Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001514

Physical Location & Seq

Genomic Coordinates Forward (+)

10853119 .. 10853622

Gene Structure 504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG055000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAACTTTGATAAACTGAGAGTGGTGACTGAACTTGCAAATGTTGGTCGGCAACAAGAGGCTGTACTCGCAACAGTTATGCCAGAGGTGCCTGGGAGCTTTAAACATTACTGTGAGCCGGTCGGCCCAATGAATATTAGTGAATTCAAATACAGATATAACTCTGATAAAAAGGCTGTCGTACTGTACAGTGTTGGTGTACACACAGCTTCTGAACTTGAAGCAATGCAAGAGCGCATGGAGTCTTCTCAACTCAAAACGATCAATCTCACGAAAAGTGACTTCGTTAAAGATCACTTGCGTTGCTTGATGGGGGGCAGAATAAATGTTGAAGATGAGGTTCTTTGTCGCTTTGTCTTCCCAGAAAGGCCTGGTGCTTTGATGAAGTTCTTGGACACCTTTAGTCCACGTTGGAATATTAATTTGTTCCACTACCGCGGACAGGGTGAAACTGGAGCAAATGTCTTGGTTGGAATCCAATTAAGTTTCCAAGAGCGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004794 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006549 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009097 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016841 GO:0019752 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00290 ko01100 ko01110 ko01130 ko01200 ko01230 map00260 map00290 map01100 map01110 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP Thr_dehydrat_C

Protein Analysis

167

Amino Acids

19.08

Weight (kDa)

