pycom11g12570

Threonine dehydratase biosynthetic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0001514
Physical Location & Seq
Reverse (-)
11475930 .. 11477930
2001 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g12570.1

Sequence Viewer

Length: 642 bp
ATGGAGACTCTCTGCAGCCGGACTCCTTCACCCTCCTCACCTCTGTTCCGTACAAACGTACGGCAGCATGGTTCATCATCAACATCCTTCCCACACCTCATAAAAAATCAATCACCATGCATCACCACTGCTATACTAACAAATCCAGCTGCTGAAGTAATCTCCATCAAACCTTCCAAACTACCACTCAGTCCCTTCAAAACGACCCCGCAGGAGTTGAAGATAGTGGCGCCGGAGACATTACAGTACGACAGTGGGTTTCTTGGAGCAGTGCCTGATAAGTTAGTGGAAGGAGAAGGAAGTAGTGATGATATTCACGATGCCATGAGTTACTTGACAAAGATTTTGACCTCTAAAGTTTATGATGTTGCCATTGAGTCTCCGTTGGACTATGCTTCCAAGCTCTCTGACAAGCTTCATGTTAATATTTGGCTCAAGAGAGAGGACCTACAACCTATTTTCTCCTTTAAAATTCGAGGAGCTTACAATATGATGGCAAAGCTTTCCACAAAACAATTGGCAATGGGTGTTATTTGTTCATCAGCAGGGAATCATGCTCAAGGAGTTGCACTATCAGCACAAAAACTTGGTTGCACTGCTGTGATTATCATGCCCATTACAACTCCTGAAATCAAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00290 ko01100 ko01110 ko01130 ko01200 ko01230 map00260 map00290 map01100 map01110 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP Thr_dehydrat_C

Protein Analysis

214

Amino Acids

23.07

Weight (kDa)

8.62

Isoelectric Point (pI)

