Rroxscaffold_1G00024450

Threonine dehydratase biosynthetic

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
30348421 .. 30349295
875 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00024450.1

Sequence Viewer

Length: 204 bp
ATGAAGTTCTTGGATGTTTTCAGTCCCCTTTGGAACATTACCTTGTTCCATTACAGTGGACAGGGTGAAACTGGTGCAAATGCTCTGGTGGGTTTTCAAGTCGCAAGCTCTGAGATTGACAGGTTCAAGGATTTGGCAGATACTTTAGGATATGATTATGCATTTGAGACGAACAATAAAACCTTACAACTGCTATTGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

67

Amino Acids

7.57

Weight (kDa)

4.69

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thr_dehydrat_C PF00585 2 - 66 2.4e-13 C-terminal regulatory domain of Threonine dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 98, 127
AluBI AGCT 1 cut(s) 108
AluI AGCT 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 76
BseGI GGATG 1 cut(s) 19
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 76
BslFI GGGAC 1 cut(s) 9
BsmAI GTCTC 1 cut(s) 161
BsmBI CGTCTC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 103
BsrI ACTGG 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 19
BstMAI GTCTC 1 cut(s) 161
BstXI CCANNNNNNTGG 1 cut(s) 56
BtsCI GGATG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 106
CviJI RGCY 1 cut(s) 108
CviKI_1 RGCY 1 cut(s) 108
DdeI CTNAG 1 cut(s) 111
EcoT22I ATGCAT 1 cut(s) 163
Esp3I CGTCTC 1 cut(s) 161
FaiI YATR 2 cut(s) 153, 159
FaqI GGGAC 1 cut(s) 9
FokI GGATG 1 cut(s) 26
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 1 cut(s) 112
Hpy8I GTNNAC 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 3 cut(s) 77, 161, 199
HpyF3I CTNAG 1 cut(s) 111
LpnPI CCDG 4 cut(s) 47, 57, 71, 106
Mph1103I ATGCAT 1 cut(s) 163
MslI CAYNNNNRTG 1 cut(s) 54
NsiI ATGCAT 1 cut(s) 163
RseI CAYNNNNRTG 1 cut(s) 54
SetI ASST 4 cut(s) 44, 110, 125, 185
SgeI CNNG 9 cut(s) 22, 55, 74, 84, 98, 110, 117, 133, 139
SmiMI CAYNNNNRTG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 56
TscAI CASTG 1 cut(s) 61
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 61
Zsp2I ATGCAT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.