Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001514

Physical Location & Seq

Genomic Coordinates Forward (+)

10745398 .. 10746108

Gene Structure 711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG051200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCTTGAGGAGACTAGAAGCATTTTAGAACCAGCAGGTGCTCTTGCTCTTGCTGGAGCTGAAGCATACTACAAGTATTATGGTCTTAAAGGAGAAAATGTTGTTGCAATTACCAGTGGTACAAATATGAACTTTGATAAACTGAGAGTGGTGACTGAACTTGCAAATGTTGGTCGGCAACAAGAGGCTGTACTCGCAACAGTTATGCCAGAGGTGCCTGGGAGCTTTAAACATTACTGTGAGCTGGTCGGCCCAATGAATATTAGTGAATTCAAATACAGATATAACTCTGATAAAAAAGCTGTCGTACTGTACAGTGTTGGTGTGCACACAGCTTCTGAACTTGAAGTAATGCAAGAGCGCATGGAGTCTTCTCAACTCAAAACGATCAATCTCACGAAAAGTTACTTGGTTAAAGATCACTTGCGTTGCTTGATGGGGGGAAGAATAAATGTTGAAAATGAGGTTCTTTGTCGCTTTGTCTTCCCAGAAAGGCCTGGTGCTTTGATGAAGTTCTTGGACACCTTTAGTCCACGTTGGAATATTAGTTTGTTCCACTACCGCGGACAGGGTGAAACTGGAGCAAATGTCTTGGTTGGAATCCAAGTTTCCAAGAGCGAGATTGATGTGTTCCATTCTCGTGCCAATTCACTTGGGTATGACTATGTAGTAGTGACCAATGATACAGACTTCGAGCTTTTGATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004794 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006549 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009097 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016841 GO:0019752 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00290 ko01100 ko01110 ko01130 ko01200 ko01230 map00260 map00290 map01100 map01110 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP Thr_dehydrat_C

Protein Analysis

236

Amino Acids

26.54

Weight (kDa)

