Rorug04G0044600

Xylose isomerase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
6874445 .. 6969824
95380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0044600.1

Sequence Viewer

Length: 1011 bp
ATGGTCTCCGGGAATTCAATCTACCCAGACCGTCTCCAACAGCTGAAGGCCTTCGACGAATCCAAAGCTGGGGTCAAAGGAATCGTCGATGCCGGAATCACCAAAGTCCCACCAATTTTCGTTTGGCCGCAGAAAGACGACAAGATCTACGGCCGACCAACCCAAGCTCATTTCACTATCCCAGTCGTCGACCTCGCTGACAATGCCGGCAGTCATGCTGAGGTGGTCGACGGAGTCCGAAGGGCCGCAGAGAGTGTTGGATTCTTTCAGGTGATGAACCATGGGATACCCAAGAGAGTGTTGGACGAGATGTTGGCGGCGGTGCGTGAGTTTCACGAGCTGCCGAGGGAGGTAAAGGCCGAGTATTACAGCAGGGATCCGATGAGGAAAGTTAAGTTCTTTAGTAGCTTTAATCTGTTCGAGTTAGCTAATTGGAGAGACAGTTTGTATGTTGACATGGCTCCAGAGCCTCTTGATCCTCAAGAACTGCCTATGGTTTGCAGAGATATAACTATGGAGTACTCTCAACATGTTTTCAAACTGAGTGTGACTTTGTTTGAATTGCTATCCGAGGCGCTTAAGCTCAAACTTGACCACCTTATAAACTTGGATTGTGCGAAGGGGCATTCATTGCTTAGCCACTACTATCCACCATGCCCTGAGCCTGAACTCACCATGGGCACCGGCAAACATTTTGATGCTGCTTTTCTCACCATCCTACTTCAGGACCACATCGGTGGACTCCAAATTCAATACCAAAACAAATGGATTGATGTTCCTCCTATGCCTGAAGCTCTAGTGGTGAACGTTGGGGATTTCTTGCAGCTTCTATCAAATGACAGATTCAAGAGTGTAGAGCACAGGGTACTGGCAAACCTTAAAGGTCCAAGAGTATCAGTTGCGAGCTTTTTCAGCACAGGAATGCTGCCATTGACCAAGCTCTATGGACCCATCAAGGAGTTATTATCAGAAGATAATCCTCCAAAGTACAGGCTAGGGAGACCACTGTGA

Protein Analysis

336

Amino Acids

37.99

Weight (kDa)

6.13

Isoelectric Point (pI)

