Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001514

Physical Location & Seq

Genomic Coordinates Reverse (-)

56796144 .. 56797834

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009710

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGAGGCCCTTCACCTTAGCTCAGTTCAGTCCCCTATTCTCCCACCAAAACGATTGAAATCATTCCCTCCCGGGACCCAAAAGGTTAGCACACGCCGTCCCAACAATCCATCGTTCATCACTGCCACATTGTCCCGACCAACAACTGAGATTTCCGCTGCATCGAGCCTACCTCACCTCCTGAGTCCTGACTCTGTCATCGCCTTCCAATCGGTTTGGCTCAAAAGGGAAGATTTGCAGTCGGTATTTTCGTTCAAGCTTCGTGGAGCTTACAATATGATGGCTAAGATTCCAAGGGAACAATTGGACAGAGGGGTTATATGCTCGTCGGCTGGGAACCATGCACAAGGAGTTGCATTTTCCGCCAAGAAATTGGGTTGCAATGCAGTCATTGCAATGCCTGTAACTACACCAGAAATCAGTGGCAATCTGTTGAGAGATTGGGAGCCACAGTTGTACGGAACAGTTGGAATGGAGAGGCTGTCTCCAGAGGTAAAGATTATTGGTGTGGAGCCCTCAGATGCGAATGCAATGGCATTATCCTTGCATCACGGAGAGAGAATAATGTTGGACCAAGTTGGAGGTTTTGCAGATGGTGTAGCAGTGAAAGAGAAGCATTTTAGAACCGCTGAAGCATACTGCAAGTATTATGGTCTTAAAGGAGAAAATGTTGTTGCAATTACCAGCGGGGCGAATATGAACTTTGATATACTGAGAGTGGTGACTGAACTTGCAAATGTTGGTCTGCAACAAGAGGCTGTACTCGCAACAGTTATGCCAGAGGTGCCTGGGAGCTTTAAACATGTTGGTGTGCACACAGCTTCTGAACTTGAAGCAATGCAAGAGCGCGTGGAGTCTTCTCAACTCAAAACGATCAATCTCACGAAAAGTGACTTGGTTAAAGATCACTTGCGTTACTTGATGGGGGGCAGAATAAATGTTGAAAATGAGGTTCTTTGTCGCTTTGTCTTCCCAGAAAGGCCTGGTGCTTTGATGAAGTTCTTGGACACCTTTACTCCACGTTGGAATATTAGTTTATTCCACTACCGCGGTCAGAGTGAAACTGGGGCAAATGTCTTGGTTGGAATCCAAGTTTCCAAGAGCGAGACTGATGAGTTCCATTGTCGTGCCAGTTCACTTGGGTATGACTATGTAGTAGTGACCAATGATACAAACTTCGAGCTTTTGATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004794 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006549 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009097 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016841 GO:0019752 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00290 ko01100 ko01110 ko01130 ko01200 ko01230 map00260 map00290 map01100 map01110 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP Thr_dehydrat_C

Protein Analysis

399

Amino Acids

43.88

Weight (kDa)

