Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003254

Physical Location & Seq

Genomic Coordinates Reverse (-)

5118346 .. 5132886

Gene Structure 14541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG026500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGGGTGGTTCCCATTCAGTCATTTACATGTGGATCAAAGATCAAATTGTTCCAAAGGGCAAACGGCAAACATATCTGAAATGGGAGTTAGAAAATGGGAAAGGATTGATTGGTTGAGGTTTAGTGTTGCATTTTGGCACACATTCCGTGGAACAGGAGCTGATCCATTCGGTGCGCCTACAAAAAATTGGCATTGGGTGGATGGAACTTATAACTCTGTTGCTATGGCCAAGAGAAGAATGAAAGCCAACTTTGAGTTCATATATAAGCTTGGAGTCGATAGTTTGTGTTTCCATGACAGGGATATTGATCCGGATGGTAAAACCTTGGAGGACGAAAACAGCAAAGCTGAAGAAGCAAAACAGAATAAGACAGATAAGATCTACAACCGATACAAAGATTCATCTGTGATGAATGATAGCAATGGTAACAGCTATAAAATGTTCCTGATAGTCAGTGGTCTTGCAAGTGGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00040 ko00051 ko01100 map00040 map00051 map01100

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

18.29

Weight (kDa)

8.51

Isoelectric Point (pI)

