Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8179734.1

Orthogroup ID

OG0001514

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 630

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8179734.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 542 bp

atggaggcccttcaccttagctcagttcagtcccctattctcccaccaaaacggtttgaatcattccctctcgggacacgaaaggttagcacacgccgtcccaacaatccattgttcatcactgccacattgtcccgaccaacaactgagatttccgctgaatcctcctcgtcctctgcatctagcctgcctcacctcctgactccgtcatcgcctcccaatcgggtctctactagttccttacagtatgaacaaggttttcttggggcagtacctgaccgtacagttgctaatggaaacaacgacatcgttgacgctctgggatctttgacgaacatattgacgtcaaaagtgtatgacgtggcaattgaatcgcctttggagctggcaaccaagctatccgagcggttgggagtgaacatttggctcaaaagggaagatttgcagccggtgttttcgtttaagcttcgtggagcttataatatgatggctaagattccaagggaacaattggacagaggggttatatgctcgtcggctgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004794 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006549 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009097 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016841 GO:0019752 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00290 ko01100 ko01110 ko01130 ko01200 ko01230 map00260 map00290 map01100 map01110 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP Thr_dehydrat_C

Protein Analysis

181

Amino Acids

19.67

Weight (kDa)

9.2

Isoelectric Point (pI)

62.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10050
fragaria_vesca	FvH4_3g30040 FvH4_6g17350 FvH4_6g17350 FvH4_6g17350
malus_domestica	MD11G1153900.v1.1 MD12G1101800.v1.1 MD14G1095900.v1.1
prunus_persica	Prupe.1G149200_v2.0.a1 Prupe.6G116600_v2.0.a1 Prupe.7G044100_v2.0.a1 Prupe.7G122000_v2.0.a1
pyrus_communis	pycom11g12560 pycom11g12570 pycom12g10020
rosa_chinensis	RchiOBHm_Chr3g0471501 RchiOBHm_Chr4g0394271 RchiOBHm_Chr5g0055901
rosa_laevigata	RLG00000009710 RLG00000024173 RLG00000035019 RLG00000035020
rosa_multiflora	Rmu_co8179734.1_g000001 Rmu_sc0006582.1_g000005 Rmu_sc0006749.1_g000006
rosa_roxburghii	Rroxscaffold_1G00024450 Rroxscaffold_1G00024460 Rroxscaffold_6G00409900
rosa_rugosa	Rorug03G0118100 Rorug03G0118200 Rorug03G0118200 Rorug03G0118200 Rorug03G0368200.1 Rorug05G0295400
rosa_samantha	Rh3AG168100 Rh3BG193600 Rh3CG184100 Rh3DG181900 Rh4AG051200 Rh4BG048200 Rh4BG048400 Rh4CG055000 Rh4DG048100 Rh5AG366800 Rh5BG376900 Rh5CG400200 Rh5DG390400 Rh6BG174900
rosa_wichuraiana	Rw3G015840 Rw4G004080 Rw5G034380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	480
AatII	GACGTC	1 cut(s)	347
AccBSI	CCGCTC	1 cut(s)	406
AciI	CCGC	2 cut(s)	156, 406
AclWI	GGATC	1 cut(s)	331
AcyI	GRCGYC	1 cut(s)	344
AfaI	GTAC	2 cut(s)	273, 283
AgsI	TTSAA	2 cut(s)	59, 371
AhlI	ACTAGT	1 cut(s)	233
AjiI	CACGTC	1 cut(s)	361
AluBI	AGCT	5 cut(s)	21, 385, 397, 466, 476
AluI	AGCT	5 cut(s)	21, 385, 397, 466, 476
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	1 cut(s)	331
AlwNI	CAGNNNCTG	1 cut(s)	275
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	445
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	2 cut(s)	5, 185
AvaI	CYCGRG	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	1 cut(s)	481
BceAI	ACGGC	1 cut(s)	81
BcgI	CGANNNNNNTGC	2 cut(s)	354, 388
BcoDI	GTCTC	1 cut(s)	232
BcuI	ACTAGT	1 cut(s)	233
BfaI	CTAG	2 cut(s)	183, 234
BisI	GCNGC	1 cut(s)	446
BlsI	GCNGC	1 cut(s)	447
BmeT110I	CYCGRG	1 cut(s)	71
BmgBI	CACGTC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	7
BmsI	GCATC	1 cut(s)	188
Bpu10I	CCTNAGC	1 cut(s)	17
BsaHI	GRCGYC	1 cut(s)	344
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	500
Bse118I	RCCGGY	1 cut(s)	448
BseDI	CCNNGG	1 cut(s)	500
BseMII	CTCAG	2 cut(s)	36, 138
BseRI	GAGGAG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	457
BshFI	GGCC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	449
BslFI	GGGAC	4 cut(s)	16, 84, 88, 118
BsmAI	GTCTC	1 cut(s)	232
BsmFI	GGGAC	4 cut(s)	16, 84, 88, 118
BsnI	GGCC	1 cut(s)	8
Bso31I	GGTCTC	1 cut(s)	232
BsoBI	CYCGRG	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	323
