Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001514

Physical Location & Seq

Genomic Coordinates Forward (+)

8019855 .. 8020395

Gene Structure 541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G044100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGATGGCAAAGCTTCCAAGGGAGCAACTGGATCAAGGGGTTATTTGCTCCTCAGCTGGAAACCATGCCCAAGGAGTTGCCTTGGCTGCTAAGAAGTTGAATTGCAGTGCTGTGATTGCAATGCCTGTAACCACACCAGAAATTAAGTGGAAATCTGTTGAGAGATTGGGCGTCACGGTTGTTCTTATAGAGGATTCATATGATGAGGCTCAAACTTATGCTAAGAAGCGGGCTCAAGAGGAGGGAAGGAGCTTCATACCTCCTTTTGATCACCAAGATTTTTTTTTCTTCTTCACTTTTTTCAGTTTTTTTCTTCAAACTCAAAATGACACTTTTACCCCTCATTTTGATGGACAAATTGACAGAGTTGGATGGTATGACCCAATTGCAACTATTTGTCCAGTTAAAGGATGTCATTGCCTTAAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004794 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006549 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009097 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016841 GO:0019752 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00290 ko01100 ko01110 ko01130 ko01200 ko01230 map00260 map00290 map01100 map01110 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP Thr_dehydrat_C

Protein Analysis

144

Amino Acids

16.14

Weight (kDa)

