Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001514

Physical Location & Seq

Genomic Coordinates Forward (+)

11688362 .. 11689011

Gene Structure 650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G149200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGCCAGAGAAGCCTGGGAGCTTTAAACATTATTGTGAACTGGTGGGCCCAATGAATATCAGTGAATTTAAATACAGATATAATTTAGATAAACAGGTTGTAGTATTGTATACAGGTTGTAGTATTGGTGAAACTGGGGCAAATGTGTTGGTTGGAATCCAAGTTGCCCGGGGCGAGATTGATGAGTTTCAAGCTTGTGGGAGTTCTCTTGGATATGACTATGTAGTGGTGACCGATGACAATGAGTTCAGTCTTTTAATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004794 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006549 GO:0006566 GO:0006567 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009063 GO:0009066 GO:0009068 GO:0009081 GO:0009082 GO:0009097 GO:0009987 GO:0016053 GO:0016054 GO:0016829 GO:0016840 GO:0016841 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0071704 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00290 ko01100 ko01110 ko01130 ko01200 ko01230 map00260 map00290 map01100 map01110 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP Thr_dehydrat_C

Protein Analysis

89

Amino Acids

9.79

Weight (kDa)

4.6

Isoelectric Point (pI)

28.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10050
fragaria_vesca	FvH4_3g30040 FvH4_6g17350 FvH4_6g17350 FvH4_6g17350
malus_domestica	MD11G1153900.v1.1 MD12G1101800.v1.1 MD14G1095900.v1.1
prunus_persica	Prupe.1G149200_v2.0.a1 Prupe.6G116600_v2.0.a1 Prupe.7G044100_v2.0.a1 Prupe.7G122000_v2.0.a1
pyrus_communis	pycom11g12560 pycom11g12570 pycom12g10020
rosa_chinensis	RchiOBHm_Chr3g0471501 RchiOBHm_Chr4g0394271 RchiOBHm_Chr5g0055901
rosa_laevigata	RLG00000009710 RLG00000024173 RLG00000035019 RLG00000035020
rosa_multiflora	Rmu_co8179734.1_g000001 Rmu_sc0006582.1_g000005 Rmu_sc0006749.1_g000006
rosa_roxburghii	Rroxscaffold_1G00024450 Rroxscaffold_1G00024460 Rroxscaffold_6G00409900
rosa_rugosa	Rorug03G0118100 Rorug03G0118200 Rorug03G0118200 Rorug03G0118200 Rorug03G0368200.1 Rorug05G0295400
rosa_samantha	Rh3AG168100 Rh3BG193600 Rh3CG184100 Rh3DG181900 Rh4AG051200 Rh4BG048200 Rh4BG048400 Rh4CG055000 Rh4DG048100 Rh5AG366800 Rh5BG376900 Rh5CG400200 Rh5DG390400 Rh6BG174900
rosa_wichuraiana	Rw3G015840 Rw4G004080 Rw5G034380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	191
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	2 cut(s)	21, 194
AluI	AGCT	2 cut(s)	21, 194
Ama87I	CYCGRG	1 cut(s)	168
AoxI	GGCC	1 cut(s)	46
ApaI	GGGCCC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	65
AspS9I	GGNCC	2 cut(s)	46, 47
AsuC2I	CCSGG	2 cut(s)	169, 170
AsuHPI	GGTGA	2 cut(s)	140, 241
AvaI	CYCGRG	1 cut(s)	168
BaeGI	GKGCMC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	15
BcnI	CCSGG	2 cut(s)	169, 170
Bme1390I	CCNGG	3 cut(s)	15, 169, 170
BmeT110I	CYCGRG	1 cut(s)	168
BmgT120I	GGNCC	2 cut(s)	46, 47
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	3 cut(s)	15, 169, 170
BmrI	ACTGGG	1 cut(s)	144
BmuI	ACTGGG	1 cut(s)	144
BpuMI	CCSGG	2 cut(s)	169, 170
