Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001514

Physical Location & Seq

Genomic Coordinates Reverse (-)

9585279 .. 9586689

Gene Structure 1411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0118100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTTGAACGGAGAGAAGGTTCCCGGCCGAAACTTCGTGGTGTTCGACTGTGACCTATACGGTCACCAAGAGCCTTGGGAAATATGGGAGGCCTACAAGACCAGAAGACCAAAACTTGAGGCTGAACAAAGACCTTTACTTCTTCACCCAACACAAGAAGATGAGTTCCACGACTCACGCGTATGCAGGAAAGTTGGAACTGGCACCTGGAATGGCGACGACTCCGGCAAGCCAGTGAAATCTTTGGAGACCGGTCGTGTGGTTGGCTTAAAGAAAAGTGAAAGCCAAAAGAAGAGAAAACAACGTGAAGAGGAAGAGGTTCTTGGAAACAATTACGTCTGTGATGATGGAGAAAGCTCGAATAGGGAGCAAGAAGAGTTGCCTGAGCCACAAGCAAAGCGGCAGCGAAGCTTACCATATTTTTATAATGCACCAGTGCCATCAGAAAATGATGCATTCGCAGCTGAACTAGAAGAGTTATTGCCCTGCTTTGAAGAGGATAATCTACCAAAAGAAAATGATGCATTCGCAGCTGAACTAGAAGAGTTATTGCCATGCTTTGGAGAGGATAATCTACCATCAGAAGCTGAAGCAATTGGTTTTCAAGGTCAGGAGAATGTGGGACCTTCCTTTGGAAATGATCATGGAATACTTAATCCGCTGCCGGAGGAATATTTTCTTTTGGAGGAACTAGTTCCTAATGCCAATGTGGAAGCAGCAATGTTTAAGGAGGATCGATTGGCTTTCAGGATGGAGCATACTGGCCAGTGTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004794 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006549 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009097 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016841 GO:0019752 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00290 ko01100 ko01110 ko01130 ko01200 ko01230 map00260 map00290 map01100 map01110 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP Thr_dehydrat_C

Protein Analysis

258

Amino Acids

29.4

Weight (kDa)

4.55

Isoelectric Point (pI)

