Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003254

Physical Location & Seq

Genomic Coordinates Reverse (-)

43698813 .. 43700551

Gene Structure 1739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG331400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTTGATGGGATACCCAAAAAAAGAGGAAACGCACAATTACCAGGGGGAATTTTTCCTTAATATTCCCAAAATTAAATATGAGGGGCCCTCTAGTAAGAACCCTCTTGCATACAAATGGTATAATGCAGAGGAGGAGATTCTAGGGAAGAAAATGAACGATTGGTTGAGGTTTAGTGTTGCATTTTGGCACACATTCCGTGGAACAGGAGCTGATCCATTCGGTGCGCCTACAAAAAATTGGCATTGGGTGGATGGAACTTATAACTCTGTTGCTATGGCCAAGAGAAGAATGAAAGCCAACTTTGAGTTCATATATAAGCTTGGAGTCGATAGATGGTGTTTCCATGACAGGGATATTGATCCGGATGGTAAAACCTTGGAGGGTCAATATCCAGGAGTAGCTTGGAATGATCAATTCTTGGCCTCACTGTCATTTGATCTTAGTGCCTCCATGCCTAGAGATAAAAGGAATCTGCTGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00040 ko00051 ko01100 map00040 map00051 map01100

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

18.88

Weight (kDa)

8.56

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57655 AT5G57655
fragaria_vesca	FvH4_4g32520 FvH4_4g32520 FvH4_4g32520
malus_domestica	MD13G1265000.v1.1 MD16G1265900.v1.1
prunus_persica	Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1
pyrus_communis	pycom13g23640 pycom16g23510
rosa_chinensis	RchiOBHm_Chr4g0403601 RchiOBHm_Chr5g0036521 RchiOBHm_Chr5g0046871
rosa_laevigata	RLG00000008967
rosa_multiflora	Rmu_co8193382.1_g000001 Rmu_sc0006376.1_g000016 Rmu_sc0007038.1_g000004
rosa_roxburghii	Rroxscaffold_5G00348230
rosa_rugosa	Rorug04G0044500 Rorug04G0044600 Rorug04G0044600
rosa_samantha	Rh4AG119600 Rh4AG148500 Rh4BG112800 Rh4BG186000 Rh4CG026500 Rh4CG127600 Rh4DG112300 Rh5BG320700 Rh5CG483800 Rh5DG258300 Rh5DG331400 Rh6AG078400
rosa_wichuraiana	Rw4G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	264
AccIII	TCCGGA	1 cut(s)	364
AclWI	GGATC	2 cut(s)	209, 356
AcoI	YGGCCR	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	352
AjnI	CCWGG	2 cut(s)	42, 394
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AluBI	AGCT	3 cut(s)	212, 322, 404
AluI	AGCT	3 cut(s)	212, 322, 404
AlwI	GGATC	2 cut(s)	209, 356
AlwNI	CAGNNNCTG	1 cut(s)	212
Aor13HI	TCCGGA	1 cut(s)	364
AoxI	GGCC	3 cut(s)	86, 279, 423
ApaI	GGGCCC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	478
ApoI	RAATTY	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	2 cut(s)	86, 87
BaeGI	GKGCMC	1 cut(s)	90
BalI	TGGCCA	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	465
BccI	CCATC	3 cut(s)	248, 330, 362
BciT130I	CCWGG	2 cut(s)	44, 396
BciVI	GTATCC	1 cut(s)	5
BclI	TGATCA	1 cut(s)	412
BfaI	CTAG	3 cut(s)	93, 143, 459
BfuI	GTATCC	1 cut(s)	5
BisI	GCNGC	1 cut(s)	479
BlsI	GCNGC	1 cut(s)	480
Bme1390I	CCNGG	2 cut(s)	44, 396
BmgT120I	GGNCC	2 cut(s)	86, 87
BmiI	GGNNCC	2 cut(s)	87, 88
BmrFI	CCNGG	2 cut(s)	44, 396
BplI	GAGNNNNNCTC	2 cut(s)	74, 106
BsaBI	GATNNNNATC	1 cut(s)	360
BsaJI	CCNNGG	3 cut(s)	43, 199, 378
BsaWI	WCCGGW	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse8I	GATNNNNATC	1 cut(s)	360
BseAI	TCCGGA	1 cut(s)	364
BseBI	CCWGG	2 cut(s)	44, 396
BseDI	CCNNGG	3 cut(s)	43, 199, 378
BseGI	GGATG	2 cut(s)	259, 373
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseRI	GAGGAG	2 cut(s)	146, 149
BseSI	GKGCMC	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	465
BsgI	GTGCAG	1 cut(s)	464
BshFI	GGCC	3 cut(s)	88, 281, 425
BsiSI	CCGG	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	352
BsnI	GGCC	3 cut(s)	88, 281, 425
Bsp120I	GGGCCC	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp13I	TCCGGA	1 cut(s)	364
Bsp143I	GATC	4 cut(s)	214, 361, 412, 439
BspANI	GGCC	3 cut(s)	88, 281, 425
BspEI	TCCGGA	1 cut(s)	364
BspLI	GGNNCC	2 cut(s)	87, 88
BspPI	GGATC	2 cut(s)	209, 356
BssECI	CCNNGG	3 cut(s)	43, 199, 378
BssMI	GATC	4 cut(s)	214, 361, 412, 439
BssT1I	CCWWGG	1 cut(s)	378
Bst2UI	CCWGG	2 cut(s)	44, 396
Bst4CI	ACNGT	1 cut(s)	432
BstDEI	CTNAG	1 cut(s)	443
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	2 cut(s)	259, 373
