Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001514

Physical Location & Seq

Genomic Coordinates Forward (+)

9856162 .. 9857359

Gene Structure 1198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36677

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGTATTGTAGTACAGTAGTACACAATAGGTGTAGTACGATTATAATCTGTTTATATACACCACAGAATGGGTGTAATATCATATCAGAAAATTATTTTCTCAATCGTGTCTTATTTGACTCTTTTGATCACCCAGATATTATTATGGGTCAGGGAACAGTTGGAATGGAGGTTATGCGTCAAACAAAAGAGCCATTGCATGCAATTTTTGTGCCGGTGGGGGGTGGTGGCCTAATAGCTGGTATTGCTGCAAACGTTAAGAGGCTGTCTCCAGAGGTAAAGATTATTGGTGTGGAGCCCTCGGATGCGAATGCAATGGCATTATCCTTGCATCACGGAGAGAGAATAATGTTGGACCAAGTTGGAGGTTTTGCAGATGGTGTAGCAGTGAAAGAGGTGGGTGAAGAAACCTTTCGGATATGCAAAGAATTGATAGATGGTGTAGTTCTGGTGAGTCGTGACGCCATCTGTGGTTCAATAAAGGATATGTTTGAGGAGACTAGAAGCATTTTAGAACCAGCAGGTGCTCTTGCTCTTGCTGGAGCTGAAGCATACTGCAAGTATTATGGTCTTAAAGGAGAAAATGTTGTTGCAATTACCAGTGGTGCAAATATGAACTTTGATAAACTGAGAGTGGTGACTGAACTTGCAAATGTTGGTCGGCAACAAGAGGCTGTACTCGCAACAGTTATGCCAGAGGTGCCTGGGAGCTTTAAACATTACTATATCTCTGATAAAAAGGCTGTCGTACTGTACAGTGTTGGTGTGCACACAGCTTCTGAACTTGAAGCAATGCAAGAGCGCATGGAGTCTTCTCAACTCAAAACGATCAATCTCACGAAAAGTGACGTGGTTAAAGATCACTTGCGTTGCTTGATGGGGGGCAGAATAAATGTTGAAAATGAGGTTCTTTGTCGCTTTGTCTTCCCAGAAAGGCCTGGTGCTTTGATGAAGTTCTTGGACACCTTTAGTCCACGTTGGAATATTAGTTTGTTCCACTACCGCGGACAGGGTGAAACTGGAGCAAATGTCTTGGTTGGAATCCAAGTTTCCAAGAGCGAGATTGATGAGTTCCATTCTCGTGCCAATTCACTTGGGTATGACTATGTAGTAGTGACCAATGATACAGACTTCGAGCTTTTGATGCATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004794 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006549 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009097 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016841 GO:0019752 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00290 ko01100 ko01110 ko01130 ko01200 ko01230 map00260 map00290 map01100 map01110 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP Thr_dehydrat_C

Protein Analysis

384

Amino Acids

42.21

Weight (kDa)

5.43

Isoelectric Point (pI)