5.9

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thr_dehydrat_C	PF00585	53 - 142	2.6e-21	C-terminal regulatory domain of Threonine dehydratase
Thr_dehydrat_C	PF00585	147 - 233	5.3e-24	C-terminal regulatory domain of Threonine dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10050
fragaria_vesca	FvH4_3g30040 FvH4_6g17350 FvH4_6g17350 FvH4_6g17350
malus_domestica	MD11G1153900.v1.1 MD12G1101800.v1.1 MD14G1095900.v1.1
prunus_persica	Prupe.1G149200_v2.0.a1 Prupe.6G116600_v2.0.a1 Prupe.7G044100_v2.0.a1 Prupe.7G122000_v2.0.a1
pyrus_communis	pycom11g12560 pycom11g12570 pycom12g10020
rosa_chinensis	RchiOBHm_Chr3g0471501 RchiOBHm_Chr4g0394271 RchiOBHm_Chr5g0055901
rosa_laevigata	RLG00000009710 RLG00000024173 RLG00000035019 RLG00000035020
rosa_multiflora	Rmu_co8179734.1_g000001 Rmu_sc0006582.1_g000005 Rmu_sc0006749.1_g000006
rosa_roxburghii	Rroxscaffold_1G00024450 Rroxscaffold_1G00024460 Rroxscaffold_6G00409900
rosa_rugosa	Rorug03G0118100 Rorug03G0118200 Rorug03G0118200 Rorug03G0118200 Rorug03G0368200.1 Rorug05G0295400
rosa_samantha	Rh3AG168100 Rh3BG193600 Rh3CG184100 Rh3DG181900 Rh4AG051200 Rh4BG048200 Rh4BG048400 Rh4CG055000 Rh4DG048100 Rh5AG366800 Rh5BG376900 Rh5CG400200 Rh5DG390400 Rh6BG174900
rosa_wichuraiana	Rw3G015840 Rw4G004080 Rw5G034380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	26
Acc36I	ACCTGC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	214
AccII	CGCG	1 cut(s)	564
AciI	CCGC	2 cut(s)	562, 564
AcsI	RAATTY	1 cut(s)	269
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	4 cut(s)	121, 192, 309, 314
AfiI	CCNNNNNNNGG	1 cut(s)	568
AgsI	TTSAA	3 cut(s)	274, 347, 458
AjnI	CCWGG	2 cut(s)	217, 496
AjuI	GAANNNNNNNTTGG	2 cut(s)	392, 424
AluBI	AGCT	6 cut(s)	59, 225, 244, 302, 335, 697
AluI	AGCT	6 cut(s)	59, 225, 244, 302, 335, 697
Alw21I	GWGCWC	2 cut(s)	43, 330
Alw26I	GTCTC	1 cut(s)	5
Alw44I	GTGCAC	1 cut(s)	326
AlwNI	CAGNNNCTG	1 cut(s)	338
AoxI	GGCC	2 cut(s)	250, 494
ApaLI	GTGCAC	1 cut(s)	326
ApoI	RAATTY	1 cut(s)	269
AspLEI	GCGC	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	2 cut(s)	163, 584
BaeGI	GKGCMC	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	214
BauI	CACGAG	1 cut(s)	639
BbsI	GAAGAC	2 cut(s)	363, 475
Bbv12I	GWGCWC	2 cut(s)	43, 330
BccI	CCATC	1 cut(s)	430
BciT130I	CCWGG	2 cut(s)	219, 498
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	26
Bme1390I	CCNGG	2 cut(s)	219, 498
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	2 cut(s)	219, 498
BmsI	GCATC	1 cut(s)	693
BpiI	GAAGAC	2 cut(s)	363, 475
BpmI	CTGGAG	2 cut(s)	75, 600
BpuEI	CTTGAG	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	218, 562
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 573, 603
Bsc4I	CCNNNNNNNGG	1 cut(s)	568
Bse1I	ACTGG	2 cut(s)	114, 583
BseBI	CCWGG	2 cut(s)	219, 498
BseDI	CCNNGG	2 cut(s)	218, 562
BseLI	CCNNNNNNNGG	1 cut(s)	568
BseMII	CTCAG	1 cut(s)	134
BseNI	ACTGG	2 cut(s)	114, 583
BseRI	GAGGAG	1 cut(s)	23
BseSI	GKGCMC	1 cut(s)	330
Bsh1236I	CGCG	1 cut(s)	564
BshFI	GGCC	2 cut(s)	252, 496
BshNI	GGYRCC	1 cut(s)	214
BsiHKAI	GWGCWC	2 cut(s)	43, 330
BslI	CCNNNNNNNGG	1 cut(s)	568
BsmAI	GTCTC	1 cut(s)	5
BsnI	GGCC	2 cut(s)	252, 496
Bsp1286I	GDGCHC	2 cut(s)	43, 330
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	2 cut(s)	387, 418
BspACI	CCGC	2 cut(s)	562, 564
BspANI	GGCC	2 cut(s)	252, 496
BspCNI	CTCAG	1 cut(s)	135
BspFNI	CGCG	1 cut(s)	564
BspLI	GGNNCC	1 cut(s)	216
BspMI	ACCTGC	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	214
BsrGI	TGTACA	1 cut(s)	312
BsrI	ACTGG	2 cut(s)	114, 583
BssECI	CCNNGG	2 cut(s)	218, 562
BssMI	GATC	2 cut(s)	387, 418
BssSI	CACGAG	1 cut(s)	639
Bst2BI	CACGAG	1 cut(s)	639
Bst2UI	CCWGG	2 cut(s)	219, 498
Bst4CI	ACNGT	4 cut(s)	202, 239, 312, 317
BstAUI	TGTACA	1 cut(s)	312
BstDEI	CTNAG	1 cut(s)	143
BstDSI	CCRYGG	1 cut(s)	562
BstFNI	CGCG	1 cut(s)	564
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	2 cut(s)	390, 421
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	2 cut(s)	387, 418
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 214, 703