6.87

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	71 - 146	4.8e-19	Pyridoxal-phosphate dependent enzyme
Thr_dehydrat_C	PF00585	309 - 395	2.4e-23	C-terminal regulatory domain of Threonine dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10050
fragaria_vesca	FvH4_3g30040 FvH4_6g17350 FvH4_6g17350 FvH4_6g17350
malus_domestica	MD11G1153900.v1.1 MD12G1101800.v1.1 MD14G1095900.v1.1
prunus_persica	Prupe.1G149200_v2.0.a1 Prupe.6G116600_v2.0.a1 Prupe.7G044100_v2.0.a1 Prupe.7G122000_v2.0.a1
pyrus_communis	pycom11g12560 pycom11g12570 pycom12g10020
rosa_chinensis	RchiOBHm_Chr3g0471501 RchiOBHm_Chr4g0394271 RchiOBHm_Chr5g0055901
rosa_laevigata	RLG00000009710 RLG00000024173 RLG00000035019 RLG00000035020
rosa_multiflora	Rmu_co8179734.1_g000001 Rmu_sc0006582.1_g000005 Rmu_sc0006749.1_g000006
rosa_roxburghii	Rroxscaffold_1G00024450 Rroxscaffold_1G00024460 Rroxscaffold_6G00409900
rosa_rugosa	Rorug03G0118100 Rorug03G0118200 Rorug03G0118200 Rorug03G0118200 Rorug03G0368200.1 Rorug05G0295400
rosa_samantha	Rh3AG168100 Rh3BG193600 Rh3CG184100 Rh3DG181900 Rh4AG051200 Rh4BG048200 Rh4BG048400 Rh4CG055000 Rh4DG048100 Rh5AG366800 Rh5BG376900 Rh5CG400200 Rh5DG390400 Rh6BG174900
rosa_wichuraiana	Rw3G015840 Rw4G004080 Rw5G034380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	784
AccII	CGCG	2 cut(s)	849, 1050
AciI	CCGC	6 cut(s)	156, 363, 627, 687, 1048, 1050
AcuI	CTGAAG	1 cut(s)	651
AfaI	GTAC	2 cut(s)	458, 762
AflIII	ACRYGT	1 cut(s)	802
AgsI	TTSAA	4 cut(s)	58, 256, 833, 944
AjnI	CCWGG	2 cut(s)	787, 982
AjuI	GAANNNNNNNTTGG	2 cut(s)	878, 910
AluBI	AGCT	6 cut(s)	21, 259, 269, 795, 821, 1183
AluI	AGCT	6 cut(s)	21, 259, 269, 795, 821, 1183
Alw21I	GWGCWC	1 cut(s)	816
Alw26I	GTCTC	2 cut(s)	489, 1100
Alw44I	GTGCAC	1 cut(s)	812
AlwNI	CAGNNNCTG	1 cut(s)	824
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	2 cut(s)	6, 980
ApaLI	GTGCAC	1 cut(s)	812
ApeKI	GCWGC	1 cut(s)	158
Asp700I	GAANNNNTTC	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	849
AspS9I	GGNCC	3 cut(s)	7, 75, 571
AsuC2I	CCSGG	2 cut(s)	72, 73
AsuHPI	GGTGA	3 cut(s)	5, 167, 733
AvaI	CYCGRG	1 cut(s)	71
AvaII	GGWCC	2 cut(s)	75, 571
BaeGI	GKGCMC	1 cut(s)	816
BanI	GGYRCC	1 cut(s)	784
BanII	GRGCYC	1 cut(s)	516
BbsI	GAAGAC	2 cut(s)	849, 961
Bbv12I	GWGCWC	1 cut(s)	816
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	4 cut(s)	118, 274, 587, 916
BceAI	ACGGC	1 cut(s)	81
BciT130I	CCWGG	2 cut(s)	789, 984
BcnI	CCSGG	2 cut(s)	72, 73
BcoDI	GTCTC	2 cut(s)	489, 1100
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
Bme1390I	CCNGG	4 cut(s)	72, 73, 789, 984
Bme18I	GGWCC	2 cut(s)	75, 571