35.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	36 - 202	1.2e-36	Pyridoxal-phosphate dependent enzyme
Thr_dehydrat_C	PF00585	294 - 380	1.6e-24	C-terminal regulatory domain of Threonine dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10050
fragaria_vesca	FvH4_3g30040 FvH4_6g17350 FvH4_6g17350 FvH4_6g17350
malus_domestica	MD11G1153900.v1.1 MD12G1101800.v1.1 MD14G1095900.v1.1
prunus_persica	Prupe.1G149200_v2.0.a1 Prupe.6G116600_v2.0.a1 Prupe.7G044100_v2.0.a1 Prupe.7G122000_v2.0.a1
pyrus_communis	pycom11g12560 pycom11g12570 pycom12g10020
rosa_chinensis	RchiOBHm_Chr3g0471501 RchiOBHm_Chr4g0394271 RchiOBHm_Chr5g0055901
rosa_laevigata	RLG00000009710 RLG00000024173 RLG00000035019 RLG00000035020
rosa_multiflora	Rmu_co8179734.1_g000001 Rmu_sc0006582.1_g000005 Rmu_sc0006749.1_g000006
rosa_roxburghii	Rroxscaffold_1G00024450 Rroxscaffold_1G00024460 Rroxscaffold_6G00409900
rosa_rugosa	Rorug03G0118100 Rorug03G0118200 Rorug03G0118200 Rorug03G0118200 Rorug03G0368200.1 Rorug05G0295400
rosa_samantha	Rh3AG168100 Rh3BG193600 Rh3CG184100 Rh3DG181900 Rh4AG051200 Rh4BG048200 Rh4BG048400 Rh4CG055000 Rh4DG048100 Rh5AG366800 Rh5BG376900 Rh5CG400200 Rh5DG390400 Rh6BG174900
rosa_wichuraiana	Rw3G015840 Rw4G004080 Rw5G034380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
AarI	CACCTGC	1 cut(s)	512
Acc36I	ACCTGC	1 cut(s)	512
AccB1I	GGYRCC	1 cut(s)	700
AccB7I	CCANNNNNTGG	1 cut(s)	68
AccII	CGCG	1 cut(s)	1005
AciI	CCGC	2 cut(s)	1003, 1005
AclI	AACGTT	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	567
AcyI	GRCGYC	1 cut(s)	462
AfaI	GTAC	6 cut(s)	13, 21, 37, 678, 750, 755
AfiI	CCNNNNNNNGG	3 cut(s)	68, 221, 1009
AgsI	TTSAA	3 cut(s)	477, 788, 899
AjiI	CACGTC	1 cut(s)	850
AjnI	CCWGG	2 cut(s)	703, 937
AluBI	AGCT	5 cut(s)	239, 545, 711, 776, 1138
AluI	AGCT	5 cut(s)	239, 545, 711, 776, 1138
Alw21I	GWGCWC	2 cut(s)	529, 771
Alw26I	GTCTC	2 cut(s)	273, 491
Alw44I	GTGCAC	1 cut(s)	767
AlwNI	CAGNNNCTG	1 cut(s)	779
AoxI	GGCC	2 cut(s)	229, 935
ApaLI	GTGCAC	1 cut(s)	767
ApeKI	GCWGC	1 cut(s)	248
Asp700I	GAANNNNTTC	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	804
AspS9I	GGNCC	1 cut(s)	355
AsuHPI	GGTGA	5 cut(s)	122, 413, 463, 649, 1025
AvaII	GGWCC	1 cut(s)	355
BaeGI	GKGCMC	1 cut(s)	771
BanI	GGYRCC	1 cut(s)	700
BanII	GRGCYC	1 cut(s)	300
BauI	CACGAG	1 cut(s)	1080
BbsI	GAAGAC	2 cut(s)	804, 916
Bbv12I	GWGCWC	2 cut(s)	529, 771
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	4 cut(s)	371, 431, 473, 871
BciT130I	CCWGG	2 cut(s)	705, 939
BclI	TGATCA	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	273, 491
BfaI	CTAG	1 cut(s)	501
