Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001514

Physical Location & Seq

Genomic Coordinates Forward (+)

14530246 .. 14536599

Gene Structure 6354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1095900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTGGATGAAAAGAGAGGACTTGCAGCCCGTTTTCTCGTTCAAGCTTCATGGAGCTTACAACATGATGGCAAGGCTTCCGAGGGAGCAATTAGATCGTGGGTTTATTTGCTCTTCAGCCAGAAACCATGCCCAGGGTGTTGCCTTGGCTACTAAGAATTTGAATTGCAGTGCCGTGATTACAATGCCGGTCACCACACCAGAGATTAAGTGGAAGTCGGTTGAGAGGTTGGGTGCCATGGTTGTTCTTATAGGGGATTCATATACGATGAGGCTCAAGCTTATGCTAAGAAGCGGGCGAAAAAGGAGGGAAGGAACTTTGGTTGCTCCAAAGGTAAAGATTATTGGTGTGGAGCCCTTTGATGCAAATGAAATGGCGTTGTCACTACATCATGGCCGTGAAAGAGTTCTTGTTAGCCGTGATGCTAACTGCGGCTCAATAAAGGATATGTTTGAGGAAAGAAGGGGCATTTTAAAACCAGCGGGTGCACTTTCTCTTGCTGATGCTGAAGCTTATTGCAAGTATTATGGAGCAACAACATGTTGTTGCAGGAAGTATGATGCTCGCAGGAAGATTGCAGGAAGGAGCAGCGATAAGACTTGCTGCTACCGAAAACTAGGGTGGCTGCAAGTTTCCCTTGCTGTGGCTTTTCGTACAAAATGTCTTAAAGGAGAAAATGTTGTTGCAATAGCCAACAGGGCAAATATGAACTTTGATAAACTGAGAGTGGTGAGTGAACTTGCTAATGTTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004794 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006549 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009097 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016841 GO:0019752 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00290 ko01100 ko01110 ko01130 ko01200 ko01230 map00260 map00290 map01100 map01110 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP Thr_dehydrat_C

Protein Analysis

252

Amino Acids

28.1

Weight (kDa)