27.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 60 - 160 3.5e-20 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 209 - 305 1.7e-34 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 602
AccB1I GGYRCC 1 cut(s) 680
AccI GTMKAC 2 cut(s) 189, 228
AciI CCGC 4 cut(s) 128, 246, 317, 320
AclI AACGTT 1 cut(s) 807
AclWI GGATC 3 cut(s) 371, 384, 470
AcoI YGGCCR 2 cut(s) 125, 151
AcsI RAATTY 2 cut(s) 13, 747
AcuI CTGAAG 3 cut(s) 65, 707, 810
AfaI GTAC 3 cut(s) 521, 867, 989
AfiI CCNNNNNNNGG 2 cut(s) 69, 724
AflII CTTAAG 1 cut(s) 578
AflIII ACRYGT 1 cut(s) 529
AgsI TTSAA 5 cut(s) 18, 538, 560, 752, 847
AleI CACNNNNGTG 1 cut(s) 735
Alw21I GWGCWC 1 cut(s) 861
Alw26I GTCTC 4 cut(s) 10, 38, 432, 994
AlwI GGATC 3 cut(s) 371, 384, 470
AoxI GGCC 5 cut(s) 48, 125, 151, 243, 357
ApeKI GCWGC 4 cut(s) 340, 701, 823, 925
ApoI RAATTY 2 cut(s) 13, 747
ArsI GACNNNNNNTTYG 4 cut(s) 57, 69, 89, 101
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 577
AspS9I GGNCC 4 cut(s) 243, 727, 884, 947
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 5 cut(s) 91, 283, 664, 703, 814
AvaII GGWCC 3 cut(s) 727, 884, 947
BaeGI GKGCMC 1 cut(s) 683
BamHI GGATCC 1 cut(s) 376
BanI GGYRCC 1 cut(s) 680
BauI CACGAG 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 861
BbvCI CCTCAGC 1 cut(s) 219
BbvI GCAGC 4 cut(s) 327, 688, 835, 912
BccI CCATC 2 cut(s) 722, 959
BceAI ACGGC 1 cut(s) 166
BciVI GTATCC 1 cut(s) 279
BcnI CCSGG 1 cut(s) 10
BcoDI GTCTC 4 cut(s) 10, 38, 432, 994
BfaI CTAG 2 cut(s) 797, 995
BfoI RGCGCY 1 cut(s) 578
BfrI CTTAAG 1 cut(s) 578
BfuI GTATCC 1 cut(s) 279
BglII AGATCT 1 cut(s) 144
BisI GCNGC 7 cut(s) 128, 246, 318, 341, 702, 824, 926
BlpI GCTNAGC 1 cut(s) 635
BlsI GCNGC 7 cut(s) 129, 247, 319, 342, 703, 825, 927
BmcAI AGTACT 1 cut(s) 521
Bme1390I CCNGG 1 cut(s) 10
Bme18I GGWCC 3 cut(s) 727, 884, 947
BmgT120I GGNCC 4 cut(s) 243, 727, 884, 947
BmiI GGNNCC 4 cut(s) 378, 462, 682, 949
BmrFI CCNGG 1 cut(s) 10
BmrI ACTGGG 1 cut(s) 176
BmsI GCATC 2 cut(s) 79, 688
BmuI ACTGGG 1 cut(s) 176
BpmI CTGGAG 1 cut(s) 447
Bpu10I CCTNAGC 2 cut(s) 219, 660
Bpu1102I GCTNAGC 1 cut(s) 635
BpuEI CTTGAG 1 cut(s) 465
BpuMI CCSGG 1 cut(s) 10
BsaI GGTCTC 2 cut(s) 10, 994
BsaJI CCNNGG 4 cut(s) 280, 344, 570, 675
BsaXI ACNNNNNCTCC 2 cut(s) 427, 457
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 724
Bse118I RCCGGY 2 cut(s) 206, 683
Bse1I ACTGG 2 cut(s) 182, 873
Bse3DI GCAATG 1 cut(s) 629
BseDI CCNNGG 4 cut(s) 280, 344, 570, 675
BseGI GGATG 1 cut(s) 714
BseLI CCNNNNNNNGG 2 cut(s) 69, 724
BseMI GCAATG 1 cut(s) 629
BseMII CTCAG 3 cut(s) 210, 533, 651
BseNI ACTGG 2 cut(s) 182, 873
BseSI GKGCMC 1 cut(s) 683
BseX3I CGGCCG 1 cut(s) 151