BstNI	CCWGG	2 cut(s)	219, 498
BstSCI	CCNGG	2 cut(s)	217, 496
BstSLI	GKGCMC	1 cut(s)	330
BstUI	CGCG	1 cut(s)	564
BstV2I	GAAGAC	2 cut(s)	363, 475
BsuRI	GGCC	2 cut(s)	252, 496
BtgI	CCRYGG	1 cut(s)	562
BtsIMutI	CAGTG	2 cut(s)	121, 322
BveI	ACCTGC	1 cut(s)	26
CaiI	CAGNNNCTG	1 cut(s)	338
CfoI	GCGC	1 cut(s)	363
Cfr13I	GGNCC	1 cut(s)	251
Cfr42I	CCGCGG	1 cut(s)	565
Csp6I	GTAC	4 cut(s)	120, 191, 308, 313
CviAII	CATG	1 cut(s)	364
CviJI	RGCY	9 cut(s)	59, 188, 225, 244, 252, 302, 335, 496, 697
CviKI_1	RGCY	9 cut(s)	59, 188, 225, 244, 252, 302, 335, 496, 697
CviQI	GTAC	4 cut(s)	120, 191, 308, 313
DdeI	CTNAG	1 cut(s)	143
DpnI	GATC	2 cut(s)	389, 420
DpnII	GATC	2 cut(s)	387, 418
DraI	TTTAAA	1 cut(s)	229
Eco147I	AGGCCT	1 cut(s)	496
Eco57I	CTGAAG	1 cut(s)	81
EcoRI	GAATTC	1 cut(s)	269
EcoRII	CCWGG	2 cut(s)	217, 496
EcoT22I	ATGCAT	1 cut(s)	708
FaeI	CATG	1 cut(s)	367
FaiI	YATR	8 cut(s)	67, 81, 128, 206, 285, 365, 660, 666
FatI	CATG	1 cut(s)	363
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	362
GsuI	CTGGAG	2 cut(s)	75, 600
HaeIII	GGCC	2 cut(s)	252, 496
HhaI	GCGC	1 cut(s)	363
Hin1II	CATG	1 cut(s)	367
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HinfI	GANTC	2 cut(s)	368, 600
HphI	GGTGA	2 cut(s)	163, 584
Hpy166II	GTNNAC	2 cut(s)	328, 533
Hpy188I	TCNGA	2 cut(s)	292, 340
Hpy188III	TCNNGA	1 cut(s)	397
Hpy8I	GTNNAC	2 cut(s)	328, 533
HpyCH4III	ACNGT	4 cut(s)	202, 239, 312, 317
HpyCH4IV	ACGT	1 cut(s)	535
HpyCH4V	TGCA	5 cut(s)	107, 164, 328, 355, 706
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 214, 703
HpyF3I	CTNAG	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	535
Hsp92II	CATG	1 cut(s)	367
HspAI	GCGC	1 cut(s)	361
KspI	CCGCGG	1 cut(s)	565
Kzo9I	GATC	2 cut(s)	387, 418
LmnI	GCTCC	3 cut(s)	56, 222, 581
LweI	GCATC	1 cut(s)	693
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	1 cut(s)	535
MaeIII	GTNAC	3 cut(s)	151, 404, 673
MalI	GATC	2 cut(s)	389, 420
MboI	GATC	2 cut(s)	387, 418
MboII	GAAGA	3 cut(s)	363, 456, 475
MhlI	GDGCHC	2 cut(s)	43, 330
MluCI	AATT	3 cut(s)	108, 269, 646
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	2 cut(s)	518, 577
MnlI	CCTC	3 cut(s)	178, 205, 457
Mph1103I	ATGCAT	1 cut(s)	708
MseI	TTAA	3 cut(s)	87, 228, 414
MslI	CAYNNNNRTG	2 cut(s)	237, 639
MspA1I	CMGCKG	1 cut(s)	564
MspR9I	CCNGG	2 cut(s)	219, 498
MvaI	CCWGG	2 cut(s)	219, 498
MvnI	CGCG	1 cut(s)	564
MwoI	GCNNNNNNNGC	3 cut(s)	194, 214, 703
NdeII	GATC	2 cut(s)	387, 418
NlaIII	CATG	1 cut(s)	367
NlaIV	GGNNCC	1 cut(s)	216
NmuCI	GTSAC	2 cut(s)	151, 673
NsiI	ATGCAT	1 cut(s)	708
PaqCI	CACCTGC	1 cut(s)	26
PceI	AGGCCT	1 cut(s)	496
PfeI	GAWTC	1 cut(s)	600
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Psp6I	CCWGG	2 cut(s)	217, 496
PspGI	CCWGG	2 cut(s)	217, 496
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	251
PstNI	CAGNNNCTG	1 cut(s)	338
RsaI	GTAC	4 cut(s)	121, 192, 309, 314
RsaNI	GTAC	4 cut(s)	120, 191, 308, 313
RseI	CAYNNNNRTG	2 cut(s)	237, 639
SacII	CCGCGG	1 cut(s)	565
SaqAI	TTAA	3 cut(s)	87, 228, 414
Sau3AI	GATC	2 cut(s)	387, 418
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	2 cut(s)	219, 498
SduI	GDGCHC	2 cut(s)	43, 330
SfaNI	GCATC	1 cut(s)	693
Sfr303I	CCGCGG	1 cut(s)	565
SgrBI	CCGCGG	1 cut(s)	565
SmiMI	CAYNNNNRTG	2 cut(s)	237, 639
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
Sse9I	AATT	3 cut(s)	108, 269, 646
SseBI	AGGCCT	1 cut(s)	496
SsiI	CCGC	2 cut(s)	562, 564
SspI	AATATT	2 cut(s)	262, 544
SspMI	CTAG	1 cut(s)	15
StuI	AGGCCT	1 cut(s)	496
StyD4I	CCNGG	2 cut(s)	217, 496
TaaI	ACNGT	4 cut(s)	202, 239, 312, 317
TaiI	ACGT	1 cut(s)	538
TaqI	TCGA	1 cut(s)	693
TasI	AATT	3 cut(s)	108, 269, 646
TatI	WGTACW	2 cut(s)	190, 312
TfiI	GAWTC	1 cut(s)	600
Tru1I	TTAA	3 cut(s)	87, 228, 414
Tru9I	TTAA	3 cut(s)	87, 228, 414
TscAI	CASTG	2 cut(s)	121, 322
TseFI	GTSAC	2 cut(s)	151, 673
Tsp45I	GTSAC	2 cut(s)	151, 673
TspDTI	ATGAA	3 cut(s)	143, 272, 524
TspRI	CASTG	2 cut(s)	121, 322
VneI	GTGCAC	1 cut(s)	326
XapI	RAATTY	1 cut(s)	269
XspI	CTAG	1 cut(s)	15
Zsp2I	ATGCAT	1 cut(s)	708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.