Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003254

Physical Location & Seq

Genomic Coordinates Reverse (-)

30795472 .. 30798166

Gene Structure 2695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG258300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTTGTTTTTGATTGGTCAAGTTTTGCACATACTGCATTATTGTTCTAAGAATTTTTTCTCAGCAGAACTGTTTTCATCTGTATATCTTTTTATCTTGCAGGGCCCCTCTAGTAAGAACCCCCTTGCATACAAATGGTATAATGCAAAGGAGGCGATTCTGGGGAAGAAAATGAAAGATTGGTTGAGGTTTAGTGTTGCATTTGGGCACACATTCGGTGGAACAGGAGCTGACCCATTCGGTGCGCCTAAAAAAAATGGGCATGGGGAGGATGGAACTTATAACTCTGTTGCTATGGCCAAGAGAAGAATGAAAGCCAACTTTGAGTTCATATATAAGTTTGGAGTCTATAGGTGGTGTTTCCATGACTGGGATATTGCTCCGGATGGCAAAACCTTGGAGGTAAATAATTCCTTAAGGTTACTTTTATTGATACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00040 ko00051 ko01100 map00040 map00051 map01100

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.72

Weight (kDa)

9.46

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57655 AT5G57655
fragaria_vesca	FvH4_4g32520 FvH4_4g32520 FvH4_4g32520
malus_domestica	MD13G1265000.v1.1 MD16G1265900.v1.1
prunus_persica	Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1
pyrus_communis	pycom13g23640 pycom16g23510
rosa_chinensis	RchiOBHm_Chr4g0403601 RchiOBHm_Chr5g0036521 RchiOBHm_Chr5g0046871
rosa_laevigata	RLG00000008967
rosa_multiflora	Rmu_co8193382.1_g000001 Rmu_sc0006376.1_g000016 Rmu_sc0007038.1_g000004
rosa_roxburghii	Rroxscaffold_5G00348230
rosa_rugosa	Rorug04G0044500 Rorug04G0044600 Rorug04G0044600
rosa_samantha	Rh4AG119600 Rh4AG148500 Rh4BG112800 Rh4BG186000 Rh4CG026500 Rh4CG127600 Rh4DG112300 Rh5BG320700 Rh5CG483800 Rh5DG258300 Rh5DG331400 Rh6AG078400
rosa_wichuraiana	Rw4G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	282
AccIII	TCCGGA	1 cut(s)	382
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	52
AfiI	CCNNNNNNNGG	1 cut(s)	370
AflII	CTTAAG	1 cut(s)	415
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AluBI	AGCT	1 cut(s)	230
AluI	AGCT	1 cut(s)	230
AlwNI	CAGNNNCTG	1 cut(s)	230
Aor13HI	TCCGGA	1 cut(s)	382
AoxI	GGCC	2 cut(s)	103, 297
ApaI	GGGCCC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	52
Asp700I	GAANNNNTTC	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	2 cut(s)	103, 104
BaeGI	GKGCMC	2 cut(s)	107, 210
BalI	TGGCCA	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	107
BccI	CCATC	2 cut(s)	266, 380
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	349
BfrI	CTTAAG	1 cut(s)	415
BmgT120I	GGNCC	2 cut(s)	103, 104
BmiI	GGNNCC	2 cut(s)	105, 106
BmrI	ACTGGG	1 cut(s)	379
BmuI	ACTGGG	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	396
BsaWI	WCCGGW	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
Bse1I	ACTGG	1 cut(s)	374
BseAI	TCCGGA	1 cut(s)	382
BseDI	CCNNGG	1 cut(s)	396
BseGI	GGATG	2 cut(s)	277, 391
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	374
BseSI	GKGCMC	2 cut(s)	107, 210
BshFI	GGCC	2 cut(s)	105, 299
BsiSI	CCGG	1 cut(s)	383
BslI	CCNNNNNNNGG	1 cut(s)	370
BsnI	GGCC	2 cut(s)	105, 299
Bsp120I	GGGCCC	1 cut(s)	103
Bsp1286I	GDGCHC	2 cut(s)	107, 210
Bsp13I	TCCGGA	1 cut(s)	382
BspANI	GGCC	2 cut(s)	105, 299
BspCNI	CTCAG	1 cut(s)	74
BspEI	TCCGGA	1 cut(s)	382
BspLI	GGNNCC	2 cut(s)	105, 106
BspTI	CTTAAG	1 cut(s)	415