55.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10050
fragaria_vesca	FvH4_3g30040 FvH4_6g17350 FvH4_6g17350 FvH4_6g17350
malus_domestica	MD11G1153900.v1.1 MD12G1101800.v1.1 MD14G1095900.v1.1
prunus_persica	Prupe.1G149200_v2.0.a1 Prupe.6G116600_v2.0.a1 Prupe.7G044100_v2.0.a1 Prupe.7G122000_v2.0.a1
pyrus_communis	pycom11g12560 pycom11g12570 pycom12g10020
rosa_chinensis	RchiOBHm_Chr3g0471501 RchiOBHm_Chr4g0394271 RchiOBHm_Chr5g0055901
rosa_laevigata	RLG00000009710 RLG00000024173 RLG00000035019 RLG00000035020
rosa_multiflora	Rmu_co8179734.1_g000001 Rmu_sc0006582.1_g000005 Rmu_sc0006749.1_g000006
rosa_roxburghii	Rroxscaffold_1G00024450 Rroxscaffold_1G00024460 Rroxscaffold_6G00409900
rosa_rugosa	Rorug03G0118100 Rorug03G0118200 Rorug03G0118200 Rorug03G0118200 Rorug03G0368200.1 Rorug05G0295400
rosa_samantha	Rh3AG168100 Rh3BG193600 Rh3CG184100 Rh3DG181900 Rh4AG051200 Rh4BG048200 Rh4BG048400 Rh4CG055000 Rh4DG048100 Rh5AG366800 Rh5BG376900 Rh5CG400200 Rh5DG390400 Rh6BG174900
rosa_wichuraiana	Rw3G015840 Rw4G004080 Rw5G034380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	426
AccB1I	GGYRCC	1 cut(s)	203
AccB7I	CCANNNNNTGG	1 cut(s)	560
AccII	CGCG	1 cut(s)	180
AciI	CCGC	2 cut(s)	400, 659
AclWI	GGATC	1 cut(s)	741
AcoI	YGGCCR	2 cut(s)	25, 763
AcuI	CTGAAG	1 cut(s)	609
AfiI	CCNNNNNNNGG	2 cut(s)	560, 632
AflIII	ACRYGT	1 cut(s)	178
AgeI	ACCGGT	1 cut(s)	251
AgsI	TTSAA	3 cut(s)	7, 494, 605
AhlI	ACTAGT	1 cut(s)	691
AjnI	CCWGG	1 cut(s)	206
AjuI	GAANNNNNNNTTGG	2 cut(s)	306, 338
AloI	GAACNNNNNNTCC	1 cut(s)	35
AluBI	AGCT	5 cut(s)	357, 411, 464, 533, 587
AluI	AGCT	5 cut(s)	357, 411, 464, 533, 587
Alw26I	GTCTC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	741
AlwNI	CAGNNNCTG	1 cut(s)	587
AoxI	GGCC	3 cut(s)	25, 90, 763
ApeKI	GCWGC	5 cut(s)	403, 461, 530, 661, 716
AsiGI	ACCGGT	1 cut(s)	251
Asp700I	GAANNNNTTC	3 cut(s)	318, 675, 693
AspS9I	GGNCC	1 cut(s)	623
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	2 cut(s)	56, 137
AvaII	GGWCC	1 cut(s)	623
BalI	TGGCCA	1 cut(s)	765
BanI	GGYRCC	1 cut(s)	203
BbsI	GAAGAC	1 cut(s)	112
BbvI	GCAGC	5 cut(s)	415, 473, 542, 648, 728
BccI	CCATC	4 cut(s)	341, 448, 586, 745
BciT130I	CCWGG	1 cut(s)	208
BclI	TGATCA	1 cut(s)	640
BcnI	CCSGG	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	242
BcuI	ACTAGT	1 cut(s)	691
BfaI	CTAG	3 cut(s)	470, 539, 692
BisI	GCNGC	6 cut(s)	401, 404, 462, 531, 662, 717
BlsI	GCNGC	6 cut(s)	402, 405, 463, 532, 663, 718
Bme1390I	CCNGG	2 cut(s)	24, 208
Bme18I	GGWCC	1 cut(s)	623
BmgT120I	GGNCC	1 cut(s)	623
BmiI	GGNNCC	3 cut(s)	21, 205, 624
BmrFI	CCNGG	2 cut(s)	24, 208
BmsI	GCATC	2 cut(s)	442, 511
BpiI	GAAGAC	1 cut(s)	112
Bpu10I	CCTNAGC	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	24
Bsa29I	ATCGAT	1 cut(s)	736
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	74
BsaWI	WCCGGW	1 cut(s)	251
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	560, 632
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	5 cut(s)	205, 233, 434, 766, 766
Bse3DI	GCAATG	1 cut(s)	726
BseBI	CCWGG	1 cut(s)	208
BseCI	ATCGAT	1 cut(s)	736
BseDI	CCNNGG	1 cut(s)	74
BseGI	GGATG	1 cut(s)	756
BseLI	CCNNNNNNNGG	2 cut(s)	560, 632
BseMI	GCAATG	1 cut(s)	726
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	5 cut(s)	205, 233, 434, 766, 766
BseX3I	CGGCCG	1 cut(s)	25
BseXI	GCAGC	5 cut(s)	415, 473, 542, 648, 728
Bsh1236I	CGCG	1 cut(s)	180
Bsh1285I	CGRYCG	2 cut(s)	28, 256
BshFI	GGCC	3 cut(s)	27, 92, 765
BshNI	GGYRCC	1 cut(s)	203
