Xylose isomerase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G57655 AT5G57655 |
| fragaria_vesca | FvH4_4g32520 FvH4_4g32520 FvH4_4g32520 |
| malus_domestica | MD13G1265000.v1.1 MD16G1265900.v1.1 |
| prunus_persica | Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1 Prupe.1G091900_v2.0.a1 |
| pyrus_communis | pycom13g23640 pycom16g23510 |
| rosa_chinensis | RchiOBHm_Chr4g0403601 RchiOBHm_Chr5g0036521 RchiOBHm_Chr5g0046871 |
| rosa_laevigata | RLG00000008967 |
| rosa_multiflora | Rmu_co8193382.1_g000001 Rmu_sc0006376.1_g000016 Rmu_sc0007038.1_g000004 |
| rosa_roxburghii | Rroxscaffold_5G00348230 |
| rosa_rugosa | Rorug04G0044500 Rorug04G0044600 Rorug04G0044600 |
| rosa_samantha | Rh4AG119600 Rh4AG148500 Rh4BG112800 Rh4BG186000 Rh4CG026500 Rh4CG127600 Rh4DG112300 Rh5BG320700 Rh5CG483800 Rh5DG258300 Rh5DG331400 Rh6AG078400 |
| rosa_wichuraiana | Rw4G009720 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 86 |
| AcuI | CTGAAG | 2 cut(s) | 246, 259 |
| AfaI | GTAC | 1 cut(s) | 261 |
| AgsI | TTSAA | 1 cut(s) | 7 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 304 |
| AjnI | CCWGG | 1 cut(s) | 42 |
| AluBI | AGCT | 3 cut(s) | 318, 348, 358 |
| AluI | AGCT | 3 cut(s) | 318, 348, 358 |
| Alw21I | GWGCWC | 1 cut(s) | 273 |
| AoxI | GGCC | 1 cut(s) | 121 |
| ApaI | GGGCCC | 1 cut(s) | 125 |
| ApoI | RAATTY | 1 cut(s) | 86 |
| AspS9I | GGNCC | 2 cut(s) | 121, 122 |
| AsuII | TTCGAA | 1 cut(s) | 351 |
| BaeGI | GKGCMC | 1 cut(s) | 125 |
| BanII | GRGCYC | 1 cut(s) | 125 |
| Bbv12I | GWGCWC | 1 cut(s) | 273 |
| BciT130I | CCWGG | 1 cut(s) | 44 |
| BciVI | GTATCC | 1 cut(s) | 5 |
| BfaI | CTAG | 1 cut(s) | 129 |
| BfuI | GTATCC | 1 cut(s) | 5 |
| BlpI | GCTNAGC | 1 cut(s) | 319 |
| Bme1390I | CCNGG | 1 cut(s) | 44 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 304 |
| BmgT120I | GGNCC | 2 cut(s) | 121, 122 |
| BmiI | GGNNCC | 2 cut(s) | 123, 124 |
| BmrFI | CCNGG | 1 cut(s) | 44 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 110, 142 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 319 |
| Bpu14I | TTCGAA | 1 cut(s) | 351 |
| BsaJI | CCNNGG | 1 cut(s) | 43 |
| BseBI | CCWGG | 1 cut(s) | 44 |
| BseDI | CCNNGG | 1 cut(s) | 43 |
| BseRI | GAGGAG | 2 cut(s) | 182, 185 |
| BseSI | GKGCMC | 1 cut(s) | 125 |
| BshFI | GGCC | 1 cut(s) | 123 |
| BsiHKAI | GWGCWC | 1 cut(s) | 273 |
| BslFI | GGGAC | 1 cut(s) | 221 |
| BsmFI | GGGAC | 1 cut(s) | 221 |
| BsnI | GGCC | 1 cut(s) | 123 |
| Bsp119I | TTCGAA | 1 cut(s) | 351 |
| Bsp120I | GGGCCC | 1 cut(s) | 121 |
| Bsp1286I | GDGCHC | 2 cut(s) | 125, 273 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 319 |
| BspANI | GGCC | 1 cut(s) | 123 |
| BspLI | GGNNCC | 2 cut(s) | 123, 124 |
| BspQI | GCTCTTC | 2 cut(s) | 278, 348 |
| BspT104I | TTCGAA | 1 cut(s) | 351 |
| BssECI | CCNNGG | 1 cut(s) | 43 |
| Bst2UI | CCWGG | 1 cut(s) | 44 |
| Bst4CI | ACNGT | 1 cut(s) | 296 |
| Bst6I | CTCTTC | 2 cut(s) | 278, 348 |
| BstBI | TTCGAA | 1 cut(s) | 351 |
| BstDEI | CTNAG | 1 cut(s) | 319 |
| BstNI | CCWGG | 1 cut(s) | 44 |
| BstSCI | CCNGG | 1 cut(s) | 42 |
| BstSLI | GKGCMC | 1 cut(s) | 125 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 62 |
| BsuI | GTATCC | 1 cut(s) | 5 |