9.81

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	2 - 98	1.1e-18	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10050
fragaria_vesca	FvH4_3g30040 FvH4_6g17350 FvH4_6g17350 FvH4_6g17350
malus_domestica	MD11G1153900.v1.1 MD12G1101800.v1.1 MD14G1095900.v1.1
prunus_persica	Prupe.1G149200_v2.0.a1 Prupe.6G116600_v2.0.a1 Prupe.7G044100_v2.0.a1 Prupe.7G122000_v2.0.a1
pyrus_communis	pycom11g12560 pycom11g12570 pycom12g10020
rosa_chinensis	RchiOBHm_Chr3g0471501 RchiOBHm_Chr4g0394271 RchiOBHm_Chr5g0055901
rosa_laevigata	RLG00000009710 RLG00000024173 RLG00000035019 RLG00000035020
rosa_multiflora	Rmu_co8179734.1_g000001 Rmu_sc0006582.1_g000005 Rmu_sc0006749.1_g000006
rosa_roxburghii	Rroxscaffold_1G00024450 Rroxscaffold_1G00024460 Rroxscaffold_6G00409900
rosa_rugosa	Rorug03G0118100 Rorug03G0118200 Rorug03G0118200 Rorug03G0118200 Rorug03G0368200.1 Rorug05G0295400
rosa_samantha	Rh3AG168100 Rh3BG193600 Rh3CG184100 Rh3DG181900 Rh4AG051200 Rh4BG048200 Rh4BG048400 Rh4CG055000 Rh4DG048100 Rh5AG366800 Rh5BG376900 Rh5CG400200 Rh5DG390400 Rh6BG174900
rosa_wichuraiana	Rw3G015840 Rw4G004080 Rw5G034380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	233
AciI	CCGC	3 cut(s)	294, 432, 482
AcoI	YGGCCR	1 cut(s)	394
AcsI	RAATTY	1 cut(s)	157
AcuI	CTGAAG	2 cut(s)	99, 528
AfaI	GTAC	1 cut(s)	655
AfiI	CCNNNNNNNGG	2 cut(s)	133, 643
AflIII	ACRYGT	1 cut(s)	539
AgsI	TTSAA	2 cut(s)	43, 163
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	4 cut(s)	46, 56, 280, 512
AluI	AGCT	4 cut(s)	46, 56, 280, 512
Alw21I	GWGCWC	1 cut(s)	490
Alw44I	GTGCAC	1 cut(s)	486
AoxI	GGCC	1 cut(s)	394
ApaLI	GTGCAC	1 cut(s)	486
ApeKI	GCWGC	4 cut(s)	25, 588, 603, 625
ApoI	RAATTY	1 cut(s)	157
Asp700I	GAANNNNTTC	1 cut(s)	405
AsuHPI	GGTGA	2 cut(s)	184, 742
BaeGI	GKGCMC	1 cut(s)	490
BanI	GGYRCC	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	490
BbvI	GCAGC	4 cut(s)	37, 590, 600, 612
BccI	CCATC	1 cut(s)	61
BceAI	ACGGC	3 cut(s)	158, 381, 402
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BciT130I	CCWGG	1 cut(s)	134
BfaI	CTAG	1 cut(s)	617
BglI	GCCNNNNNGGC	1 cut(s)	698
BisI	GCNGC	5 cut(s)	26, 433, 589, 604, 626
BlsI	GCNGC	5 cut(s)	27, 434, 590, 605, 627
Bme1390I	CCNGG	1 cut(s)	134
BmiI	GGNNCC	2 cut(s)	235, 354
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	4 cut(s)	352, 412, 493, 550
BpuEI	CTTGAG	1 cut(s)	260
BsaJI	CCNNGG	5 cut(s)	80, 132, 133, 144, 237
BsaXI	ACNNNNNCTCC	2 cut(s)	663, 693
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 643
Bse118I	RCCGGY	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	5 cut(s)	80, 132, 133, 144, 237
BseGI	GGATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	2 cut(s)	133, 643
BseMII	CTCAG	1 cut(s)	713
BseSI	GKGCMC	1 cut(s)	490
BseXI	GCAGC	4 cut(s)	37, 590, 600, 612
BshFI	GGCC	1 cut(s)	396
BshNI	GGYRCC	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	490
BsiSI	CCGG	1 cut(s)	188
BslI	CCNNNNNNNGG	2 cut(s)	133, 643
BsnI	GGCC	1 cut(s)	396
Bsp1286I	GDGCHC	2 cut(s)	357, 490
Bsp143I	GATC	1 cut(s)	94
Bsp19I	CCATGG	1 cut(s)	237
BspACI	CCGC	3 cut(s)	294, 432, 482
BspANI	GGCC	1 cut(s)	396
BspCNI	CTCAG	1 cut(s)	714
BspLI	GGNNCC	2 cut(s)	235, 354
BspQI	GCTCTTC	1 cut(s)	118
BspT107I	GGYRCC	1 cut(s)	233
BsrFI	RCCGGY	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	5 cut(s)	80, 132, 133, 144, 237
BssMI	GATC	1 cut(s)	94
BssT1I	CCWWGG	2 cut(s)	144, 237
Bst2UI	CCWGG	1 cut(s)	134
Bst6I	CTCTTC	1 cut(s)	118
BstC8I	GCNNGC	2 cut(s)	296, 565
BstDEI	CTNAG	3 cut(s)	153, 287, 722
BstDSI	CCRYGG	1 cut(s)	237
BstEII	GGTNACC	1 cut(s)	190
BstF5I	GGATG	1 cut(s)	12
BstKTI	GATC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	1 cut(s)	698
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	1 cut(s)	543
BstPI	GGTNACC	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	132
BstSLI	GKGCMC	1 cut(s)	490
BstV1I	GCAGC	4 cut(s)	37, 590, 600, 612
BsuRI	GGCC	1 cut(s)	396