BsaJI	CCNNGG	3 cut(s)	14, 168, 169
Bse1I	ACTGG	2 cut(s)	45, 139
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	3 cut(s)	14, 168, 169
BseNI	ACTGG	2 cut(s)	45, 139
BseSI	GKGCMC	1 cut(s)	50
BshFI	GGCC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	169
BsnI	GGCC	1 cut(s)	48
BsoBI	CYCGRG	1 cut(s)	168
Bsp120I	GGGCCC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	50
BspANI	GGCC	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	45, 139
BssECI	CCNNGG	3 cut(s)	14, 168, 169
BssNAI	GTATAC	1 cut(s)	111
Bst1107I	GTATAC	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	15
BstEII	GGTNACC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	15
BstPI	GGTNACC	1 cut(s)	229
BstSCI	CCNGG	3 cut(s)	13, 167, 168
BstSLI	GKGCMC	1 cut(s)	50
BstZ17I	GTATAC	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	67
Cfr13I	GGNCC	2 cut(s)	46, 47
Cfr9I	CCCGGG	1 cut(s)	168
CviJI	RGCY	4 cut(s)	13, 21, 48, 194
CviKI_1	RGCY	4 cut(s)	13, 21, 48, 194
DraI	TTTAAA	2 cut(s)	25, 70
Eco24I	GRGCYC	1 cut(s)	50
Eco88I	CYCGRG	1 cut(s)	168
Eco91I	GGTNACC	1 cut(s)	229
EcoO65I	GGTNACC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	13
EcoT22I	ATGCAT	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	50
FaiI	YATR	4 cut(s)	81, 111, 216, 222
FblI	GTMKAC	1 cut(s)	110
FriOI	GRGCYC	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	192
HinfI	GANTC	1 cut(s)	156
HpaII	CCGG	1 cut(s)	169
HphI	GGTGA	2 cut(s)	140, 241
Hpy166II	GTNNAC	2 cut(s)	38, 111
Hpy8I	GTNNAC	2 cut(s)	38, 111
HpyCH4V	TGCA	1 cut(s)	262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	7 cut(s)	18, 26, 27, 80, 99, 120, 182
MaeIII	GTNAC	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	2 cut(s)	65, 82
MmeI	TCCRAC	1 cut(s)	133
Mph1103I	ATGCAT	1 cut(s)	264
MseI	TTAA	3 cut(s)	24, 69, 257
MslI	CAYNNNNRTG	1 cut(s)	33
MspI	CCGG	1 cut(s)	169
MspR9I	CCNGG	3 cut(s)	15, 169, 170
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	1 cut(s)	10
NciI	CCSGG	2 cut(s)	169, 170
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	229
NsiI	ATGCAT	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	13
PspEI	GGTNACC	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	48
PspOMI	GGGCCC	1 cut(s)	46
PspPI	GGNCC	2 cut(s)	46, 47
RseI	CAYNNNNRTG	1 cut(s)	33
SaqAI	TTAA	3 cut(s)	24, 69, 257
Sau96I	GGNCC	2 cut(s)	46, 47
ScrFI	CCNGG	3 cut(s)	15, 169, 170
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	4 cut(s)	23, 99, 118, 196
SmaI	CCCGGG	1 cut(s)	170
SmiI	ATTTAAAT	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	33
Sse9I	AATT	2 cut(s)	65, 82
StyD4I	CCNGG	3 cut(s)	13, 167, 168
SwaI	ATTTAAAT	1 cut(s)	70
TaqII	GACCGA	1 cut(s)	248
TasI	AATT	2 cut(s)	65, 82
TfiI	GAWTC	1 cut(s)	156
Tru1I	TTAA	3 cut(s)	24, 69, 257
Tru9I	TTAA	3 cut(s)	24, 69, 257
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	68
TspMI	CCCGGG	1 cut(s)	168
TspRI	CASTG	1 cut(s)	67
XapI	RAATTY	1 cut(s)	65
XmaI	CCCGGG	1 cut(s)	168
XmiI	GTMKAC	1 cut(s)	110
Zsp2I	ATGCAT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.