BspACI	CCGC	2 cut(s)	156, 406
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	2 cut(s)	35, 139
BspPI	GGATC	1 cut(s)	331
BspTNI	GGTCTC	1 cut(s)	232
BsrBI	CCGCTC	1 cut(s)	406
BsrFI	RCCGGY	1 cut(s)	448
BssAI	RCCGGY	1 cut(s)	448
BssECI	CCNNGG	1 cut(s)	500
BssMI	GATC	1 cut(s)	323
BssNI	GRCGYC	1 cut(s)	344
BssT1I	CCWWGG	1 cut(s)	500
Bst4CI	ACNGT	4 cut(s)	54, 246, 281, 286
BstACI	GRCGYC	1 cut(s)	344
BstC8I	GCNNGC	2 cut(s)	188, 387
BstDEI	CTNAG	4 cut(s)	17, 22, 147, 492
BstKTI	GATC	1 cut(s)	326
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	323
BstMWI	GCNNNNNNNGC	2 cut(s)	382, 403
BstV1I	GCAGC	1 cut(s)	457
BstX2I	RGATCY	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	8
BtgZI	GCGATG	1 cut(s)	195
BtrI	CACGTC	1 cut(s)	361
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	2 cut(s)	188, 387
CaiI	CAGNNNCTG	1 cut(s)	275
Cfr10I	RCCGGY	1 cut(s)	448
Cfr13I	GGNCC	1 cut(s)	7
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	272, 282
CviQI	GTAC	2 cut(s)	272, 282
DdeI	CTNAG	4 cut(s)	17, 22, 147, 492
DpnI	GATC	1 cut(s)	325
DpnII	GATC	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	500
Eco31I	GGTCTC	1 cut(s)	232
Eco88I	CYCGRG	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	500
ErhI	CCWWGG	1 cut(s)	500
FaiI	YATR	7 cut(s)	249, 338, 357, 480, 485, 527, 529
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FaqI	GGGAC	4 cut(s)	16, 84, 88, 118
Fnu4HI	GCNGC	1 cut(s)	446
Fsp4HI	GCNGC	1 cut(s)	446
FspBI	CTAG	2 cut(s)	183, 234
GluI	GCNGC	1 cut(s)	446
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	449
HgaI	GACGC	1 cut(s)	323
Hin1I	GRCGYC	1 cut(s)	344
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	5 cut(s)	59, 161, 202, 371, 496
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	2 cut(s)	5, 185
Hpy166II	GTNNAC	2 cut(s)	313, 418
Hpy188I	TCNGA	1 cut(s)	403
Hpy188III	TCNNGA	3 cut(s)	73, 135, 199
Hpy8I	GTNNAC	2 cut(s)	313, 418
Hpy99I	CGWCG	1 cut(s)	538
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	4 cut(s)	54, 246, 281, 286
HpyCH4IV	ACGT	2 cut(s)	344, 360
HpyCH4V	TGCA	2 cut(s)	179, 445
HpyF10VI	GCNNNNNNNGC	2 cut(s)	382, 403
HpyF3I	CTNAG	4 cut(s)	17, 22, 147, 492
HpySE526I	ACGT	2 cut(s)	344, 360
Hsp92I	GRCGYC	1 cut(s)	344
Kzo9I	GATC	1 cut(s)	323
LmnI	GCTCC	2 cut(s)	382, 473
LpnPI	CCDG	7 cut(s)	200, 212, 288, 305, 371, 462, 525
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	1 cut(s)	188
MaeI	CTAG	2 cut(s)	183, 234
MaeII	ACGT	2 cut(s)	344, 360
MalI	GATC	1 cut(s)	325
MbiI	CCGCTC	1 cut(s)	406
MboI	GATC	1 cut(s)	323
MboII	GAAGA	1 cut(s)	449
MfeI	CAATTG	2 cut(s)	366, 509
MflI	RGATCY	1 cut(s)	323
MluCI	AATT	2 cut(s)	366, 509
MlyI	GAGTC	1 cut(s)	196
MnlI	CCTC	8 cut(s)	78, 175, 178, 184, 201, 206, 225, 512
MseI	TTAA	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	1 cut(s)	449
MunI	CAATTG	2 cut(s)	366, 509
MwoI	GCNNNNNNNGC	2 cut(s)	382, 403
NdeII	GATC	1 cut(s)	323
PfeI	GAWTC	4 cut(s)	59, 161, 371, 496
PflFI	GACNNNGTC	1 cut(s)	205
PkrI	GCNGC	1 cut(s)	447
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PsiI	TTATAA	1 cut(s)	480
PspPI	GGNCC	1 cut(s)	7
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	323
PsyI	GACNNNGTC	1 cut(s)	205
RsaI	GTAC	2 cut(s)	273, 283
RsaNI	GTAC	2 cut(s)	272, 282
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	1 cut(s)	446
Sau3AI	GATC	1 cut(s)	323
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	1 cut(s)	196
SfaNI	GCATC	1 cut(s)	188
SpeI	ACTAGT	1 cut(s)	233
Sse9I	AATT	2 cut(s)	366, 509
SsiI	CCGC	2 cut(s)	156, 406
SspMI	CTAG	2 cut(s)	183, 234
StyI	CCWWGG	1 cut(s)	500
TaaI	ACNGT	4 cut(s)	54, 246, 281, 286
TaiI	ACGT	2 cut(s)	347, 363
TasI	AATT	2 cut(s)	366, 509
TfiI	GAWTC	4 cut(s)	59, 161, 371, 496
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	1 cut(s)	445
TspDTI	ATGAA	2 cut(s)	106, 264
TspGWI	ACGGA	1 cut(s)	195
TspRI	CASTG	1 cut(s)	127
Tth111I	GACNNNGTC	1 cut(s)	205
XspI	CTAG	2 cut(s)	183, 234
ZraI	GACGTC	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.