51.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 126 - 212 2.3e-25 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 229
AciI CCGC 1 cut(s) 209
AcsI RAATTY 1 cut(s) 471
AcuI CTGAAG 1 cut(s) 174
AcyI GRCGYC 1 cut(s) 230
AfaI GTAC 3 cut(s) 52, 60, 248
AgsI TTSAA 2 cut(s) 199, 220
AleI CACNNNNGTG 1 cut(s) 599
AluBI AGCT 5 cut(s) 149, 403, 415, 482, 502
AluI AGCT 5 cut(s) 149, 403, 415, 482, 502
Alw26I GTCTC 2 cut(s) 230, 384
AlwNI CAGNNNCTG 2 cut(s) 152, 275
ApeKI GCWGC 3 cut(s) 15, 64, 149
ApoI RAATTY 1 cut(s) 471
ArsI GACNNNNNNTTYG 2 cut(s) 328, 360
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 445
AsuHPI GGTGA 4 cut(s) 21, 30, 105, 115
AvaII GGWCC 1 cut(s) 445
BanI GGYRCC 1 cut(s) 229
BbvI GCAGC 3 cut(s) 27, 76, 136
BccI CCATC 2 cut(s) 173, 487
BceAI ACGGC 1 cut(s) 77
BcoDI GTCTC 2 cut(s) 230, 384
BfmI CTRYAG 1 cut(s) 13
BfoI RGCGCY 1 cut(s) 233
BisI GCNGC 3 cut(s) 16, 65, 150
BlsI GCNGC 3 cut(s) 17, 66, 151
Bme18I GGWCC 1 cut(s) 445
BmgT120I GGNCC 1 cut(s) 445
BmiI GGNNCC 1 cut(s) 231
BmsI GCATC 2 cut(s) 129, 310
BpuEI CTTGAG 2 cut(s) 419, 543
BsaHI GRCGYC 1 cut(s) 230
Bse3DI GCAATG 1 cut(s) 528
BseGI GGATG 1 cut(s) 83
BseMI GCAATG 1 cut(s) 528
BseMII CTCAG 1 cut(s) 202
BseRI GAGGAG 2 cut(s) 25, 492
BseXI GCAGC 3 cut(s) 27, 76, 136
BshNI GGYRCC 1 cut(s) 229
BsiSI CCGG 2 cut(s) 19, 233
BsiWI CGTACG 1 cut(s) 58
BslFI GGGAC 1 cut(s) 177
BsmAI GTCTC 2 cut(s) 230, 384
BsmFI GGGAC 1 cut(s) 177
BspACI CCGC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 231
BspMAI CTGCAG 1 cut(s) 17
BspT107I GGYRCC 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 528
BssNI GRCGYC 1 cut(s) 230
Bst4CI ACNGT 2 cut(s) 246, 254
BstACI GRCGYC 1 cut(s) 230
BstDEI CTNAG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 1 cut(s) 232
BstMAI GTCTC 2 cut(s) 230, 384
BstMWI GCNNNNNNNGC 1 cut(s) 575
BstSFI CTRYAG 1 cut(s) 13
BstV1I GCAGC 3 cut(s) 27, 76, 136
BtsCI GGATG 1 cut(s) 83
BtsI GCAGTG 3 cut(s) 126, 276, 594
BtsIMutI CAGTG 4 cut(s) 126, 259, 276, 594
CaiI CAGNNNCTG 2 cut(s) 152, 275
CfoI GCGC 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 445
Csp6I GTAC 3 cut(s) 51, 59, 247
CviAII CATG 6 cut(s) 68, 117, 325, 419, 554, 610
CviJI RGCY 7 cut(s) 18, 149, 403, 415, 433, 482, 502
CviKI_1 RGCY 7 cut(s) 18, 149, 403, 415, 433, 482, 502
CviQI GTAC 3 cut(s) 51, 59, 247
DdeI CTNAG 1 cut(s) 188
DinI GGCGCC 1 cut(s) 231
DraI TTTAAA 1 cut(s) 469
Eco47I GGWCC 1 cut(s) 445
Eco57I CTGAAG 1 cut(s) 174
EcoO109I RGGNCCY 1 cut(s) 445
EcoT22I ATGCAT 1 cut(s) 122
EgeI GGCGCC 1 cut(s) 231
EheI GGCGCC 1 cut(s) 231
FaeI CATG 6 cut(s) 71, 120, 328, 422, 557, 613
FaqI GGGAC 1 cut(s) 177
FatI CATG 6 cut(s) 67, 116, 324, 418, 553, 609
FauI CCCGC 1 cut(s) 216
Fnu4HI GCNGC 3 cut(s) 16, 65, 150
FokI GGATG 1 cut(s) 70
Fsp4HI GCNGC 3 cut(s) 16, 65, 150
GlaI GCGC 1 cut(s) 231
GluI GCNGC 3 cut(s) 16, 65, 150
HaeII RGCGCY 1 cut(s) 233
HapII CCGG 2 cut(s) 19, 233
HhaI GCGC 1 cut(s) 232
Hin1I GRCGYC 1 cut(s) 230