6.43

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thr_dehydrat_C	PF00585	11 - 100	6.1e-22	C-terminal regulatory domain of Threonine dehydratase
Thr_dehydrat_C	PF00585	105 - 164	2.6e-17	C-terminal regulatory domain of Threonine dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10050
fragaria_vesca	FvH4_3g30040 FvH4_6g17350 FvH4_6g17350 FvH4_6g17350
malus_domestica	MD11G1153900.v1.1 MD12G1101800.v1.1 MD14G1095900.v1.1
prunus_persica	Prupe.1G149200_v2.0.a1 Prupe.6G116600_v2.0.a1 Prupe.7G044100_v2.0.a1 Prupe.7G122000_v2.0.a1
pyrus_communis	pycom11g12560 pycom11g12570 pycom12g10020
rosa_chinensis	RchiOBHm_Chr3g0471501 RchiOBHm_Chr4g0394271 RchiOBHm_Chr5g0055901
rosa_laevigata	RLG00000009710 RLG00000024173 RLG00000035019 RLG00000035020
rosa_multiflora	Rmu_co8179734.1_g000001 Rmu_sc0006582.1_g000005 Rmu_sc0006749.1_g000006
rosa_roxburghii	Rroxscaffold_1G00024450 Rroxscaffold_1G00024460 Rroxscaffold_6G00409900
rosa_rugosa	Rorug03G0118100 Rorug03G0118200 Rorug03G0118200 Rorug03G0118200 Rorug03G0368200.1 Rorug05G0295400
rosa_samantha	Rh3AG168100 Rh3BG193600 Rh3CG184100 Rh3DG181900 Rh4AG051200 Rh4BG048200 Rh4BG048400 Rh4CG055000 Rh4DG048100 Rh5AG366800 Rh5BG376900 Rh5CG400200 Rh5DG390400 Rh6BG174900
rosa_wichuraiana	Rw3G015840 Rw4G004080 Rw5G034380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	88
AccII	CGCG	1 cut(s)	438
AciI	CCGC	2 cut(s)	436, 438
AcsI	RAATTY	1 cut(s)	143
AfaI	GTAC	4 cut(s)	66, 183, 188, 201
AfiI	CCNNNNNNNGG	1 cut(s)	442
AgsI	TTSAA	3 cut(s)	148, 221, 332
AjnI	CCWGG	2 cut(s)	91, 370
AluBI	AGCT	2 cut(s)	99, 209
AluI	AGCT	2 cut(s)	99, 209
AlwNI	CAGNNNCTG	1 cut(s)	212
AoxI	GGCC	2 cut(s)	124, 368
ApoI	RAATTY	1 cut(s)	143
AseI	ATTAAT	1 cut(s)	420
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	125
AsuHPI	GGTGA	2 cut(s)	37, 458
BanI	GGYRCC	1 cut(s)	88
BbsI	GAAGAC	2 cut(s)	237, 349
BccI	CCATC	1 cut(s)	304
BciT130I	CCWGG	2 cut(s)	93, 372
Bme1390I	CCNGG	2 cut(s)	93, 372
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	2 cut(s)	93, 372
BpiI	GAAGAC	2 cut(s)	237, 349
BpmI	CTGGAG	1 cut(s)	474
BsaJI	CCNNGG	2 cut(s)	92, 436
BsaXI	ACNNNNNCTCC	2 cut(s)	447, 477
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse118I	RCCGGY	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	457
Bse3DI	GCAATG	1 cut(s)	231
BseBI	CCWGG	2 cut(s)	93, 372
BseDI	CCNNGG	2 cut(s)	92, 436
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	8
BseNI	ACTGG	1 cut(s)	457
Bsh1236I	CGCG	1 cut(s)	438
Bsh1285I	CGRYCG	1 cut(s)	123
BshFI	GGCC	2 cut(s)	126, 370
BshNI	GGYRCC	1 cut(s)	88
BsiEI	CGRYCG	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	442
BsnI	GGCC	2 cut(s)	126, 370
Bsp1407I	TGTACA	2 cut(s)	186, 199
Bsp143I	GATC	2 cut(s)	261, 292
BspACI	CCGC	2 cut(s)	436, 438
BspANI	GGCC	2 cut(s)	126, 370
BspCNI	CTCAG	1 cut(s)	9
BspFNI	CGCG	1 cut(s)	438
BspLI	GGNNCC	1 cut(s)	90
BspT107I	GGYRCC	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	118
BsrGI	TGTACA	2 cut(s)	186, 199
BsrI	ACTGG	1 cut(s)	457
BssAI	RCCGGY	1 cut(s)	118
BssECI	CCNNGG	2 cut(s)	92, 436
BssMI	GATC	2 cut(s)	261, 292
Bst2UI	CCWGG	2 cut(s)	93, 372
Bst4CI	ACNGT	4 cut(s)	76, 113, 186, 191
BstAUI	TGTACA	2 cut(s)	186, 199
BstDEI	CTNAG	1 cut(s)	17
BstDSI	CCRYGG	1 cut(s)	436
BstFNI	CGCG	1 cut(s)	438
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	2 cut(s)	264, 295
BstMBI	GATC	2 cut(s)	261, 292
BstMCI	CGRYCG	1 cut(s)	123
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 88
BstNI	CCWGG	2 cut(s)	93, 372
BstSCI	CCNGG	2 cut(s)	91, 370
BstUI	CGCG	1 cut(s)	438
BstV2I	GAAGAC	2 cut(s)	237, 349
BsuRI	GGCC	2 cut(s)	126, 370
BtgI	CCRYGG	1 cut(s)	436
