Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8193382.1

Orthogroup ID

OG0003254

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 366

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8193382.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 173 bp

tgaaagccaactttgagttcataaataagcttggagtcgataggtggtgtttccatgacagggatattgctccggatggcaaaaccttggaggaaactaataaaaacttggatgaggtggtggcccttgccaaggagcttcaggtaagtttgtacaagtacaccatgaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00040 ko00051 ko01100 map00040 map00051 map01100

Pfam Domains

Protein Families

No domains found.

Protein Analysis

56

Amino Acids

6.55

Weight (kDa)

5.72

Isoelectric Point (pI)

25.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57655 AT5G57655
fragaria_vesca	FvH4_4g32520 FvH4_4g32520 FvH4_4g32520
malus_domestica	MD13G1265000.v1.1 MD16G1265900.v1.1
prunus_persica	Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1
pyrus_communis	pycom13g23640 pycom16g23510
rosa_chinensis	RchiOBHm_Chr4g0403601 RchiOBHm_Chr5g0036521 RchiOBHm_Chr5g0046871
rosa_laevigata	RLG00000008967
rosa_multiflora	Rmu_co8193382.1_g000001 Rmu_sc0006376.1_g000016 Rmu_sc0007038.1_g000004
rosa_roxburghii	Rroxscaffold_5G00348230
rosa_rugosa	Rorug04G0044500 Rorug04G0044600 Rorug04G0044600
rosa_samantha	Rh4AG119600 Rh4AG148500 Rh4BG112800 Rh4BG186000 Rh4CG026500 Rh4CG127600 Rh4DG112300 Rh5BG320700 Rh5CG483800 Rh5DG258300 Rh5DG331400 Rh6AG078400
rosa_wichuraiana	Rw4G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	72
AcuI	CTGAAG	1 cut(s)	124
AfaI	GTAC	2 cut(s)	154, 160
AfiI	CCNNNNNNNGG	2 cut(s)	60, 132
AjuI	GAANNNNNNNTTGG	1 cut(s)	33
AluBI	AGCT	2 cut(s)	30, 138
AluI	AGCT	2 cut(s)	30, 138
Aor13HI	TCCGGA	1 cut(s)	72
AoxI	GGCC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	123
BccI	CCATC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	86, 131
BsaWI	WCCGGW	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 132
BseAI	TCCGGA	1 cut(s)	72
BseDI	CCNNGG	2 cut(s)	86, 131
BseGI	GGATG	2 cut(s)	81, 117
BseLI	CCNNNNNNNGG	2 cut(s)	60, 132
BshFI	GGCC	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	73
BslI	CCNNNNNNNGG	2 cut(s)	60, 132
BsnI	GGCC	1 cut(s)	124
Bsp13I	TCCGGA	1 cut(s)	72
Bsp1407I	TGTACA	1 cut(s)	152
BspANI	GGCC	1 cut(s)	124
BspEI	TCCGGA	1 cut(s)	72
BsrGI	TGTACA	1 cut(s)	152
BssECI	CCNNGG	2 cut(s)	86, 131
BssT1I	CCWWGG	2 cut(s)	86, 131
BstAUI	TGTACA	1 cut(s)	152
BstENI	CCTNNNNNAGG	1 cut(s)	130
BstF5I	GGATG	2 cut(s)	81, 117
BsuRI	GGCC	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	81, 117
Cfr13I	GGNCC	1 cut(s)	123
Csp6I	GTAC	2 cut(s)	153, 159
CviAII	CATG	2 cut(s)	55, 165
CviJI	RGCY	4 cut(s)	7, 30, 124, 138
CviKI_1	RGCY	4 cut(s)	7, 30, 124, 138
CviQI	GTAC	2 cut(s)	153, 159
Eco130I	CCWWGG	2 cut(s)	86, 131
Eco57I	CTGAAG	1 cut(s)	124
EcoNI	CCTNNNNNAGG	1 cut(s)	130
EcoT14I	CCWWGG	2 cut(s)	86, 131
ErhI	CCWWGG	2 cut(s)	86, 131
FaeI	CATG	2 cut(s)	58, 168
FaiI	YATR	3 cut(s)	22, 56, 166
FatI	CATG	2 cut(s)	54, 164
FokI	GGATG	2 cut(s)	88, 124
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	1 cut(s)	73
Hin1II	CATG	2 cut(s)	58, 168
HindIII	AAGCTT	1 cut(s)	28
HinfI	GANTC	1 cut(s)	35
HpaII	CCGG	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	161
Hsp92II	CATG	2 cut(s)	58, 168
Kpn2I	TCCGGA	1 cut(s)	72
LmnI	GCTCC	2 cut(s)	75, 135
LpnPI	CCDG	3 cut(s)	45, 86, 127
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	2 cut(s)	84, 108
MroI	TCCGGA	1 cut(s)	72
MspI	CCGG	1 cut(s)	73
NlaIII	CATG	2 cut(s)	58, 168
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	123
RsaI	GTAC	2 cut(s)	154, 160
RsaNI	GTAC	2 cut(s)	153, 159
Sau96I	GGNCC	1 cut(s)	123
SchI	GAGTC	1 cut(s)	44
SetI	ASST	6 cut(s)	32, 46, 88, 119, 140, 146
StyI	CCWWGG	2 cut(s)	86, 131
TaqI	TCGA	1 cut(s)	38
TatI	WGTACW	2 cut(s)	152, 158
TspDTI	ATGAA	1 cut(s)	9
XagI	CCTNNNNNAGG	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.