BsrI	ACTGG	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	396
BssT1I	CCWWGG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	72
BstAFI	CTTAAG	1 cut(s)	415
BstAPI	GCANNNNNTGC	1 cut(s)	34
BstDEI	CTNAG	2 cut(s)	48, 61
BstF5I	GGATG	2 cut(s)	277, 391
BstHHI	GCGC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 152
BstSFI	CTRYAG	1 cut(s)	349
BstSLI	GKGCMC	2 cut(s)	107, 210
BsuRI	GGCC	2 cut(s)	105, 299
BtsCI	GGATG	2 cut(s)	277, 391
CaiI	CAGNNNCTG	1 cut(s)	230
CfoI	GCGC	1 cut(s)	247
Cfr13I	GGNCC	2 cut(s)	103, 104
CviAII	CATG	2 cut(s)	263, 365
CviJI	RGCY	4 cut(s)	105, 230, 299, 317
CviKI_1	RGCY	4 cut(s)	105, 230, 299, 317
DdeI	CTNAG	2 cut(s)	48, 61
EaeI	YGGCCR	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	107
EcoO109I	RGGNCCY	2 cut(s)	103, 104
EcoT14I	CCWWGG	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	2 cut(s)	266, 368
FatI	CATG	2 cut(s)	262, 364
FokI	GGATG	2 cut(s)	284, 398
FriOI	GRGCYC	1 cut(s)	107
FspBI	CTAG	1 cut(s)	111
GlaI	GCGC	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	105, 299
HapII	CCGG	1 cut(s)	383
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	2 cut(s)	266, 368
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HinfI	GANTC	2 cut(s)	157, 345
HpaII	CCGG	1 cut(s)	383
Hpy188III	TCNNGA	1 cut(s)	383
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4V	TGCA	6 cut(s)	28, 37, 100, 128, 146, 200
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 152
HpyF3I	CTNAG	2 cut(s)	48, 61
Hsp92II	CATG	2 cut(s)	266, 368
HspAI	GCGC	1 cut(s)	245
Kpn2I	TCCGGA	1 cut(s)	382
LmnI	GCTCC	2 cut(s)	227, 385
LpnPI	CCDG	5 cut(s)	86, 146, 210, 355, 396
MaeI	CTAG	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	420
MboII	GAAGA	2 cut(s)	178, 318
MhlI	GDGCHC	2 cut(s)	107, 210
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	2 cut(s)	52, 409
MluNI	TGGCCA	1 cut(s)	299
MlyI	GAGTC	1 cut(s)	354
MnlI	CCTC	5 cut(s)	118, 145, 180, 262, 394
Mox20I	TGGCCA	1 cut(s)	299
MroI	TCCGGA	1 cut(s)	382
MroXI	GAANNNNTTC	1 cut(s)	56
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	1 cut(s)	416
MslI	CAYNNNNRTG	1 cut(s)	133
Msp20I	TGGCCA	1 cut(s)	299
MspCI	CTTAAG	1 cut(s)	415
MspI	CCGG	1 cut(s)	383
MwoI	GCNNNNNNNGC	2 cut(s)	34, 152
NlaIII	CATG	2 cut(s)	266, 368
NlaIV	GGNNCC	2 cut(s)	105, 106
PdmI	GAANNNNTTC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	157
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
PsiI	TTATAA	1 cut(s)	282
PspN4I	GGNNCC	2 cut(s)	105, 106
PspOMI	GGGCCC	1 cut(s)	103
PspPI	GGNCC	2 cut(s)	103, 104
PstNI	CAGNNNCTG	1 cut(s)	230
RseI	CAYNNNNRTG	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	416
Sau96I	GGNCC	2 cut(s)	103, 104
SchI	GAGTC	1 cut(s)	354
SduI	GDGCHC	2 cut(s)	107, 210
SetI	ASST	6 cut(s)	191, 232, 356, 398, 405, 422
SfcI	CTRYAG	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	415
SmoI	CTYRAG	1 cut(s)	415
Sse9I	AATT	2 cut(s)	52, 409
SspMI	CTAG	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	72
TasI	AATT	2 cut(s)	52, 409
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	416
Tru9I	TTAA	1 cut(s)	416
TspDTI	ATGAA	4 cut(s)	66, 188, 319, 326
Vha464I	CTTAAG	1 cut(s)	415
XapI	RAATTY	1 cut(s)	52
XmnI	GAANNNNTTC	1 cut(s)	56
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.