BfuAI	ACCTGC	1 cut(s)	512
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	2 cut(s)	705, 939
Bme18I	GGWCC	1 cut(s)	355
BmgBI	CACGTC	1 cut(s)	850
BmgT120I	GGNCC	1 cut(s)	355
BmiI	GGNNCC	2 cut(s)	297, 702
BmrFI	CCNGG	2 cut(s)	705, 939
BmsI	GCATC	3 cut(s)	295, 340, 1134
BpiI	GAAGAC	2 cut(s)	804, 916
BplI	GAGNNNNNCTC	2 cut(s)	253, 285
BpmI	CTGGAG	3 cut(s)	255, 561, 1041
BsaBI	GATNNNNATC	1 cut(s)	44
BsaHI	GRCGYC	1 cut(s)	462
BsaJI	CCNNGG	3 cut(s)	300, 704, 1003
BsaXI	ACNNNNNCTCC	4 cut(s)	570, 600, 1014, 1044
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 221, 1009
Bse118I	RCCGGY	1 cut(s)	214
Bse1I	ACTGG	2 cut(s)	600, 1024
Bse3DI	GCAATG	3 cut(s)	194, 321, 798
Bse8I	GATNNNNATC	1 cut(s)	44
BseBI	CCWGG	2 cut(s)	705, 939
BseDI	CCNNGG	3 cut(s)	300, 704, 1003
BseGI	GGATG	1 cut(s)	310
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	3 cut(s)	68, 221, 1009
BseMI	GCAATG	3 cut(s)	194, 321, 798
BseMII	CTCAG	1 cut(s)	620
BseNI	ACTGG	2 cut(s)	600, 1024
BseRI	GAGGAG	1 cut(s)	509
BseSI	GKGCMC	1 cut(s)	771
BseXI	GCAGC	1 cut(s)	235
Bsh1236I	CGCG	1 cut(s)	1005
BshFI	GGCC	2 cut(s)	231, 937
BshNI	GGYRCC	1 cut(s)	700
BsiHKAI	GWGCWC	2 cut(s)	529, 771
BsiSI	CCGG	1 cut(s)	215
BslI	CCNNNNNNNGG	3 cut(s)	68, 221, 1009
BsmAI	GTCTC	2 cut(s)	273, 491
BsmI	GAATGC	2 cut(s)	316, 1147
BsnI	GGCC	2 cut(s)	231, 937
Bsp1286I	GDGCHC	3 cut(s)	300, 529, 771
Bsp1407I	TGTACA	1 cut(s)	753
Bsp143I	GATC	3 cut(s)	127, 828, 859
BspACI	CCGC	2 cut(s)	1003, 1005
BspANI	GGCC	2 cut(s)	231, 937
BspCNI	CTCAG	1 cut(s)	621
BspFNI	CGCG	1 cut(s)	1005
BspLI	GGNNCC	2 cut(s)	297, 702
BspMI	ACCTGC	1 cut(s)	512
BspT107I	GGYRCC	1 cut(s)	700
BsrDI	GCAATG	3 cut(s)	194, 321, 798
BsrFI	RCCGGY	1 cut(s)	214
BsrGI	TGTACA	1 cut(s)	753
BsrI	ACTGG	2 cut(s)	600, 1024
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	3 cut(s)	300, 704, 1003
BssMI	GATC	3 cut(s)	127, 828, 859
BssNI	GRCGYC	1 cut(s)	462
BssSI	CACGAG	1 cut(s)	1080
Bst2BI	CACGAG	1 cut(s)	1080
Bst2UI	CCWGG	2 cut(s)	705, 939
Bst4CI	ACNGT	5 cut(s)	16, 160, 688, 753, 758
BstACI	GRCGYC	1 cut(s)	462
BstAUI	TGTACA	1 cut(s)	753
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	629
BstDSI	CCRYGG	1 cut(s)	1003
BstF5I	GGATG	1 cut(s)	310
BstFNI	CGCG	1 cut(s)	1005
BstHHI	GCGC	1 cut(s)	804
BstKTI	GATC	3 cut(s)	130, 831, 862
BstMAI	GTCTC	2 cut(s)	273, 491
BstMBI	GATC	3 cut(s)	127, 828, 859
BstMWI	GCNNNNNNNGC	4 cut(s)	245, 680, 700, 1144
BstNI	CCWGG	2 cut(s)	705, 939
BstNSI	RCATGY	1 cut(s)	203
BstSCI	CCNGG	2 cut(s)	703, 937
BstSLI	GKGCMC	1 cut(s)	771
BstUI	CGCG	1 cut(s)	1005
BstV1I	GCAGC	1 cut(s)	235