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	4 cut(s)	217, 364, 415, 442
BstMBI	GATC	4 cut(s)	214, 361, 412, 439
BstNI	CCWGG	2 cut(s)	44, 396
BstSCI	CCNGG	2 cut(s)	42, 394
BstSLI	GKGCMC	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	465
BsuI	GTATCC	1 cut(s)	5
BsuRI	GGCC	3 cut(s)	88, 281, 425
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	259, 373
BtsIMutI	CAGTG	2 cut(s)	428, 481
CaiI	CAGNNNCTG	1 cut(s)	212
CfoI	GCGC	1 cut(s)	229
Cfr13I	GGNCC	2 cut(s)	86, 87
CviAII	CATG	2 cut(s)	347, 454
CviJI	RGCY	7 cut(s)	88, 212, 281, 299, 322, 404, 425
CviKI_1	RGCY	7 cut(s)	88, 212, 281, 299, 322, 404, 425
DdeI	CTNAG	1 cut(s)	443
DpnI	GATC	4 cut(s)	216, 363, 414, 441
DpnII	GATC	4 cut(s)	214, 361, 412, 439
EaeI	YGGCCR	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	90
EcoO109I	RGGNCCY	2 cut(s)	86, 87
EcoRII	CCWGG	2 cut(s)	42, 394
EcoT14I	CCWWGG	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	2 cut(s)	350, 457
FatI	CATG	2 cut(s)	346, 453
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	1 cut(s)	479
FokI	GGATG	2 cut(s)	266, 380
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	1 cut(s)	479
FspBI	CTAG	3 cut(s)	93, 143, 459
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	1 cut(s)	479
HaeIII	GGCC	3 cut(s)	88, 281, 425
HapII	CCGG	1 cut(s)	365
HhaI	GCGC	1 cut(s)	229
Hin1II	CATG	2 cut(s)	350, 457
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	3 cut(s)	139, 327, 472
HpaII	CCGG	1 cut(s)	365
Hpy188III	TCNNGA	1 cut(s)	365
HpyCH4III	ACNGT	1 cut(s)	432
HpyCH4V	TGCA	4 cut(s)	110, 128, 182, 481
HpyF3I	CTNAG	1 cut(s)	443
Hsp92II	CATG	2 cut(s)	350, 457
HspAI	GCGC	1 cut(s)	227
Kpn2I	TCCGGA	1 cut(s)	364
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	4 cut(s)	214, 361, 412, 439
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	7 cut(s)	29, 56, 192, 337, 378, 381, 408
Lsp1109I	GCAGC	1 cut(s)	465
MaeI	CTAG	3 cut(s)	93, 143, 459
MalI	GATC	4 cut(s)	216, 363, 414, 441
MboI	GATC	4 cut(s)	214, 361, 412, 439
MboII	GAAGA	2 cut(s)	160, 300
MhlI	GDGCHC	1 cut(s)	90
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	5 cut(s)	37, 50, 72, 238, 416
MluNI	TGGCCA	1 cut(s)	281
MlyI	GAGTC	1 cut(s)	336
Mox20I	TGGCCA	1 cut(s)	281
MroI	TCCGGA	1 cut(s)	364
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	2 cut(s)	60, 75
MslI	CAYNNNNRTG	1 cut(s)	115
Msp20I	TGGCCA	1 cut(s)	281
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	2 cut(s)	44, 396
MvaI	CCWGG	2 cut(s)	44, 396
NdeII	GATC	4 cut(s)	214, 361, 412, 439
NlaIII	CATG	2 cut(s)	350, 457
NlaIV	GGNNCC	2 cut(s)	87, 88
PfeI	GAWTC	2 cut(s)	139, 472
PfoI	TCCNGGA	1 cut(s)	394
PkrI	GCNGC	1 cut(s)	480
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
PsiI	TTATAA	1 cut(s)	264
Psp6I	CCWGG	2 cut(s)	42, 394
PspGI	CCWGG	2 cut(s)	42, 394
PspN4I	GGNNCC	2 cut(s)	87, 88
PspOMI	GGGCCC	1 cut(s)	86
PspPI	GGNCC	2 cut(s)	86, 87
PstNI	CAGNNNCTG	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	115
SaqAI	TTAA	2 cut(s)	60, 75
SatI	GCNGC	1 cut(s)	479
Sau3AI	GATC	4 cut(s)	214, 361, 412, 439
Sau96I	GGNCC	2 cut(s)	86, 87
SchI	GAGTC	1 cut(s)	336
ScrFI	CCNGG	2 cut(s)	44, 396
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	5 cut(s)	173, 214, 324, 380, 406
SmiMI	CAYNNNNRTG	1 cut(s)	115
Sse9I	AATT	5 cut(s)	37, 50, 72, 238, 416
SspI	AATATT	1 cut(s)	64
SspMI	CTAG	3 cut(s)	93, 143, 459
StyD4I	CCNGG	2 cut(s)	42, 394
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	1 cut(s)	432
TaqI	TCGA	1 cut(s)	330
TasI	AATT	5 cut(s)	37, 50, 72, 238, 416
TfiI	GAWTC	2 cut(s)	139, 472
Tru1I	TTAA	2 cut(s)	60, 75
Tru9I	TTAA	2 cut(s)	60, 75
TscAI	CASTG	1 cut(s)	435
TseI	GCWGC	1 cut(s)	478
TspDTI	ATGAA	3 cut(s)	170, 301, 308
TspGWI	ACGGA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	435
XapI	RAATTY	1 cut(s)	50
XcmI	CCANNNNNNNNNTGG	1 cut(s)	402
XspI	CTAG	3 cut(s)	93, 143, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.