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	12
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	175
Cac8I	GCNNGC	2 cut(s)	296, 565
Cfr10I	RCCGGY	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	654
CviAII	CATG	6 cut(s)	50, 64, 128, 238, 392, 540
CviQI	GTAC	1 cut(s)	654
DdeI	CTNAG	3 cut(s)	153, 287, 722
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
DraI	TTTAAA	1 cut(s)	474
EaeI	YGGCCR	1 cut(s)	394
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco130I	CCWWGG	2 cut(s)	144, 237
Eco24I	GRGCYC	1 cut(s)	357
Eco57I	CTGAAG	2 cut(s)	99, 528
Eco91I	GGTNACC	1 cut(s)	190
EcoO65I	GGTNACC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	132
EcoT14I	CCWWGG	2 cut(s)	144, 237
EcoT38I	GRGCYC	1 cut(s)	357
ErhI	CCWWGG	2 cut(s)	144, 237
FaeI	CATG	6 cut(s)	53, 67, 131, 241, 395, 543
FalI	AAGNNNNNCTT	2 cut(s)	621, 653
FatI	CATG	6 cut(s)	49, 63, 127, 237, 391, 539
FauI	CCCGC	2 cut(s)	287, 475
Fnu4HI	GCNGC	5 cut(s)	26, 433, 589, 604, 626
FokI	GGATG	1 cut(s)	19
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	5 cut(s)	26, 433, 589, 604, 626
FspBI	CTAG	1 cut(s)	617
GluI	GCNGC	5 cut(s)	26, 433, 589, 604, 626
HaeIII	GGCC	1 cut(s)	396
HapII	CCGG	1 cut(s)	188
Hin1II	CATG	6 cut(s)	53, 67, 131, 241, 395, 543
HindIII	AAGCTT	3 cut(s)	44, 278, 510
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	2 cut(s)	184, 742
Hpy166II	GTNNAC	2 cut(s)	488, 737
Hpy188I	TCNGA	1 cut(s)	81
Hpy8I	GTNNAC	2 cut(s)	488, 737
HpyAV	CCTTC	3 cut(s)	305, 456, 576
HpyCH4V	TGCA	9 cut(s)	25, 168, 365, 488, 519, 549, 578, 628, 686
HpyF10VI	GCNNNNNNNGC	1 cut(s)	698
HpyF3I	CTNAG	3 cut(s)	153, 287, 722
Hsp92II	CATG	6 cut(s)	53, 67, 131, 241, 395, 543
Kzo9I	GATC	1 cut(s)	94
LguI	GCTCTTC	1 cut(s)	118
LmnI	GCTCC	6 cut(s)	53, 85, 331, 352, 530, 585
Lsp1109I	GCAGC	4 cut(s)	37, 590, 600, 612
LweI	GCATC	4 cut(s)	352, 412, 493, 550
MaeI	CTAG	1 cut(s)	617
MaeIII	GTNAC	2 cut(s)	190, 381
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	2 cut(s)	105, 583
MhlI	GDGCHC	2 cut(s)	357, 490
MluCI	AATT	3 cut(s)	89, 157, 163
MnlI	CCTC	6 cut(s)	10, 75, 219, 264, 300, 448
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	3 cut(s)	207, 473, 666
MslI	CAYNNNNRTG	1 cut(s)	396
MspA1I	CMGCKG	1 cut(s)	482
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	698
NcoI	CCATGG	1 cut(s)	237
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	6 cut(s)	53, 67, 131, 241, 395, 543
NlaIV	GGNNCC	2 cut(s)	235, 354
NmuCI	GTSAC	2 cut(s)	190, 381
NspI	RCATGY	1 cut(s)	543
PasI	CCCWGGG	1 cut(s)	133
PciI	ACATGT	1 cut(s)	539
PciSI	GCTCTTC	1 cut(s)	118
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	257
PkrI	GCNGC	5 cut(s)	27, 434, 590, 605, 627
PscI	ACATGT	1 cut(s)	539
Psp6I	CCWGG	1 cut(s)	132
PspEI	GGTNACC	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	2 cut(s)	235, 354
RsaI	GTAC	1 cut(s)	655
RsaNI	GTAC	1 cut(s)	654
RseI	CAYNNNNRTG	1 cut(s)	396
SapI	GCTCTTC	1 cut(s)	118
SaqAI	TTAA	3 cut(s)	207, 473, 666
SatI	GCNGC	5 cut(s)	26, 433, 589, 604, 626
Sau3AI	GATC	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	134
SduI	GDGCHC	2 cut(s)	357, 490
SetI	ASST	6 cut(s)	48, 58, 230, 282, 336, 514
SfaNI	GCATC	4 cut(s)	352, 412, 493, 550
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	3 cut(s)	89, 157, 163
SsiI	CCGC	3 cut(s)	294, 432, 482
SspMI	CTAG	1 cut(s)	617
StyD4I	CCNGG	1 cut(s)	132
StyI	CCWWGG	2 cut(s)	144, 237
TasI	AATT	3 cut(s)	89, 157, 163
TauI	GCSGC	1 cut(s)	435
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	3 cut(s)	207, 473, 666
Tru9I	TTAA	3 cut(s)	207, 473, 666
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	2 cut(s)	190, 381
TseI	GCWGC	4 cut(s)	25, 588, 603, 625
Tsp45I	GTSAC	2 cut(s)	190, 381
TspDTI	ATGAA	5 cut(s)	23, 38, 249, 384, 722
TspRI	CASTG	1 cut(s)	175
VneI	GTGCAC	1 cut(s)	486
XapI	RAATTY	1 cut(s)	157
XceI	RCATGY	1 cut(s)	543
XcmI	CCANNNNNNNNNTGG	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.