| BsuRI | GGCC | 1 cut(s) | 123 |
| BtsIMutI | CAGTG | 1 cut(s) | 301 |
| Cfr13I | GGNCC | 2 cut(s) | 121, 122 |
| Csp6I | GTAC | 1 cut(s) | 260 |
| CviJI | RGCY | 5 cut(s) | 123, 318, 323, 348, 358 |
| CviKI_1 | RGCY | 5 cut(s) | 123, 318, 323, 348, 358 |
| CviQI | GTAC | 1 cut(s) | 260 |
| DdeI | CTNAG | 1 cut(s) | 319 |
| DriI | GACNNNNNGTC | 1 cut(s) | 304 |
| Eam1104I | CTCTTC | 2 cut(s) | 278, 348 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 304 |
| EarI | CTCTTC | 2 cut(s) | 278, 348 |
| Eco24I | GRGCYC | 1 cut(s) | 125 |
| Eco57I | CTGAAG | 2 cut(s) | 246, 259 |
| EcoO109I | RGGNCCY | 2 cut(s) | 121, 122 |
| EcoRII | CCWGG | 1 cut(s) | 42 |
| EcoT38I | GRGCYC | 1 cut(s) | 125 |
| FaiI | YATR | 4 cut(s) | 117, 148, 159, 218 |
| FaqI | GGGAC | 1 cut(s) | 221 |
| FriOI | GRGCYC | 1 cut(s) | 125 |
| FspBI | CTAG | 1 cut(s) | 129 |
| HaeIII | GGCC | 1 cut(s) | 123 |
| HindIII | AAGCTT | 1 cut(s) | 316 |
| Hpy188I | TCNGA | 1 cut(s) | 278 |
| Hpy99I | CGWCG | 1 cut(s) | 267 |
| HpyCH4III | ACNGT | 1 cut(s) | 296 |
| HpyCH4IV | ACGT | 1 cut(s) | 262 |
| HpyCH4V | TGCA | 2 cut(s) | 146, 164 |
| HpyF3I | CTNAG | 1 cut(s) | 319 |
| HpySE526I | ACGT | 1 cut(s) | 262 |
| LguI | GCTCTTC | 2 cut(s) | 278, 348 |
| LpnPI | CCDG | 4 cut(s) | 29, 30, 54, 56 |
| MaeI | CTAG | 1 cut(s) | 129 |
| MaeII | ACGT | 1 cut(s) | 262 |
| MaeIII | GTNAC | 1 cut(s) | 296 |
| MboII | GAAGA | 4 cut(s) | 196, 265, 338, 365 |
| MhlI | GDGCHC | 2 cut(s) | 125, 273 |
| MluCI | AATT | 4 cut(s) | 37, 56, 86, 108 |
| MnlI | CCTC | 7 cut(s) | 19, 112, 136, 160, 163, 198, 334 |
| MseI | TTAA | 3 cut(s) | 111, 242, 284 |
| MslI | CAYNNNNRTG | 1 cut(s) | 151 |
| MspR9I | CCNGG | 1 cut(s) | 44 |
| MvaI | CCWGG | 1 cut(s) | 44 |
| NlaIV | GGNNCC | 2 cut(s) | 123, 124 |
| NmuCI | GTSAC | 1 cut(s) | 296 |
| NspV | TTCGAA | 1 cut(s) | 351 |
| PciSI | GCTCTTC | 2 cut(s) | 278, 348 |
| Psp6I | CCWGG | 1 cut(s) | 42 |
| PspGI | CCWGG | 1 cut(s) | 42 |
| PspN4I | GGNNCC | 2 cut(s) | 123, 124 |
| PspOMI | GGGCCC | 1 cut(s) | 121 |
| PspPI | GGNCC | 2 cut(s) | 121, 122 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 271, 303 |
| RsaI | GTAC | 1 cut(s) | 261 |
| RsaNI | GTAC | 1 cut(s) | 260 |
| RseI | CAYNNNNRTG | 1 cut(s) | 151 |
| SapI | GCTCTTC | 2 cut(s) | 278, 348 |
| SaqAI | TTAA | 3 cut(s) | 111, 242, 284 |
| Sau96I | GGNCC | 2 cut(s) | 121, 122 |
| ScrFI | CCNGG | 1 cut(s) | 44 |
| SduI | GDGCHC | 2 cut(s) | 125, 273 |
| SetI | ASST | 4 cut(s) | 265, 320, 350, 360 |
| SfuI | TTCGAA | 1 cut(s) | 351 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 151 |
| Sse9I | AATT | 4 cut(s) | 37, 56, 86, 108 |
| SspI | AATATT | 2 cut(s) | 100, 247 |
| SspMI | CTAG | 1 cut(s) | 129 |
| StyD4I | CCNGG | 1 cut(s) | 42 |
| TaaI | ACNGT | 1 cut(s) | 296 |
| TaiI | ACGT | 1 cut(s) | 265 |
| TaqI | TCGA | 2 cut(s) | 339, 351 |
| TasI | AATT | 4 cut(s) | 37, 56, 86, 108 |
| Tru1I | TTAA | 3 cut(s) | 111, 242, 284 |
| Tru9I | TTAA | 3 cut(s) | 111, 242, 284 |
| TscAI | CASTG | 1 cut(s) | 301 |
| TseFI | GTSAC | 1 cut(s) | 296 |
| Tsp45I | GTSAC | 1 cut(s) | 296 |
| TspDTI | ATGAA | 2 cut(s) | 206, 248 |
| TspRI | CASTG | 1 cut(s) | 301 |
| XapI | RAATTY | 1 cut(s) | 86 |
| XspI | CTAG | 1 cut(s) | 129 |