BseXI GCAGC 4 cut(s) 327, 688, 835, 912
BseYI CCCAGC 1 cut(s) 68
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 5 cut(s) 50, 127, 153, 245, 359
BshNI GGYRCC 1 cut(s) 680
BsiEI CGRYCG 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 861
BsiSI CCGG 4 cut(s) 9, 93, 207, 684
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 2 cut(s) 69, 724
BsmAI GTCTC 4 cut(s) 10, 38, 432, 994
BsmBI CGTCTC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 92
BsmI GAATGC 2 cut(s) 625, 927
BsnI GGCC 5 cut(s) 50, 127, 153, 245, 359
Bso31I GGTCTC 2 cut(s) 10, 994
Bsp1286I GDGCHC 2 cut(s) 683, 861
Bsp143I GATC 3 cut(s) 144, 376, 475
Bsp1720I GCTNAGC 1 cut(s) 635
Bsp19I CCATGG 2 cut(s) 280, 675
BspACI CCGC 4 cut(s) 128, 246, 317, 320
BspANI GGCC 5 cut(s) 50, 127, 153, 245, 359
BspCNI CTCAG 3 cut(s) 211, 534, 652
BspLI GGNNCC 4 cut(s) 378, 462, 682, 949
BspPI GGATC 3 cut(s) 371, 384, 470
BspT107I GGYRCC 1 cut(s) 680
BspTI CTTAAG 1 cut(s) 578
BspTNI GGTCTC 2 cut(s) 10, 994
BsrDI GCAATG 1 cut(s) 629
BsrFI RCCGGY 2 cut(s) 206, 683
BsrI ACTGG 2 cut(s) 182, 873
BssAI RCCGGY 2 cut(s) 206, 683
BssECI CCNNGG 4 cut(s) 280, 344, 570, 675
BssMI GATC 3 cut(s) 144, 376, 475
BssSI CACGAG 1 cut(s) 335
BssT1I CCWWGG 2 cut(s) 280, 675
Bst2BI CACGAG 1 cut(s) 335
Bst4CI ACNGT 3 cut(s) 32, 443, 1008
BstAFI CTTAAG 1 cut(s) 578
BstAPI GCANNNNNTGC 1 cut(s) 631
BstC8I GCNNGC 2 cut(s) 208, 904
BstDEI CTNAG 4 cut(s) 219, 542, 635, 660
BstDSI CCRYGG 2 cut(s) 280, 675
BstENI CCTNNNNNAGG 1 cut(s) 722
BstF5I GGATG 1 cut(s) 714
BstH2I RGCGCY 1 cut(s) 578
BstHHI GCGC 1 cut(s) 577
BstKTI GATC 3 cut(s) 147, 379, 478
BstMAI GTCTC 4 cut(s) 10, 38, 432, 994
BstMBI GATC 3 cut(s) 144, 376, 475
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 3 cut(s) 203, 631, 912
BstNSI RCATGY 1 cut(s) 533
BstSCI CCNGG 1 cut(s) 8
BstSLI GKGCMC 1 cut(s) 683
BstV1I GCAGC 4 cut(s) 327, 688, 835, 912
BstX2I RGATCY 2 cut(s) 144, 376
BstXI CCANNNNNNTGG 1 cut(s) 737
BstYI RGATCY 2 cut(s) 144, 376
BstZI CGGCCG 1 cut(s) 151
BsuI GTATCC 1 cut(s) 279
BsuRI GGCC 5 cut(s) 50, 127, 153, 245, 359
BtgI CCRYGG 2 cut(s) 280, 675
BtsCI GGATG 1 cut(s) 714
BtsIMutI CAGTG 1 cut(s) 1004
Cac8I GCNNGC 2 cut(s) 208, 904
CfoI GCGC 1 cut(s) 577
Cfr10I RCCGGY 2 cut(s) 206, 683
Cfr13I GGNCC 4 cut(s) 243, 727, 884, 947
Csp6I GTAC 3 cut(s) 520, 866, 988
CviAII CATG 6 cut(s) 215, 281, 457, 530, 654, 676
CviQI GTAC 3 cut(s) 520, 866, 988
DdeI CTNAG 4 cut(s) 219, 542, 635, 660
DpnI GATC 3 cut(s) 146, 378, 477
DpnII GATC 3 cut(s) 144, 376, 475
EaeI YGGCCR 2 cut(s) 125, 151
EagI CGGCCG 1 cut(s) 151
EclXI CGGCCG 1 cut(s) 151
Eco130I CCWWGG 2 cut(s) 280, 675
Eco147I AGGCCT 1 cut(s) 50