BstV2I	GAAGAC	2 cut(s)	804, 916
BsuRI	GGCC	2 cut(s)	231, 937
BtgI	CCRYGG	1 cut(s)	1003
BtrI	CACGTC	1 cut(s)	850
BtsCI	GGATG	1 cut(s)	310
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	3 cut(s)	393, 607, 763
BveI	ACCTGC	1 cut(s)	512
Cac8I	GCNNGC	1 cut(s)	201
CaiI	CAGNNNCTG	1 cut(s)	779
CfoI	GCGC	1 cut(s)	804
Cfr10I	RCCGGY	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	355
Cfr42I	CCGCGG	1 cut(s)	1006
CseI	GACGC	2 cut(s)	167, 470
Csp6I	GTAC	6 cut(s)	12, 20, 36, 677, 749, 754
CviAII	CATG	2 cut(s)	200, 805
CviQI	GTAC	6 cut(s)	12, 20, 36, 677, 749, 754
DdeI	CTNAG	1 cut(s)	629
DpnI	GATC	3 cut(s)	129, 830, 861
DpnII	GATC	3 cut(s)	127, 828, 859
DraI	TTTAAA	1 cut(s)	715
Eco147I	AGGCCT	1 cut(s)	937
Eco24I	GRGCYC	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	567
EcoRII	CCWGG	2 cut(s)	703, 937
EcoT22I	ATGCAT	1 cut(s)	1149
EcoT38I	GRGCYC	1 cut(s)	300
FaeI	CATG	2 cut(s)	203, 808
FatI	CATG	2 cut(s)	199, 804
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	1 cut(s)	317
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	1 cut(s)	501
GlaI	GCGC	1 cut(s)	803
GluI	GCNGC	1 cut(s)	249
GsuI	CTGGAG	3 cut(s)	255, 561, 1041
HaeIII	GGCC	2 cut(s)	231, 937
HapII	CCGG	1 cut(s)	215
HgaI	GACGC	2 cut(s)	167, 470
HhaI	GCGC	1 cut(s)	804
Hin1I	GRCGYC	1 cut(s)	462
Hin1II	CATG	2 cut(s)	203, 808
Hin6I	GCGC	1 cut(s)	802
HinP1I	GCGC	1 cut(s)	802
HinfI	GANTC	4 cut(s)	119, 454, 809, 1041
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	5 cut(s)	122, 413, 463, 649, 1025
Hpy166II	GTNNAC	3 cut(s)	22, 769, 974
Hpy188I	TCNGA	5 cut(s)	88, 304, 417, 733, 781
Hpy188III	TCNNGA	3 cut(s)	272, 458, 838
Hpy8I	GTNNAC	3 cut(s)	22, 769, 974
HpyCH4III	ACNGT	5 cut(s)	16, 160, 688, 753, 758
HpyCH4IV	ACGT	3 cut(s)	255, 849, 976
HpyF10VI	GCNNNNNNNGC	4 cut(s)	245, 680, 700, 1144
HpyF3I	CTNAG	1 cut(s)	629
HpySE526I	ACGT	3 cut(s)	255, 849, 976
Hsp92I	GRCGYC	1 cut(s)	462
Hsp92II	CATG	2 cut(s)	203, 808
HspAI	GCGC	1 cut(s)	802
Ksp22I	TGATCA	1 cut(s)	127
KspI	CCGCGG	1 cut(s)	1006
Kzo9I	GATC	3 cut(s)	127, 828, 859
LmnI	GCTCC	4 cut(s)	295, 542, 708, 1022
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	3 cut(s)	295, 340, 1134
MaeI	CTAG	1 cut(s)	501
MaeII	ACGT	3 cut(s)	255, 849, 976
MaeIII	GTNAC	4 cut(s)	458, 637, 845, 1114
MalI	GATC	3 cut(s)	129, 830, 861
MboI	GATC	3 cut(s)	127, 828, 859
MboII	GAAGA	3 cut(s)	416, 804, 916
MhlI	GDGCHC	3 cut(s)	300, 529, 771
MluCI	AATT	5 cut(s)	91, 204, 428, 594, 1087
MlyI	GAGTC	3 cut(s)	113, 463, 818
MmeI	TCCRAC	5 cut(s)	142, 333, 343, 959, 1018
Mph1103I	ATGCAT	1 cut(s)	1149
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	4 cut(s)	258, 573, 714, 855
