| BspACI | CCGC | 4 cut(s) | 212, 694, 1197, 1406 |
| BspANI | GGCC | 7 cut(s) | 171, 328, 497, 693, 897, 1221, 1310 |
| BspCNI | CTCAG | 2 cut(s) | 562, 1042 |
| BspFNI | CGCG | 1 cut(s) | 696 |
| BspHI | TCATGA | 1 cut(s) | 964 |
| BspLI | GGNNCC | 4 cut(s) | 171, 520, 1309, 1310 |
| BspPI | GGATC | 1 cut(s) | 1019 |
| BsrDI | GCAATG | 1 cut(s) | 1182 |
| BsrI | ACTGG | 5 cut(s) | 847, 860, 1024, 1039, 1420 |
| BssECI | CCNNGG | 5 cut(s) | 142, 283, 329, 459, 1216 |
| BssMI | GATC | 4 cut(s) | 91, 742, 1024, 1048 |
| BssT1I | CCWWGG | 2 cut(s) | 329, 459 |
| Bst2UI | CCWGG | 1 cut(s) | 1122 |
| Bst4CI | ACNGT | 2 cut(s) | 1094, 1381 |
| Bst6I | CTCTTC | 2 cut(s) | 727, 1147 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 620 |
| BstDEI | CTNAG | 2 cut(s) | 549, 1029 |
| BstDSI | CCRYGG | 3 cut(s) | 283, 329, 1216 |
| BstEII | GGTNACC | 2 cut(s) | 296, 701 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 600, 1316 |
| BstF5I | GGATG | 8 cut(s) | 220, 255, 343, 490, 562, 865, 1043, 1255 |
| BstFNI | CGCG | 1 cut(s) | 696 |
| BstKTI | GATC | 4 cut(s) | 94, 745, 1027, 1051 |
| BstMAI | GTCTC | 1 cut(s) | 716 |
| BstMBI | GATC | 4 cut(s) | 91, 742, 1024, 1048 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 559, 620, 773, 872, 1328 |
| BstNI | CCWGG | 1 cut(s) | 1122 |
| BstNSI | RCATGY | 2 cut(s) | 81, 577 |
| BstPI | GGTNACC | 2 cut(s) | 296, 701 |
| BstSCI | CCNGG | 2 cut(s) | 142, 1120 |
| BstSLI | GKGCMC | 4 cut(s) | 173, 313, 545, 1312 |
| BstUI | CGCG | 1 cut(s) | 696 |
| BstV1I | GCAGC | 4 cut(s) | 607, 610, 754, 850 |
| BstX2I | RGATCY | 2 cut(s) | 91, 1024 |
| BstYI | RGATCY | 2 cut(s) | 91, 1024 |
| BsuI | GTATCC | 3 cut(s) | 788, 1036, 1198 |
| BsuRI | GGCC | 7 cut(s) | 171, 328, 497, 693, 897, 1221, 1310 |
| BtgI | CCRYGG | 3 cut(s) | 283, 329, 1216 |
| BtsCI | GGATG | 8 cut(s) | 220, 255, 343, 490, 562, 865, 1043, 1255 |
| BtsIMutI | CAGTG | 2 cut(s) | 1017, 1099 |
| CciI | TCATGA | 1 cut(s) | 964 |
| Cfr13I | GGNCC | 5 cut(s) | 169, 170, 496, 1308, 1309 |
| CviAII | CATG | 8 cut(s) | 78, 330, 428, 574, 578, 727, 935, 965 |
| DdeI | CTNAG | 2 cut(s) | 549, 1029 |
| DpnI | GATC | 4 cut(s) | 93, 744, 1026, 1050 |
| DpnII | GATC | 4 cut(s) | 91, 742, 1024, 1048 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 990 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 990 |