Eco31I GGTCTC 2 cut(s) 10, 994
Eco47I GGWCC 3 cut(s) 727, 884, 947
Eco52I CGGCCG 1 cut(s) 151
Eco57I CTGAAG 3 cut(s) 65, 707, 810
EcoNI CCTNNNNNAGG 1 cut(s) 722
EcoRI GAATTC 1 cut(s) 13
EcoT14I CCWWGG 2 cut(s) 280, 675
ErhI CCWWGG 2 cut(s) 280, 675
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 6 cut(s) 218, 284, 460, 533, 657, 679
FaqI GGGAC 1 cut(s) 92
FatI CATG 6 cut(s) 214, 280, 456, 529, 653, 675
FblI GTMKAC 2 cut(s) 189, 228
Fnu4HI GCNGC 7 cut(s) 128, 246, 318, 341, 702, 824, 926
FokI GGATG 1 cut(s) 701
Fsp4HI GCNGC 7 cut(s) 128, 246, 318, 341, 702, 824, 926
FspBI CTAG 2 cut(s) 797, 995
GlaI GCGC 1 cut(s) 576
GluI GCNGC 7 cut(s) 128, 246, 318, 341, 702, 824, 926
GsaI CCCAGC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 447
HaeII RGCGCY 1 cut(s) 578
HaeIII GGCC 5 cut(s) 50, 127, 153, 245, 359
HapII CCGG 4 cut(s) 9, 93, 207, 684
HhaI GCGC 1 cut(s) 577
Hin1II CATG 6 cut(s) 218, 284, 460, 533, 657, 679
Hin6I GCGC 1 cut(s) 575
HinP1I GCGC 1 cut(s) 575
HincII GTYRAC 3 cut(s) 190, 229, 454
HindII GTYRAC 3 cut(s) 190, 229, 454
HinfI GANTC 7 cut(s) 59, 81, 96, 234, 261, 741, 843
HpaII CCGG 4 cut(s) 9, 93, 207, 684
HphI GGTGA 5 cut(s) 91, 283, 664, 703, 814
Hpy166II GTNNAC 5 cut(s) 190, 229, 454, 740, 805
Hpy188I TCNGA 4 cut(s) 239, 381, 571, 970
Hpy188III TCNNGA 6 cut(s) 335, 464, 473, 482, 725, 847
Hpy8I GTNNAC 5 cut(s) 190, 229, 454, 740, 805
Hpy99I CGWCG 4 cut(s) 59, 89, 191, 233
HpyAV CCTTC 4 cut(s) 40, 61, 234, 613
HpyCH4III ACNGT 3 cut(s) 32, 443, 1008
HpyCH4IV ACGT 1 cut(s) 807
HpyCH4V TGCA 2 cut(s) 501, 823
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 631, 912
HpyF3I CTNAG 4 cut(s) 219, 542, 635, 660
HpySE526I ACGT 1 cut(s) 807
Hsp92II CATG 6 cut(s) 218, 284, 460, 533, 657, 679
HspAI GCGC 1 cut(s) 575
KroI GCCGGC 1 cut(s) 206
KroNI GCCGGC 1 cut(s) 208
Kzo9I GATC 3 cut(s) 144, 376, 475
LmnI GCTCC 1 cut(s) 466
Lsp1109I GCAGC 4 cut(s) 327, 688, 835, 912
LweI GCATC 2 cut(s) 79, 688
MaeI CTAG 2 cut(s) 797, 995
MaeII ACGT 1 cut(s) 807
MaeIII GTNAC 1 cut(s) 547
MalI GATC 3 cut(s) 146, 378, 477
MboI GATC 3 cut(s) 144, 376, 475
MboII GAAGA 1 cut(s) 983
MflI RGATCY 2 cut(s) 144, 376
MhlI GDGCHC 2 cut(s) 683, 861
MluCI AATT 5 cut(s) 13, 114, 430, 560, 747
MlyI GAGTC 2 cut(s) 243, 735
MmeI TCCRAC 3 cut(s) 61, 238, 282
MroNI GCCGGC 1 cut(s) 206
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 4 cut(s) 393, 411, 579, 879
MslI CAYNNNNRTG 3 cut(s) 696, 735, 920
MspA1I CMGCKG 1 cut(s) 43
MspCI CTTAAG 1 cut(s) 578
MspI CCGG 4 cut(s) 9, 93, 207, 684
MspR9I CCNGG 1 cut(s) 10
Mva1269I GAATGC 2 cut(s) 625, 927
MwoI GCNNNNNNNGC 3 cut(s) 203, 631, 912
NaeI GCCGGC 1 cut(s) 208
NciI CCSGG 1 cut(s) 10