Hin1II CATG 6 cut(s) 71, 120, 328, 422, 557, 613
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HindIII AAGCTT 2 cut(s) 413, 500
HinfI GANTC 4 cut(s) 7, 22, 377, 550
HpaII CCGG 2 cut(s) 19, 233
HphI GGTGA 4 cut(s) 21, 30, 105, 115
Hpy188I TCNGA 1 cut(s) 409
Hpy188III TCNNGA 3 cut(s) 317, 436, 626
HpyAV CCTTC 6 cut(s) 36, 97, 183, 205, 284, 290
HpyCH4III ACNGT 2 cut(s) 246, 254
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 4 cut(s) 15, 120, 569, 594
HpyF10VI GCNNNNNNNGC 1 cut(s) 575
HpyF3I CTNAG 1 cut(s) 188
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 230
Hsp92II CATG 6 cut(s) 71, 120, 328, 422, 557, 613
HspAI GCGC 1 cut(s) 230
KasI GGCGCC 1 cut(s) 229
LmnI GCTCC 2 cut(s) 266, 479
LpnPI CCDG 6 cut(s) 32, 159, 197, 246, 288, 531
Lsp1109I GCAGC 3 cut(s) 27, 76, 136
LweI GCATC 2 cut(s) 129, 310
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 329
MboII GAAGA 1 cut(s) 232
MfeI CAATTG 1 cut(s) 515
MluCI AATT 2 cut(s) 471, 515
Mly113I GGCGCC 1 cut(s) 230
MlyI GAGTC 2 cut(s) 16, 386
MmeI TCCRAC 1 cut(s) 366
MnlI CCTC 7 cut(s) 43, 46, 51, 107, 361, 436, 470
Mph1103I ATGCAT 1 cut(s) 122
MseI TTAA 2 cut(s) 423, 468
MslI CAYNNNNRTG 1 cut(s) 599
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 2 cut(s) 19, 233
MunI CAATTG 1 cut(s) 515
MwoI GCNNNNNNNGC 1 cut(s) 575
NarI GGCGCC 1 cut(s) 230
NlaIII CATG 6 cut(s) 71, 120, 328, 422, 557, 613
NlaIV GGNNCC 1 cut(s) 231
NsiI ATGCAT 1 cut(s) 122
OliI CACNNNNGTG 1 cut(s) 599
PfeI GAWTC 1 cut(s) 550
Pfl23II CGTACG 1 cut(s) 58
PkrI GCNGC 3 cut(s) 17, 66, 151
PleI GAGTC 2 cut(s) 16, 385
PluTI GGCGCC 1 cut(s) 233
PpsI GAGTC 2 cut(s) 16, 385
PpuMI RGGWCCY 1 cut(s) 445
Psp5II RGGWCCY 1 cut(s) 445
PspLI CGTACG 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 1 cut(s) 445
PspPPI RGGWCCY 1 cut(s) 445
PstI CTGCAG 1 cut(s) 17
PstNI CAGNNNCTG 2 cut(s) 152, 275
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 3 cut(s) 52, 60, 248
RsaNI GTAC 3 cut(s) 51, 59, 247
RseI CAYNNNNRTG 1 cut(s) 599
SaqAI TTAA 2 cut(s) 423, 468
SatI GCNGC 3 cut(s) 16, 65, 150
Sau96I GGNCC 1 cut(s) 445
SchI GAGTC 2 cut(s) 16, 386
SfaNI GCATC 2 cut(s) 129, 310
SfcI CTRYAG 1 cut(s) 13
SfoI GGCGCC 1 cut(s) 231
SinI GGWCC 1 cut(s) 445
SmiMI CAYNNNNRTG 1 cut(s) 599
SmlI CTYRAG 2 cut(s) 434, 558
SmoI CTYRAG 2 cut(s) 434, 558
Sse9I AATT 2 cut(s) 471, 515
SsiI CCGC 1 cut(s) 209
SspDI GGCGCC 1 cut(s) 229
SspI AATATT 1 cut(s) 427
TaaI ACNGT 2 cut(s) 246, 254
TaiI ACGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 475
TasI AATT 2 cut(s) 471, 515
TfiI GAWTC 1 cut(s) 550
Tru1I TTAA 2 cut(s) 423, 468
Tru9I TTAA 2 cut(s) 423, 468
TscAI CASTG 4 cut(s) 133, 259, 276, 601
TseI GCWGC 3 cut(s) 15, 64, 149
TspDTI ATGAA 3 cut(s) 63, 407, 528
TspGWI ACGGA 2 cut(s) 38, 372
TspRI CASTG 4 cut(s) 133, 259, 276, 601
VpaK11BI GGWCC 1 cut(s) 445
XapI RAATTY 1 cut(s) 471
XcmI CCANNNNNNNNNTGG 1 cut(s) 514
Zsp2I ATGCAT 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.