BtsIMutI	CAGTG	1 cut(s)	196
CaiI	CAGNNNCTG	1 cut(s)	212
CfoI	GCGC	1 cut(s)	237
Cfr10I	RCCGGY	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	125
Cfr42I	CCGCGG	1 cut(s)	439
Csp6I	GTAC	4 cut(s)	65, 182, 187, 200
CviAII	CATG	1 cut(s)	238
CviJI	RGCY	7 cut(s)	62, 99, 118, 126, 176, 209, 370
CviKI_1	RGCY	7 cut(s)	62, 99, 118, 126, 176, 209, 370
CviQI	GTAC	4 cut(s)	65, 182, 187, 200
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	2 cut(s)	263, 294
DpnII	GATC	2 cut(s)	261, 292
DraI	TTTAAA	1 cut(s)	103
Eco147I	AGGCCT	1 cut(s)	370
EcoRI	GAATTC	1 cut(s)	143
EcoRII	CCWGG	2 cut(s)	91, 370
FaeI	CATG	1 cut(s)	241
FaiI	YATR	3 cut(s)	80, 159, 239
FatI	CATG	1 cut(s)	237
GlaI	GCGC	1 cut(s)	236
GsuI	CTGGAG	1 cut(s)	474
HaeIII	GGCC	2 cut(s)	126, 370
HapII	CCGG	1 cut(s)	119
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	1 cut(s)	241
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HinfI	GANTC	2 cut(s)	242, 474
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	2 cut(s)	37, 458
Hpy166II	GTNNAC	3 cut(s)	200, 202, 407
Hpy188I	TCNGA	2 cut(s)	166, 214
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	3 cut(s)	200, 202, 407
HpyCH4III	ACNGT	4 cut(s)	76, 113, 186, 191
HpyCH4IV	ACGT	1 cut(s)	409
HpyCH4V	TGCA	2 cut(s)	38, 229
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 88
HpyF3I	CTNAG	1 cut(s)	17
HpySE526I	ACGT	1 cut(s)	409
Hsp92II	CATG	1 cut(s)	241
HspAI	GCGC	1 cut(s)	235
KspI	CCGCGG	1 cut(s)	439
Kzo9I	GATC	2 cut(s)	261, 292
LmnI	GCTCC	2 cut(s)	96, 455
LpnPI	CCDG	9 cut(s)	78, 96, 105, 132, 357, 375, 384, 428, 438
MaeII	ACGT	1 cut(s)	409
MaeIII	GTNAC	2 cut(s)	25, 278
MalI	GATC	2 cut(s)	263, 294
MboI	GATC	2 cut(s)	261, 292
MboII	GAAGA	3 cut(s)	237, 344, 349
MluCI	AATT	3 cut(s)	143, 421, 479
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	2 cut(s)	392, 451
MnlI	CCTC	3 cut(s)	52, 79, 331
MseI	TTAA	4 cut(s)	102, 288, 420, 482
MslI	CAYNNNNRTG	1 cut(s)	111
MspA1I	CMGCKG	1 cut(s)	438
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	2 cut(s)	93, 372
MvaI	CCWGG	2 cut(s)	93, 372
MvnI	CGCG	1 cut(s)	438
MwoI	GCNNNNNNNGC	2 cut(s)	68, 88
NdeII	GATC	2 cut(s)	261, 292
NlaIII	CATG	1 cut(s)	241
NlaIV	GGNNCC	1 cut(s)	90
NmuCI	GTSAC	2 cut(s)	25, 278
PceI	AGGCCT	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	474
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PshBI	ATTAAT	1 cut(s)	420
Psp6I	CCWGG	2 cut(s)	91, 370
PspGI	CCWGG	2 cut(s)	91, 370
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	125
PstNI	CAGNNNCTG	1 cut(s)	212
RsaI	GTAC	4 cut(s)	66, 183, 188, 201
RsaNI	GTAC	4 cut(s)	65, 182, 187, 200
RseI	CAYNNNNRTG	1 cut(s)	111
SacII	CCGCGG	1 cut(s)	439
SaqAI	TTAA	4 cut(s)	102, 288, 420, 482
Sau3AI	GATC	2 cut(s)	261, 292
Sau96I	GGNCC	1 cut(s)	125
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	2 cut(s)	93, 372
SetI	ASST	6 cut(s)	90, 101, 211, 342, 401, 412
Sfr303I	CCGCGG	1 cut(s)	439
SgrBI	CCGCGG	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	3 cut(s)	143, 421, 479
SseBI	AGGCCT	1 cut(s)	370
SsiI	CCGC	2 cut(s)	436, 438
SspI	AATATT	2 cut(s)	136, 418
StuI	AGGCCT	1 cut(s)	370
StyD4I	CCNGG	2 cut(s)	91, 370
TaaI	ACNGT	4 cut(s)	76, 113, 186, 191
TaiI	ACGT	1 cut(s)	412
TasI	AATT	3 cut(s)	143, 421, 479
TatI	WGTACW	3 cut(s)	64, 186, 199
TfiI	GAWTC	1 cut(s)	474
Tru1I	TTAA	4 cut(s)	102, 288, 420, 482
Tru9I	TTAA	4 cut(s)	102, 288, 420, 482
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	2 cut(s)	25, 278
Tsp45I	GTSAC	2 cut(s)	25, 278
TspDTI	ATGAA	3 cut(s)	17, 146, 398
TspRI	CASTG	1 cut(s)	196
VspI	ATTAAT	1 cut(s)	420
XapI	RAATTY	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.