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	3 cut(s)	7, 75, 571
BmiI	GGNNCC	6 cut(s)	76, 77, 338, 447, 513, 786
BmrFI	CCNGG	4 cut(s)	72, 73, 789, 984
BmrI	ACTGGG	1 cut(s)	1074
BmsI	GCATC	4 cut(s)	170, 511, 556, 1179
BmuI	ACTGGG	1 cut(s)	1074
BpiI	GAAGAC	2 cut(s)	849, 961
BplI	GAGNNNNNCTC	4 cut(s)	157, 189, 469, 501
BpmI	CTGGAG	1 cut(s)	471
Bpu10I	CCTNAGC	1 cut(s)	17
BpuMI	CCSGG	2 cut(s)	72, 73
BsaBI	GATNNNNATC	1 cut(s)	58
BsaJI	CCNNGG	4 cut(s)	71, 293, 788, 1048
Bse1I	ACTGG	2 cut(s)	1069, 1131
Bse3DI	GCAATG	5 cut(s)	388, 390, 402, 537, 843
Bse8I	GATNNNNATC	1 cut(s)	58
BseBI	CCWGG	2 cut(s)	789, 984
BseDI	CCNNGG	4 cut(s)	71, 293, 788, 1048
BseJI	GATNNNNATC	1 cut(s)	58
BseMI	GCAATG	5 cut(s)	388, 390, 402, 537, 843
BseMII	CTCAG	5 cut(s)	36, 138, 173, 531, 704
BseNI	ACTGG	2 cut(s)	1069, 1131
BseSI	GKGCMC	1 cut(s)	816
BseXI	GCAGC	1 cut(s)	145
BseYI	CCCAGC	1 cut(s)	332
Bsh1236I	CGCG	2 cut(s)	849, 1050
BshFI	GGCC	2 cut(s)	8, 982
BshNI	GGYRCC	1 cut(s)	784
BsiHKAI	GWGCWC	1 cut(s)	816
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	4 cut(s)	16, 84, 88, 118
BsmAI	GTCTC	2 cut(s)	489, 1100
BsmFI	GGGAC	4 cut(s)	16, 84, 88, 118
BsmI	GAATGC	1 cut(s)	532
BsnI	GGCC	2 cut(s)	8, 982
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	2 cut(s)	516, 816
Bsp143I	GATC	2 cut(s)	873, 904
BspACI	CCGC	6 cut(s)	156, 363, 627, 687, 1048, 1050
BspANI	GGCC	2 cut(s)	8, 982
BspCNI	CTCAG	5 cut(s)	35, 139, 174, 530, 705
BspFNI	CGCG	2 cut(s)	849, 1050
BspLI	GGNNCC	6 cut(s)	76, 77, 338, 447, 513, 786
BspT107I	GGYRCC	1 cut(s)	784
BsrDI	GCAATG	5 cut(s)	388, 390, 402, 537, 843
BsrI	ACTGG	2 cut(s)	1069, 1131
BssECI	CCNNGG	4 cut(s)	71, 293, 788, 1048
BssMI	GATC	2 cut(s)	873, 904
BssT1I	CCWWGG	1 cut(s)	293
Bst2UI	CCWGG	2 cut(s)	789, 984
Bst4CI	ACNGT	3 cut(s)	453, 466, 772
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstDEI	CTNAG	7 cut(s)	17, 22, 147, 182, 285, 517, 713
BstDSI	CCRYGG	1 cut(s)	1048
BstFNI	CGCG	2 cut(s)	849, 1050
BstHHI	GCGC	1 cut(s)	849
BstKTI	GATC	2 cut(s)	876, 907
BstMAI	GTCTC	2 cut(s)	489, 1100
BstMBI	GATC	2 cut(s)	873, 904
BstMWI	GCNNNNNNNGC	5 cut(s)	362, 392, 764, 784, 1189
BstNI	CCWGG	2 cut(s)	789, 984
BstNSI	RCATGY	1 cut(s)	806
BstSCI	CCNGG	4 cut(s)	70, 71, 787, 982
BstSLI	GKGCMC	1 cut(s)	816
BstUI	CGCG	2 cut(s)	849, 1050
BstV1I	GCAGC	1 cut(s)	145
BstV2I	GAAGAC	2 cut(s)	849, 961
BstXI	CCANNNNNNTGG	1 cut(s)	373
BsuRI	GGCC	2 cut(s)	8, 982
BtgI	CCRYGG	1 cut(s)	1048
BtgZI	GCGATG	1 cut(s)	184
BtsI	GCAGTG	2 cut(s)	120, 609
BtsIMutI	CAGTG	3 cut(s)	120, 427, 609
CaiI	CAGNNNCTG	1 cut(s)	824
CfoI	GCGC	1 cut(s)	849
Cfr13I	GGNCC	3 cut(s)	7, 75, 571