31.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57655 AT5G57655
fragaria_vesca	FvH4_4g32520 FvH4_4g32520 FvH4_4g32520
malus_domestica	MD13G1265000.v1.1 MD16G1265900.v1.1
prunus_persica	Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1
pyrus_communis	pycom13g23640 pycom16g23510
rosa_chinensis	RchiOBHm_Chr4g0403601 RchiOBHm_Chr5g0036521 RchiOBHm_Chr5g0046871
rosa_laevigata	RLG00000008967
rosa_multiflora	Rmu_co8193382.1_g000001 Rmu_sc0006376.1_g000016 Rmu_sc0007038.1_g000004
rosa_roxburghii	Rroxscaffold_5G00348230
rosa_rugosa	Rorug04G0044500 Rorug04G0044600 Rorug04G0044600
rosa_samantha	Rh4AG119600 Rh4AG148500 Rh4BG112800 Rh4BG186000 Rh4CG026500 Rh4CG127600 Rh4DG112300 Rh5BG320700 Rh5CG483800 Rh5DG258300 Rh5DG331400 Rh6AG078400
rosa_wichuraiana	Rw4G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	213
AccIII	TCCGGA	1 cut(s)	313
AclWI	GGATC	3 cut(s)	42, 158, 305
AcoI	YGGCCR	1 cut(s)	228
AcuI	CTGAAG	1 cut(s)	372
AfiI	CCNNNNNNNGG	1 cut(s)	301
AflIII	ACRYGT	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AluBI	AGCT	4 cut(s)	161, 271, 350, 435
AluI	AGCT	4 cut(s)	161, 271, 350, 435
AlwI	GGATC	3 cut(s)	42, 158, 305
AlwNI	CAGNNNCTG	1 cut(s)	161
Aor13HI	TCCGGA	1 cut(s)	313
AoxI	GGCC	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	178
BalI	TGGCCA	1 cut(s)	230
BccI	CCATC	2 cut(s)	197, 311
BceAI	ACGGC	1 cut(s)	81
BglII	AGATCT	1 cut(s)	381
BmiI	GGNNCC	1 cut(s)	11
BsaBI	GATNNNNATC	1 cut(s)	309
BsaJI	CCNNGG	2 cut(s)	148, 327
BsaWI	WCCGGW	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse3DI	GCAATG	1 cut(s)	430
Bse8I	GATNNNNATC	1 cut(s)	309
BseAI	TCCGGA	1 cut(s)	313
BseDI	CCNNGG	2 cut(s)	148, 327
BseGI	GGATG	2 cut(s)	208, 322
BseJI	GATNNNNATC	1 cut(s)	309
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMI	GCAATG	1 cut(s)	430
BshFI	GGCC	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	314
BslI	CCNNNNNNNGG	1 cut(s)	301
BsnI	GGCC	1 cut(s)	230
Bsp13I	TCCGGA	1 cut(s)	313
Bsp143I	GATC	5 cut(s)	34, 41, 163, 310, 381
BspANI	GGCC	1 cut(s)	230
BspEI	TCCGGA	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	11
BspPI	GGATC	3 cut(s)	42, 158, 305
BsrDI	GCAATG	1 cut(s)	430
BssECI	CCNNGG	2 cut(s)	148, 327
BssMI	GATC	5 cut(s)	34, 41, 163, 310, 381
BssT1I	CCWWGG	1 cut(s)	327
BstDSI	CCRYGG	1 cut(s)	148
BstF5I	GGATG	2 cut(s)	208, 322
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	5 cut(s)	37, 44, 166, 313, 384
BstMBI	GATC	5 cut(s)	34, 41, 163, 310, 381
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	32
BstX2I	RGATCY	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	381
BsuRI	GGCC	1 cut(s)	230
BtgI	CCRYGG	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	208, 322
BtsIMutI	CAGTG	1 cut(s)	463
CaiI	CAGNNNCTG	1 cut(s)	161
CfoI	GCGC	1 cut(s)	178
CviAII	CATG	2 cut(s)	29, 296
CviJI	RGCY	6 cut(s)	161, 230, 248, 271, 350, 435
CviKI_1	RGCY	6 cut(s)	161, 230, 248, 271, 350, 435
DpnI	GATC	5 cut(s)	36, 43, 165, 312, 383
DpnII	GATC	5 cut(s)	34, 41, 163, 310, 381
EaeI	YGGCCR	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	327
Eco57I	CTGAAG	1 cut(s)	372
EcoT14I	CCWWGG	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	2 cut(s)	32, 299
FaiI	YATR	9 cut(s)	30, 74, 213, 227, 263, 265, 267, 297, 438
FatI	CATG	2 cut(s)	28, 295
FokI	GGATG	2 cut(s)	215, 329
GlaI	GCGC	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	1 cut(s)	314
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	2 cut(s)	32, 299
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	2 cut(s)	276, 401
HpaII	CCGG	1 cut(s)	314
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	2 cut(s)	314, 448
HpyCH4V	TGCA	2 cut(s)	131, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
Hsp92II	CATG	2 cut(s)	32, 299
HspAI	GCGC	1 cut(s)	176
Kpn2I	TCCGGA	1 cut(s)	313
Kzo9I	GATC	5 cut(s)	34, 41, 163, 310, 381
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	4 cut(s)	141, 286, 327, 461
MaeIII	GTNAC	1 cut(s)	428
MalI	GATC	5 cut(s)	36, 43, 165, 312, 383
MboI	GATC	5 cut(s)	34, 41, 163, 310, 381
MboII	GAAGA	2 cut(s)	249, 365
MflI	RGATCY	1 cut(s)	381
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	2 cut(s)	46, 187
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	285
MnlI	CCTC	2 cut(s)	111, 325
Mox20I	TGGCCA	1 cut(s)	230
MroI	TCCGGA	1 cut(s)	313
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	1 cut(s)	478
MslI	CAYNNNNRTG	1 cut(s)	27
Msp20I	TGGCCA	1 cut(s)	230
MspI	CCGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	1 cut(s)	356
NdeII	GATC	5 cut(s)	34, 41, 163, 310, 381
NlaIII	CATG	2 cut(s)	32, 299
NlaIV	GGNNCC	1 cut(s)	11
NspI	RCATGY	1 cut(s)	32
PciI	ACATGT	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	401
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
PscI	ACATGT	1 cut(s)	28
PsiI	TTATAA	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	11
PstNI	CAGNNNCTG	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	381
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	478
Sau3AI	GATC	5 cut(s)	34, 41, 163, 310, 381
SchI	GAGTC	1 cut(s)	285
SetI	ASST	6 cut(s)	122, 163, 273, 329, 352, 437
SmiMI	CAYNNNNRTG	1 cut(s)	27
Sse9I	AATT	2 cut(s)	46, 187
StyI	CCWWGG	1 cut(s)	327
TaqI	TCGA	1 cut(s)	279
TasI	AATT	2 cut(s)	46, 187
TfiI	GAWTC	1 cut(s)	401
Tru1I	TTAA	1 cut(s)	478
Tru9I	TTAA	1 cut(s)	478
TscAI	CASTG	1 cut(s)	463
TspDTI	ATGAA	4 cut(s)	250, 257, 393, 428
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	1 cut(s)	463
XceI	RCATGY	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.