| EaeI | YGGCCR | 2 cut(s) | 326, 691 |
| Eam1104I | CTCTTC | 2 cut(s) | 727, 1147 |
| EarI | CTCTTC | 2 cut(s) | 727, 1147 |
| EciI | GGCGGA | 1 cut(s) | 1212 |
| Eco130I | CCWWGG | 2 cut(s) | 329, 459 |
| Eco24I | GRGCYC | 2 cut(s) | 173, 1312 |
| Eco32I | GATATC | 1 cut(s) | 439 |
| Eco57I | CTGAAG | 2 cut(s) | 497, 618 |
| Eco91I | GGTNACC | 2 cut(s) | 296, 701 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 600, 1316 |
| EcoO109I | RGGNCCY | 4 cut(s) | 169, 170, 1308, 1309 |
| EcoO65I | GGTNACC | 2 cut(s) | 296, 701 |
| EcoRII | CCWGG | 1 cut(s) | 1120 |
| EcoRV | GATATC | 1 cut(s) | 439 |
| EcoT14I | CCWWGG | 2 cut(s) | 329, 459 |
| EcoT22I | ATGCAT | 2 cut(s) | 579, 616 |
| EcoT38I | GRGCYC | 2 cut(s) | 173, 1312 |
| ErhI | CCWWGG | 2 cut(s) | 329, 459 |
| FaeI | CATG | 8 cut(s) | 81, 333, 431, 577, 581, 730, 938, 968 |
| FaqI | GGGAC | 1 cut(s) | 817 |
| FatI | CATG | 8 cut(s) | 77, 329, 427, 573, 577, 726, 934, 964 |
| FauNDI | CATATG | 1 cut(s) | 616 |
| FbaI | TGATCA | 1 cut(s) | 742 |
| FblI | GTMKAC | 1 cut(s) | 994 |
| Fnu4HI | GCNGC | 5 cut(s) | 621, 624, 694, 768, 864 |
| FokI | GGATG | 8 cut(s) | 227, 262, 350, 497, 549, 872, 1050, 1262 |
| FriOI | GRGCYC | 2 cut(s) | 173, 1312 |
| Fsp4HI | GCNGC | 5 cut(s) | 621, 624, 694, 768, 864 |
| FspBI | CTAG | 1 cut(s) | 591 |
| GluI | GCNGC | 5 cut(s) | 621, 624, 694, 768, 864 |
| GsuI | CTGGAG | 2 cut(s) | 1041, 1143 |
| HaeIII | GGCC | 7 cut(s) | 171, 328, 497, 693, 897, 1221, 1310 |
| HapII | CCGG | 1 cut(s) | 144 |
| Hin1II | CATG | 8 cut(s) | 81, 333, 431, 577, 581, 730, 938, 968 |
| HindIII | AAGCTT | 2 cut(s) | 401, 914 |
| HinfI | GANTC | 6 cut(s) | 113, 223, 467, 709, 984, 1128 |
| HpaII | CCGG | 1 cut(s) | 144 |
| HphI | GGTGA | 3 cut(s) | 122, 308, 1382 |
| Hpy166II | GTNNAC | 3 cut(s) | 311, 995, 1373 |
| Hpy188I | TCNGA | 4 cut(s) | 91, 118, 794, 1032 |
| Hpy188III | TCNNGA | 6 cut(s) | 446, 715, 761, 830, 965, 1346 |
| Hpy8I | GTNNAC | 3 cut(s) | 311, 995, 1373 |
| HpyAV | CCTTC | 8 cut(s) | 6, 122, 183, 235, 521, 692, 1348, 1395 |
| HpyCH4III | ACNGT | 2 cut(s) | 1094, 1381 |
| HpyCH4IV | ACGT | 2 cut(s) | 50, 1005 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 559, 620, 773, 872, 1328 |
