Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001514

Physical Location & Seq

Genomic Coordinates Forward (+)

7705763 .. 7706122

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG048100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCAAGAGCGCATGGAGTCTTCTCAACTGAAAACGATCAATCTCACAAAAAGTGACTTGGTTAAAGATCACTTGCGTTACTTGATGGGGGGCAGAATAAATGTTGAAAATGAGGTTCTTTGTCGCTTTGTCTTCCCAGAAAGGCCTGGTGCTTTGATGAAGTTCTTGGACACCTTTAGTCCACGTTGGAACATTAGTTTGTTCCACTACCGCGGACAGGGTGAGACTGGGGCAAATGTCTTGGCTGGAATCCAAGTTTCCAAGAGCGAGATTGATGAGTTCCATTCTCGTGCCAATTCACTTGGGTATGACTATGTAGTAGTGACCAATGATACAGACTTCGAGCTTTTGATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004794 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006549 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009097 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016841 GO:0019752 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00290 ko01100 ko01110 ko01130 ko01200 ko01230 map00260 map00290 map01100 map01110 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP Thr_dehydrat_C

Protein Analysis

119

Amino Acids

13.72

Weight (kDa)

5.76

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thr_dehydrat_C	PF00585	30 - 116	2.2e-25	C-terminal regulatory domain of Threonine dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10050
fragaria_vesca	FvH4_3g30040 FvH4_6g17350 FvH4_6g17350 FvH4_6g17350
malus_domestica	MD11G1153900.v1.1 MD12G1101800.v1.1 MD14G1095900.v1.1
prunus_persica	Prupe.1G149200_v2.0.a1 Prupe.6G116600_v2.0.a1 Prupe.7G044100_v2.0.a1 Prupe.7G122000_v2.0.a1
pyrus_communis	pycom11g12560 pycom11g12570 pycom12g10020
rosa_chinensis	RchiOBHm_Chr3g0471501 RchiOBHm_Chr4g0394271 RchiOBHm_Chr5g0055901
rosa_laevigata	RLG00000009710 RLG00000024173 RLG00000035019 RLG00000035020
rosa_multiflora	Rmu_co8179734.1_g000001 Rmu_sc0006582.1_g000005 Rmu_sc0006749.1_g000006
rosa_roxburghii	Rroxscaffold_1G00024450 Rroxscaffold_1G00024460 Rroxscaffold_6G00409900
rosa_rugosa	Rorug03G0118100 Rorug03G0118200 Rorug03G0118200 Rorug03G0118200 Rorug03G0368200.1 Rorug05G0295400
rosa_samantha	Rh3AG168100 Rh3BG193600 Rh3CG184100 Rh3DG181900 Rh4AG051200 Rh4BG048200 Rh4BG048400 Rh4CG055000 Rh4DG048100 Rh5AG366800 Rh5BG376900 Rh5CG400200 Rh5DG390400 Rh6BG174900
rosa_wichuraiana	Rw3G015840 Rw4G004080 Rw5G034380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	213
AciI	CCGC	2 cut(s)	211, 213
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	1 cut(s)	346
AluI	AGCT	1 cut(s)	346
Alw26I	GTCTC	1 cut(s)	218
AoxI	GGCC	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	12
AsuHPI	GGTGA	1 cut(s)	233
BauI	CACGAG	1 cut(s)	288
BbsI	GAAGAC	2 cut(s)	12, 124
BccI	CCATC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	218
Bme1390I	CCNGG	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	147
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	1 cut(s)	342
BmuI	ACTGGG	1 cut(s)	237
BpiI	GAAGAC	2 cut(s)	12, 124
BsaJI	CCNNGG	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseNI	ACTGG	1 cut(s)	232
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	36, 67
BspACI	CCGC	2 cut(s)	211, 213
BspANI	GGCC	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	2 cut(s)	36, 67
BssSI	CACGAG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	288
Bst2UI	CCWGG	1 cut(s)	147
BstDSI	CCRYGG	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	2 cut(s)	39, 70
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	2 cut(s)	36, 67
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	145
BstUI	CGCG	1 cut(s)	213
BstV2I	GAAGAC	2 cut(s)	12, 124
BsuRI	GGCC	1 cut(s)	145
BtgI	CCRYGG	1 cut(s)	211
CfoI	GCGC	1 cut(s)	12
Cfr42I	CCGCGG	1 cut(s)	214
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	3 cut(s)	145, 245, 346
CviKI_1	RGCY	3 cut(s)	145, 245, 346
DpnI	GATC	2 cut(s)	38, 69
DpnII	GATC	2 cut(s)	36, 67
Eco147I	AGGCCT	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	145
EcoT22I	ATGCAT	1 cut(s)	357
FaeI	CATG	1 cut(s)	16
FaiI	YATR	3 cut(s)	14, 309, 315
FatI	CATG	1 cut(s)	12
GlaI	GCGC	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	1 cut(s)	16
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HinfI	GANTC	2 cut(s)	17, 249
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	182
Hpy8I	GTNNAC	1 cut(s)	182
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	2 cut(s)	4, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpySE526I	ACGT	1 cut(s)	184
Hsp92II	CATG	1 cut(s)	16
HspAI	GCGC	1 cut(s)	10
KspI	CCGCGG	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	36, 67
LpnPI	CCDG	6 cut(s)	132, 150, 159, 203, 213, 231
LweI	GCATC	1 cut(s)	342
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	3 cut(s)	53, 77, 322
MalI	GATC	2 cut(s)	38, 69
MboI	GATC	2 cut(s)	36, 67
MboII	GAAGA	2 cut(s)	12, 124
MluCI	AATT	1 cut(s)	295
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	1 cut(s)	106
Mph1103I	ATGCAT	1 cut(s)	357
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	352
NdeII	GATC	2 cut(s)	36, 67
NlaIII	CATG	1 cut(s)	16
NmuCI	GTSAC	2 cut(s)	53, 322
NsiI	ATGCAT	1 cut(s)	357
PceI	AGGCCT	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	249
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
RseI	CAYNNNNRTG	1 cut(s)	288
SacII	CCGCGG	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	63
Sau3AI	GATC	2 cut(s)	36, 67
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	147
SetI	ASST	4 cut(s)	117, 176, 187, 348
SfaNI	GCATC	1 cut(s)	342
Sfr303I	CCGCGG	1 cut(s)	214
SgrBI	CCGCGG	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	288
Sse9I	AATT	1 cut(s)	295
SseBI	AGGCCT	1 cut(s)	145
SsiI	CCGC	2 cut(s)	211, 213
StuI	AGGCCT	1 cut(s)	145
StyD4I	CCNGG	1 cut(s)	145
TaiI	ACGT	1 cut(s)	187
TaqI	TCGA	1 cut(s)	342
TasI	AATT	1 cut(s)	295
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TseFI	GTSAC	2 cut(s)	53, 322
Tsp45I	GTSAC	2 cut(s)	53, 322
TspDTI	ATGAA	1 cut(s)	173
Zsp2I	ATGCAT	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.