Cfr42I	CCGCGG	1 cut(s)	1051
Cfr9I	CCCGGG	1 cut(s)	71
Csp6I	GTAC	2 cut(s)	457, 761
CspCI	CAANNNNNGTGG	2 cut(s)	244, 279
CviAII	CATG	2 cut(s)	341, 803
CviQI	GTAC	2 cut(s)	457, 761
DdeI	CTNAG	7 cut(s)	17, 22, 147, 182, 285, 517, 713
DpnI	GATC	2 cut(s)	875, 906
DpnII	GATC	2 cut(s)	873, 904
DraI	TTTAAA	1 cut(s)	799
EciI	GGCGGA	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	293
Eco147I	AGGCCT	1 cut(s)	982
Eco24I	GRGCYC	1 cut(s)	516
Eco47I	GGWCC	2 cut(s)	75, 571
Eco57I	CTGAAG	1 cut(s)	651
Eco88I	CYCGRG	1 cut(s)	71
EcoO109I	RGGNCCY	2 cut(s)	7, 75
EcoRII	CCWGG	2 cut(s)	787, 982
EcoT14I	CCWWGG	1 cut(s)	293
EcoT22I	ATGCAT	1 cut(s)	1194
EcoT38I	GRGCYC	1 cut(s)	516
ErhI	CCWWGG	1 cut(s)	293
FaeI	CATG	2 cut(s)	344, 806
FaqI	GGGAC	4 cut(s)	16, 84, 88, 118
FatI	CATG	2 cut(s)	340, 802
FauI	CCCGC	1 cut(s)	680
Fnu4HI	GCNGC	1 cut(s)	159
FriOI	GRGCYC	1 cut(s)	516
Fsp4HI	GCNGC	1 cut(s)	159
GlaI	GCGC	1 cut(s)	848
GluI	GCNGC	1 cut(s)	159
GsaI	CCCAGC	1 cut(s)	336
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	2 cut(s)	8, 982
HapII	CCGG	1 cut(s)	72
HhaI	GCGC	1 cut(s)	849
Hin1II	CATG	2 cut(s)	344, 806
Hin6I	GCGC	1 cut(s)	847
HinP1I	GCGC	1 cut(s)	847
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	5 cut(s)	184, 191, 289, 854, 1086
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	3 cut(s)	5, 167, 733
Hpy166II	GTNNAC	2 cut(s)	814, 1136
Hpy188I	TCNGA	3 cut(s)	520, 826, 1056
Hpy188III	TCNNGA	5 cut(s)	135, 181, 188, 488, 883
Hpy8I	GTNNAC	2 cut(s)	814, 1136
Hpy99I	CGWCG	1 cut(s)	331
HpyAV	CCTTC	2 cut(s)	20, 214
HpyCH4III	ACNGT	3 cut(s)	453, 466, 772
HpyCH4IV	ACGT	1 cut(s)	1021
HpyF10VI	GCNNNNNNNGC	5 cut(s)	362, 392, 764, 784, 1189
HpyF3I	CTNAG	7 cut(s)	17, 22, 147, 182, 285, 517, 713
HpySE526I	ACGT	1 cut(s)	1021
Hsp92II	CATG	2 cut(s)	344, 806
HspAI	GCGC	1 cut(s)	847
KflI	GGGWCCC	1 cut(s)	75
KspI	CCGCGG	1 cut(s)	1051
Kzo9I	GATC	2 cut(s)	873, 904
LmnI	GCTCC	4 cut(s)	266, 445, 511, 792
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	4 cut(s)	170, 511, 556, 1179
MaeII	ACGT	1 cut(s)	1021
MaeIII	GTNAC	5 cut(s)	403, 721, 890, 914, 1159
MalI	GATC	2 cut(s)	875, 906
MboI	GATC	2 cut(s)	873, 904
MboII	GAAGA	3 cut(s)	242, 849, 961
MfeI	CAATTG	1 cut(s)	302
MhlI	GDGCHC	2 cut(s)	516, 816
MluCI	AATT	3 cut(s)	302, 371, 678
MlyI	GAGTC	3 cut(s)	185, 193, 863
MmeI	TCCRAC	5 cut(s)	448, 549, 559, 1004, 1063
Mph1103I	ATGCAT	1 cut(s)	1194
MroXI	GAANNNNTTC	1 cut(s)	62
MseI	TTAA	3 cut(s)	657, 798, 900
MslI	CAYNNNNRTG	3 cut(s)	395, 807, 1125
MspA1I	CMGCKG	4 cut(s)	158, 629, 687, 1050
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	4 cut(s)	72, 73, 789, 984