| HpyF3I | CTNAG | 2 cut(s) | 549, 1029 |
| HpySE526I | ACGT | 2 cut(s) | 50, 1005 |
| Hsp92II | CATG | 8 cut(s) | 81, 333, 431, 577, 581, 730, 938, 968 |
| Ksp22I | TGATCA | 1 cut(s) | 742 |
| Kzo9I | GATC | 4 cut(s) | 91, 742, 1024, 1048 |
| LmnI | GCTCC | 1 cut(s) | 448 |
| Lsp1109I | GCAGC | 4 cut(s) | 607, 610, 754, 850 |
| LweI | GCATC | 6 cut(s) | 95, 571, 850, 1000, 1129, 1401 |
| MaeI | CTAG | 1 cut(s) | 591 |
| MaeII | ACGT | 2 cut(s) | 50, 1005 |
| MaeIII | GTNAC | 6 cut(s) | 46, 296, 569, 649, 701, 950 |
| MalI | GATC | 4 cut(s) | 93, 744, 1026, 1050 |
| MboI | GATC | 4 cut(s) | 91, 742, 1024, 1048 |
| MboII | GAAGA | 6 cut(s) | 20, 381, 744, 796, 1164, 1363 |
| MflI | RGATCY | 2 cut(s) | 91, 1024 |
| MhlI | GDGCHC | 4 cut(s) | 173, 313, 545, 1312 |
| MlsI | TGGCCA | 1 cut(s) | 328 |
| MluCI | AATT | 9 cut(s) | 134, 156, 322, 346, 525, 673, 908, 1145, 1302 |
| MluNI | TGGCCA | 1 cut(s) | 328 |
| MlyI | GAGTC | 2 cut(s) | 718, 978 |
| Mox20I | TGGCCA | 1 cut(s) | 328 |
| Mph1103I | ATGCAT | 2 cut(s) | 579, 616 |
| MroXI | GAANNNNTTC | 1 cut(s) | 346 |
| MscI | TGGCCA | 1 cut(s) | 328 |
| MseI | TTAA | 4 cut(s) | 159, 633, 912, 918 |
| MslI | CAYNNNNRTG | 3 cut(s) | 199, 582, 849 |
| Msp20I | TGGCCA | 1 cut(s) | 328 |
| MspA1I | CMGCKG | 2 cut(s) | 553, 957 |
| MspI | CCGG | 1 cut(s) | 144 |
| MspR9I | CCNGG | 2 cut(s) | 144, 1122 |
| Mva1269I | GAATGC | 2 cut(s) | 147, 194 |
| MvaI | CCWGG | 1 cut(s) | 1122 |
| MvnI | CGCG | 1 cut(s) | 696 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 559, 620, 773, 872, 1328 |
| NciI | CCSGG | 1 cut(s) | 144 |
| NcoI | CCATGG | 1 cut(s) | 329 |
| NdeI | CATATG | 1 cut(s) | 616 |
| NdeII | GATC | 4 cut(s) | 91, 742, 1024, 1048 |
| NlaIII | CATG | 8 cut(s) | 81, 333, 431, 577, 581, 730, 938, 968 |
| NlaIV | GGNNCC | 4 cut(s) | 171, 520, 1309, 1310 |
| NmuCI | GTSAC | 2 cut(s) | 296, 950 |
| NsiI | ATGCAT | 2 cut(s) | 579, 616 |
| NspI | RCATGY | 2 cut(s) | 81, 577 |
| PagI | TCATGA | 1 cut(s) | 964 |
| PctI | GAATGC | 2 cut(s) | 147, 194 |
| PdmI | GAANNNNTTC | 1 cut(s) | 346 |
| PfeI | GAWTC | 4 cut(s) | 113, 223, 467, 1128 |
| PkrI | GCNGC | 5 cut(s) | 622, 625, 695, 769, 865 |
| PleI | GAGTC | 2 cut(s) | 717, 978 |
| PpsI | GAGTC | 2 cut(s) | 717, 978 |