MslI	CAYNNNNRTG	1 cut(s)	1080
MspA1I	CMGCKG	1 cut(s)	1005
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	2 cut(s)	705, 939
Mva1269I	GAATGC	2 cut(s)	316, 1147
MvaI	CCWGG	2 cut(s)	705, 939
MvnI	CGCG	1 cut(s)	1005
MwoI	GCNNNNNNNGC	4 cut(s)	245, 680, 700, 1144
NdeII	GATC	3 cut(s)	127, 828, 859
NlaIII	CATG	2 cut(s)	203, 808
NlaIV	GGNNCC	2 cut(s)	297, 702
NmuCI	GTSAC	4 cut(s)	458, 637, 845, 1114
NsiI	ATGCAT	1 cut(s)	1149
NspI	RCATGY	1 cut(s)	203
PaeI	GCATGC	1 cut(s)	203
PaqCI	CACCTGC	1 cut(s)	512
PceI	AGGCCT	1 cut(s)	937
PctI	GAATGC	2 cut(s)	316, 1147
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	1041
PflMI	CCANNNNNTGG	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	3 cut(s)	113, 462, 817
PpsI	GAGTC	3 cut(s)	113, 462, 817
PsiI	TTATAA	1 cut(s)	44
Psp1406I	AACGTT	1 cut(s)	255
Psp6I	CCWGG	2 cut(s)	703, 937
PspGI	CCWGG	2 cut(s)	703, 937
PspN4I	GGNNCC	2 cut(s)	297, 702
PspPI	GGNCC	1 cut(s)	355
PstNI	CAGNNNCTG	1 cut(s)	779
RsaI	GTAC	6 cut(s)	13, 21, 37, 678, 750, 755
RsaNI	GTAC	6 cut(s)	12, 20, 36, 677, 749, 754
RseI	CAYNNNNRTG	1 cut(s)	1080
SacII	CCGCGG	1 cut(s)	1006
SaqAI	TTAA	4 cut(s)	258, 573, 714, 855
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	3 cut(s)	127, 828, 859
Sau96I	GGNCC	1 cut(s)	355
SchI	GAGTC	3 cut(s)	113, 463, 818
ScrFI	CCNGG	2 cut(s)	705, 939
SduI	GDGCHC	3 cut(s)	300, 529, 771
SfaNI	GCATC	3 cut(s)	295, 340, 1134
Sfr303I	CCGCGG	1 cut(s)	1006
SgrBI	CCGCGG	1 cut(s)	1006
SinI	GGWCC	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	1080
SphI	GCATGC	1 cut(s)	203
Sse9I	AATT	5 cut(s)	91, 204, 428, 594, 1087
SseBI	AGGCCT	1 cut(s)	937
SsiI	CCGC	2 cut(s)	1003, 1005
SspI	AATATT	1 cut(s)	985
SspMI	CTAG	1 cut(s)	501
StuI	AGGCCT	1 cut(s)	937
StyD4I	CCNGG	2 cut(s)	703, 937
TaaI	ACNGT	5 cut(s)	16, 160, 688, 753, 758
TaiI	ACGT	3 cut(s)	258, 852, 979
TaqI	TCGA	1 cut(s)	1134
TasI	AATT	5 cut(s)	91, 204, 428, 594, 1087
TatI	WGTACW	4 cut(s)	11, 19, 676, 753
TfiI	GAWTC	1 cut(s)	1041
Tru1I	TTAA	4 cut(s)	258, 573, 714, 855
Tru9I	TTAA	4 cut(s)	258, 573, 714, 855
TscAI	CASTG	3 cut(s)	393, 607, 763
TseFI	GTSAC	4 cut(s)	458, 637, 845, 1114
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	4 cut(s)	458, 637, 845, 1114
TspDTI	ATGAA	3 cut(s)	629, 965, 1140
TspGWI	ACGGA	1 cut(s)	351
TspRI	CASTG	3 cut(s)	393, 607, 763
Van91I	CCANNNNNTGG	1 cut(s)	68
VneI	GTGCAC	1 cut(s)	767
VpaK11BI	GGWCC	1 cut(s)	355
XceI	RCATGY	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	1 cut(s)	501
Zsp2I	ATGCAT	1 cut(s)	1149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.