6.05

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10050
fragaria_vesca	FvH4_3g30040 FvH4_6g17350 FvH4_6g17350 FvH4_6g17350
malus_domestica	MD11G1153900.v1.1 MD12G1101800.v1.1 MD14G1095900.v1.1
prunus_persica	Prupe.1G149200_v2.0.a1 Prupe.6G116600_v2.0.a1 Prupe.7G044100_v2.0.a1 Prupe.7G122000_v2.0.a1
pyrus_communis	pycom11g12560 pycom11g12570 pycom12g10020
rosa_chinensis	RchiOBHm_Chr3g0471501 RchiOBHm_Chr4g0394271 RchiOBHm_Chr5g0055901
rosa_laevigata	RLG00000009710 RLG00000024173 RLG00000035019 RLG00000035020
rosa_multiflora	Rmu_co8179734.1_g000001 Rmu_sc0006582.1_g000005 Rmu_sc0006749.1_g000006
rosa_roxburghii	Rroxscaffold_1G00024450 Rroxscaffold_1G00024460 Rroxscaffold_6G00409900
rosa_rugosa	Rorug03G0118100 Rorug03G0118200 Rorug03G0118200 Rorug03G0118200 Rorug03G0368200.1 Rorug05G0295400
rosa_samantha	Rh3AG168100 Rh3BG193600 Rh3CG184100 Rh3DG181900 Rh4AG051200 Rh4BG048200 Rh4BG048400 Rh4CG055000 Rh4DG048100 Rh5AG366800 Rh5BG376900 Rh5CG400200 Rh5DG390400 Rh6BG174900
rosa_wichuraiana	Rw3G015840 Rw4G004080 Rw5G034380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	229
AclWI	GGATC	1 cut(s)	39
AcyI	GRCGYC	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	407
AgsI	TTSAA	2 cut(s)	100, 317
AluBI	AGCT	3 cut(s)	13, 56, 252
AluI	AGCT	3 cut(s)	13, 56, 252
AlwI	GGATC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	235
BbvCI	CCTCAGC	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	2 cut(s)	344, 366
BclI	TGATCA	1 cut(s)	268
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bpu10I	CCTNAGC	1 cut(s)	52
BpuEI	CTTGAG	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	3 cut(s)	17, 70, 81
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
Bse1I	ACTGG	2 cut(s)	33, 401
Bse3DI	GCAATG	2 cut(s)	126, 415
BseDI	CCNNGG	3 cut(s)	17, 70, 81
BseGI	GGATG	2 cut(s)	377, 416
BseLI	CCNNNNNNNGG	1 cut(s)	407
BseMI	GCAATG	2 cut(s)	126, 415
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	33, 401
BseRI	GAGGAG	2 cut(s)	40, 254
BseXI	GCAGC	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	2 cut(s)	31, 268
BspACI	CCGC	1 cut(s)	229
BspCNI	CTCAG	1 cut(s)	65
BspPI	GGATC	1 cut(s)	39
BsrDI	GCAATG	2 cut(s)	126, 415
BsrI	ACTGG	2 cut(s)	33, 401
BssECI	CCNNGG	3 cut(s)	17, 70, 81
BssMI	GATC	2 cut(s)	31, 268
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	3 cut(s)	17, 70, 81
Bst4CI	ACNGT	1 cut(s)	178
BstACI	GRCGYC	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	3 cut(s)	52, 90, 222
BstF5I	GGATG	2 cut(s)	377, 416
BstKTI	GATC	2 cut(s)	34, 271
BstMBI	GATC	2 cut(s)	31, 268
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 116
BstV1I	GCAGC	1 cut(s)	73
BtsCI	GGATG	2 cut(s)	377, 416
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	231
CseI	GACGC	1 cut(s)	160
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	6 cut(s)	13, 56, 86, 209, 233, 252
CviKI_1	RGCY	6 cut(s)	13, 56, 86, 209, 233, 252
DdeI	CTNAG	3 cut(s)	52, 90, 222
DpnI	GATC	2 cut(s)	33, 270
DpnII	GATC	2 cut(s)	31, 268
Eco130I	CCWWGG	3 cut(s)	17, 70, 81
Eco24I	GRGCYC	1 cut(s)	235
EcoT14I	CCWWGG	3 cut(s)	17, 70, 81
EcoT38I	GRGCYC	1 cut(s)	235
ErhI	CCWWGG	3 cut(s)	17, 70, 81
FaeI	CATG	1 cut(s)	68
FaiI	YATR	7 cut(s)	66, 188, 199, 201, 219, 257, 378
FatI	CATG	1 cut(s)	64
FauI	CCCGC	1 cut(s)	222
FauNDI	CATATG	1 cut(s)	199
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	2 cut(s)	384, 423
FriOI	GRGCYC	1 cut(s)	235
Fsp4HI	GCNGC	1 cut(s)	87
GluI	GCNGC	1 cut(s)	87
HgaI	GACGC	1 cut(s)	160
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	68
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	1 cut(s)	194
HphI	GGTGA	1 cut(s)	263
Hpy188III	TCNNGA	1 cut(s)	236
HpyAV	CCTTC	1 cut(s)	240
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	3 cut(s)	105, 119, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 116
HpyF3I	CTNAG	3 cut(s)	52, 90, 222
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	68
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	31, 268
LmnI	GCTCC	3 cut(s)	22, 53, 249
LpnPI	CCDG	5 cut(s)	14, 42, 138, 150, 414
Lsp1109I	GCAGC	1 cut(s)	73
MaeIII	GTNAC	2 cut(s)	127, 172
MalI	GATC	2 cut(s)	33, 270
MboI	GATC	2 cut(s)	31, 268
MboII	GAAGA	3 cut(s)	280, 283, 305
MfeI	CAATTG	1 cut(s)	384
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	5 cut(s)	100, 141, 357, 384, 427
MmeI	TCCRAC	1 cut(s)	349
MnlI	CCTC	7 cut(s)	61, 184, 199, 232, 235, 270, 351
MseI	TTAA	3 cut(s)	144, 405, 423
MslI	CAYNNNNRTG	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	56
MunI	CAATTG	1 cut(s)	384
MwoI	GCNNNNNNNGC	2 cut(s)	86, 116
NdeI	CATATG	1 cut(s)	199
NdeII	GATC	2 cut(s)	31, 268
NlaIII	CATG	1 cut(s)	68
NmuCI	GTSAC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	88
PvuII	CAGCTG	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	3 cut(s)	144, 405, 423
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	2 cut(s)	31, 268
SduI	GDGCHC	1 cut(s)	235
SetI	ASST	4 cut(s)	15, 58, 254, 262
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
Sse9I	AATT	5 cut(s)	100, 141, 357, 384, 427
SsiI	CCGC	1 cut(s)	229
StyI	CCWWGG	3 cut(s)	17, 70, 81
TaaI	ACNGT	1 cut(s)	178
TasI	AATT	5 cut(s)	100, 141, 357, 384, 427
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	3 cut(s)	144, 405, 423
Tru9I	TTAA	3 cut(s)	144, 405, 423
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	186, 244
TspRI	CASTG	1 cut(s)	112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.