| Psp1406I | AACGTT | 1 cut(s) | 1005 |
| Psp6I | CCWGG | 1 cut(s) | 1120 |
| PspEI | GGTNACC | 2 cut(s) | 296, 701 |
| PspGI | CCWGG | 1 cut(s) | 1120 |
| PspN4I | GGNNCC | 4 cut(s) | 171, 520, 1309, 1310 |
| PspOMI | GGGCCC | 2 cut(s) | 169, 1308 |
| PspPI | GGNCC | 5 cut(s) | 169, 170, 496, 1308, 1309 |
| PsuI | RGATCY | 2 cut(s) | 91, 1024 |
| PvuII | CAGCTG | 2 cut(s) | 553, 957 |
| RseI | CAYNNNNRTG | 3 cut(s) | 199, 582, 849 |
| SaqAI | TTAA | 4 cut(s) | 159, 633, 912, 918 |
| SatI | GCNGC | 5 cut(s) | 621, 624, 694, 768, 864 |
| Sau3AI | GATC | 4 cut(s) | 91, 742, 1024, 1048 |
| Sau96I | GGNCC | 5 cut(s) | 169, 170, 496, 1308, 1309 |
| SchI | GAGTC | 2 cut(s) | 718, 978 |
| ScrFI | CCNGG | 2 cut(s) | 144, 1122 |
| SduI | GDGCHC | 4 cut(s) | 173, 313, 545, 1312 |
| SfaNI | GCATC | 6 cut(s) | 95, 571, 850, 1000, 1129, 1401 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 199, 582, 849 |
| SmlI | CTYRAG | 3 cut(s) | 627, 828, 1346 |
| SmoI | CTYRAG | 3 cut(s) | 627, 828, 1346 |
| Sse9I | AATT | 9 cut(s) | 134, 156, 322, 346, 525, 673, 908, 1145, 1302 |
| SsiI | CCGC | 4 cut(s) | 212, 694, 1197, 1406 |
| SspMI | CTAG | 1 cut(s) | 591 |
| StyD4I | CCNGG | 2 cut(s) | 142, 1120 |
| StyI | CCWWGG | 2 cut(s) | 329, 459 |
| TaaI | ACNGT | 2 cut(s) | 1094, 1381 |
| TaiI | ACGT | 2 cut(s) | 53, 1008 |
| TaqI | TCGA | 2 cut(s) | 529, 1293 |
| TasI | AATT | 9 cut(s) | 134, 156, 322, 346, 525, 673, 908, 1145, 1302 |
| TauI | GCSGC | 1 cut(s) | 696 |
| TfiI | GAWTC | 4 cut(s) | 113, 223, 467, 1128 |
| Tru1I | TTAA | 4 cut(s) | 159, 633, 912, 918 |
| Tru9I | TTAA | 4 cut(s) | 159, 633, 912, 918 |
| TscAI | CASTG | 2 cut(s) | 1024, 1099 |
| TseFI | GTSAC | 2 cut(s) | 296, 950 |
| TseI | GCWGC | 4 cut(s) | 620, 623, 767, 863 |
| Tsp45I | GTSAC | 2 cut(s) | 296, 950 |
| TspDTI | ATGAA | 6 cut(s) | 17, 135, 254, 382, 501, 1171 |
| TspGWI | ACGGA | 3 cut(s) | 272, 1076, 1214 |
| TspRI | CASTG | 2 cut(s) | 1024, 1099 |
| VneI | GTGCAC | 1 cut(s) | 309 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 600, 1316 |
| XapI | RAATTY | 3 cut(s) | 134, 525, 908 |
| XceI | RCATGY | 2 cut(s) | 81, 577 |
| XmiI | GTMKAC | 1 cut(s) | 994 |
| XmnI | GAANNNNTTC | 1 cut(s) | 346 |
| XspI | CTAG | 1 cut(s) | 591 |
| Zsp2I | ATGCAT | 2 cut(s) | 579, 616 |