NcoI CCATGG 2 cut(s) 280, 675
NdeII GATC 3 cut(s) 144, 376, 475
NgoMIV GCCGGC 1 cut(s) 206
NlaIII CATG 6 cut(s) 218, 284, 460, 533, 657, 679
NlaIV GGNNCC 4 cut(s) 378, 462, 682, 949
NmeAIII GCCGAG 2 cut(s) 369, 385
NmuCI GTSAC 1 cut(s) 547
NspI RCATGY 1 cut(s) 533
OliI CACNNNNGTG 1 cut(s) 735
PceI AGGCCT 1 cut(s) 50
PciI ACATGT 1 cut(s) 529
PctI GAATGC 2 cut(s) 625, 927
PdiI GCCGGC 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 5 cut(s) 59, 81, 96, 261, 843
PflFI GACNNNGTC 1 cut(s) 233
PfoI TCCNGGA 1 cut(s) 8
PkrI GCNGC 7 cut(s) 129, 247, 319, 342, 703, 825, 927
PleI GAGTC 2 cut(s) 242, 735
PpsI GAGTC 2 cut(s) 242, 735
PscI ACATGT 1 cut(s) 529
PsiI TTATAA 1 cut(s) 602
Psp1406I AACGTT 1 cut(s) 807
PspFI CCCAGC 1 cut(s) 68
PspN4I GGNNCC 4 cut(s) 378, 462, 682, 949
PspPI GGNCC 4 cut(s) 243, 727, 884, 947
PsuI RGATCY 2 cut(s) 144, 376
PsyI GACNNNGTC 1 cut(s) 233
PvuII CAGCTG 1 cut(s) 43
RsaI GTAC 3 cut(s) 521, 867, 989
RsaNI GTAC 3 cut(s) 520, 866, 988
RseI CAYNNNNRTG 3 cut(s) 696, 735, 920
SalI GTCGAC 2 cut(s) 188, 227
SaqAI TTAA 4 cut(s) 393, 411, 579, 879
SatI GCNGC 7 cut(s) 128, 246, 318, 341, 702, 824, 926
Sau3AI GATC 3 cut(s) 144, 376, 475
Sau96I GGNCC 4 cut(s) 243, 727, 884, 947
ScaI AGTACT 1 cut(s) 521
SchI GAGTC 2 cut(s) 243, 735
ScrFI CCNGG 1 cut(s) 10
SduI GDGCHC 2 cut(s) 683, 861
SfaNI GCATC 2 cut(s) 79, 688
SinI GGWCC 3 cut(s) 727, 884, 947
SmiMI CAYNNNNRTG 3 cut(s) 696, 735, 920
SmlI CTYRAG 2 cut(s) 480, 578
SmoI CTYRAG 2 cut(s) 480, 578
Sse9I AATT 5 cut(s) 13, 114, 430, 560, 747
SseBI AGGCCT 1 cut(s) 50
SsiI CCGC 4 cut(s) 128, 246, 317, 320
SspMI CTAG 2 cut(s) 797, 995
StuI AGGCCT 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 8
StyI CCWWGG 2 cut(s) 280, 675
TaaI ACNGT 3 cut(s) 32, 443, 1008
TaiI ACGT 1 cut(s) 810
TaqI TCGA 5 cut(s) 54, 87, 189, 228, 420
TasI AATT 5 cut(s) 13, 114, 430, 560, 747
TatI WGTACW 2 cut(s) 519, 987
TauI GCSGC 3 cut(s) 130, 248, 320
TfiI GAWTC 5 cut(s) 59, 81, 96, 261, 843
Tru1I TTAA 4 cut(s) 393, 411, 579, 879
Tru9I TTAA 4 cut(s) 393, 411, 579, 879
TscAI CASTG 1 cut(s) 1011
TseFI GTSAC 1 cut(s) 547
TseI GCWGC 4 cut(s) 340, 701, 823, 925
Tsp45I GTSAC 1 cut(s) 547
TspDTI ATGAA 2 cut(s) 290, 618
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 1 cut(s) 1011
Tth111I GACNNNGTC 1 cut(s) 233
Vha464I CTTAAG 1 cut(s) 578
VpaK11BI GGWCC 3 cut(s) 727, 884, 947
XagI CCTNNNNNAGG 1 cut(s) 722
XapI RAATTY 2 cut(s) 13, 747
XceI RCATGY 1 cut(s) 533
XcmI CCANNNNNNNNNTGG 2 cut(s) 120, 298
XmiI GTMKAC 2 cut(s) 189, 228
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 2 cut(s) 797, 995
ZrmI AGTACT 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.