MunI	CAATTG	1 cut(s)	302
Mva1269I	GAATGC	1 cut(s)	532
MvaI	CCWGG	2 cut(s)	789, 984
MvnI	CGCG	2 cut(s)	849, 1050
MwoI	GCNNNNNNNGC	5 cut(s)	362, 392, 764, 784, 1189
NciI	CCSGG	2 cut(s)	72, 73
NdeII	GATC	2 cut(s)	873, 904
NlaIII	CATG	2 cut(s)	344, 806
NlaIV	GGNNCC	6 cut(s)	76, 77, 338, 447, 513, 786
NmuCI	GTSAC	3 cut(s)	721, 890, 1159
NsiI	ATGCAT	1 cut(s)	1194
NspI	RCATGY	1 cut(s)	806
PceI	AGGCCT	1 cut(s)	982
PciI	ACATGT	1 cut(s)	802
PcsI	WCGNNNNNNNCGW	1 cut(s)	248
PctI	GAATGC	1 cut(s)	532
PdmI	GAANNNNTTC	1 cut(s)	62
PfeI	GAWTC	2 cut(s)	289, 1086
PflFI	GACNNNGTC	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	160
PleI	GAGTC	3 cut(s)	185, 192, 862
PpsI	GAGTC	3 cut(s)	185, 192, 862
PpuMI	RGGWCCY	1 cut(s)	75
PscI	ACATGT	1 cut(s)	802
Psp5II	RGGWCCY	1 cut(s)	75
Psp6I	CCWGG	2 cut(s)	787, 982
PspFI	CCCAGC	1 cut(s)	332
PspGI	CCWGG	2 cut(s)	787, 982
PspN4I	GGNNCC	6 cut(s)	76, 77, 338, 447, 513, 786
PspPI	GGNCC	3 cut(s)	7, 75, 571
PspPPI	RGGWCCY	1 cut(s)	75
PstNI	CAGNNNCTG	1 cut(s)	824
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	2 cut(s)	458, 762
RsaNI	GTAC	2 cut(s)	457, 761
RseI	CAYNNNNRTG	3 cut(s)	395, 807, 1125
SacII	CCGCGG	1 cut(s)	1051
SaqAI	TTAA	3 cut(s)	657, 798, 900
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	2 cut(s)	873, 904
Sau96I	GGNCC	3 cut(s)	7, 75, 571
SchI	GAGTC	3 cut(s)	185, 193, 863
ScrFI	CCNGG	4 cut(s)	72, 73, 789, 984
SduI	GDGCHC	2 cut(s)	516, 816
SfaNI	GCATC	4 cut(s)	170, 511, 556, 1179
Sfr303I	CCGCGG	1 cut(s)	1051
SgrBI	CCGCGG	1 cut(s)	1051
SinI	GGWCC	2 cut(s)	75, 571
SmaI	CCCGGG	1 cut(s)	73
SmiMI	CAYNNNNRTG	3 cut(s)	395, 807, 1125
Sse9I	AATT	3 cut(s)	302, 371, 678
SseBI	AGGCCT	1 cut(s)	982
SsiI	CCGC	6 cut(s)	156, 363, 627, 687, 1048, 1050
SspI	AATATT	1 cut(s)	1030
StuI	AGGCCT	1 cut(s)	982
StyD4I	CCNGG	4 cut(s)	70, 71, 787, 982
StyI	CCWWGG	1 cut(s)	293
TaaI	ACNGT	3 cut(s)	453, 466, 772
TaiI	ACGT	1 cut(s)	1024
TaqI	TCGA	2 cut(s)	164, 1179
TasI	AATT	3 cut(s)	302, 371, 678
TatI	WGTACW	1 cut(s)	760
TfiI	GAWTC	2 cut(s)	289, 1086
Tru1I	TTAA	3 cut(s)	657, 798, 900
Tru9I	TTAA	3 cut(s)	657, 798, 900
TscAI	CASTG	3 cut(s)	127, 427, 609
TseFI	GTSAC	3 cut(s)	721, 890, 1159
TseI	GCWGC	1 cut(s)	158
Tsp45I	GTSAC	3 cut(s)	721, 890, 1159
TspDTI	ATGAA	3 cut(s)	106, 713, 1010
TspGWI	ACGGA	2 cut(s)	474, 567
TspMI	CCCGGG	1 cut(s)	71
TspRI	CASTG	3 cut(s)	127, 427, 609
Tth111I	GACNNNGTC	1 cut(s)	194
VneI	GTGCAC	1 cut(s)	812
VpaK11BI	GGWCC	2 cut(s)	75, 571
XceI	RCATGY	1 cut(s)	806
XmaI	CCCGGG	1 cut(s)	71
XmnI	GAANNNNTTC	1 cut(s)	62
Zsp2I	ATGCAT	1 cut(s)	1194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.