BshTI	ACCGGT	1 cut(s)	251
BshVI	ATCGAT	1 cut(s)	736
BsiEI	CGRYCG	2 cut(s)	28, 256
BsiSI	CCGG	4 cut(s)	24, 225, 252, 665
BslFI	GGGAC	1 cut(s)	636
BslI	CCNNNNNNNGG	2 cut(s)	560, 632
BsmAI	GTCTC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	636
BsmI	GAATGC	2 cut(s)	455, 524
BsnI	GGCC	3 cut(s)	27, 92, 765
Bso31I	GGTCTC	1 cut(s)	242
Bsp143I	GATC	2 cut(s)	640, 733
BspACI	CCGC	2 cut(s)	400, 659
BspANI	GGCC	3 cut(s)	27, 92, 765
BspCNI	CTCAG	1 cut(s)	376
BspDI	ATCGAT	1 cut(s)	736
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	3 cut(s)	21, 205, 624
BspPI	GGATC	1 cut(s)	741
BspT107I	GGYRCC	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	726
BsrFI	RCCGGY	1 cut(s)	251
BsrI	ACTGG	5 cut(s)	205, 233, 434, 766, 766
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	74
BssMI	GATC	2 cut(s)	640, 733
BssT1I	CCWWGG	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	208
Bst4CI	ACNGT	2 cut(s)	50, 62
Bst6I	CTCTTC	7 cut(s)	287, 303, 309, 369, 468, 489, 537
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	1 cut(s)	384
BstEII	GGTNACC	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	756
BstFNI	CGCG	1 cut(s)	180
BstKTI	GATC	2 cut(s)	643, 736
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	2 cut(s)	640, 733
BstMCI	CGRYCG	2 cut(s)	28, 256
BstMWI	GCNNNNNNNGC	2 cut(s)	461, 530
BstNI	CCWGG	1 cut(s)	208
BstPI	GGTNACC	1 cut(s)	62
BstSCI	CCNGG	2 cut(s)	22, 206
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	5 cut(s)	415, 473, 542, 648, 728
BstV2I	GAAGAC	1 cut(s)	112
BstZI	CGGCCG	1 cut(s)	25
Bsu15I	ATCGAT	1 cut(s)	736
BsuRI	GGCC	3 cut(s)	27, 92, 765
BsuTUI	ATCGAT	1 cut(s)	736
BtsCI	GGATG	1 cut(s)	756
BtsIMutI	CAGTG	3 cut(s)	240, 441, 773
Cac8I	GCNNGC	1 cut(s)	230
CaiI	CAGNNNCTG	1 cut(s)	587
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	623
ClaI	ATCGAT	1 cut(s)	736
CspAI	ACCGGT	1 cut(s)	251
CviAII	CATG	2 cut(s)	555, 644
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	2 cut(s)	642, 735
DpnII	GATC	2 cut(s)	640, 733
EaeI	YGGCCR	2 cut(s)	25, 763
EagI	CGGCCG	1 cut(s)	25
Eam1104I	CTCTTC	7 cut(s)	287, 303, 309, 369, 468, 489, 537
EarI	CTCTTC	7 cut(s)	287, 303, 309, 369, 468, 489, 537
EclXI	CGGCCG	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	74
Eco147I	AGGCCT	1 cut(s)	92
Eco31I	GGTCTC	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	623
Eco52I	CGGCCG	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	609
Eco91I	GGTNACC	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	623
EcoO65I	GGTNACC	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	74
EcoT22I	ATGCAT	2 cut(s)	457, 526
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	2 cut(s)	558, 647
FaiI	YATR	8 cut(s)	58, 85, 184, 418, 426, 556, 645, 759
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FaqI	GGGAC	1 cut(s)	636
FatI	CATG	2 cut(s)	554, 643
FbaI	TGATCA	1 cut(s)	640
Fnu4HI	GCNGC	6 cut(s)	401, 404, 462, 531, 662, 717
FokI	GGATG	1 cut(s)	763
Fsp4HI	GCNGC	6 cut(s)	401, 404, 462, 531, 662, 717
FspBI	CTAG	3 cut(s)	470, 539, 692
GluI	GCNGC	6 cut(s)	401, 404, 462, 531, 662, 717
HaeIII	GGCC	3 cut(s)	27, 92, 765
HapII	CCGG	4 cut(s)	24, 225, 252, 665
Hin1II	CATG	2 cut(s)	558, 647
HindIII	AAGCTT	1 cut(s)	409
HinfI	GANTC	2 cut(s)	173, 221
HpaII	CCGG	4 cut(s)	24, 225, 252, 665
HphI	GGTGA	2 cut(s)	56, 137
Hpy188I	TCNGA	2 cut(s)	445, 583
Hpy188III	TCNNGA	2 cut(s)	611, 748
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	2 cut(s)	10, 636
HpyCH4III	ACNGT	2 cut(s)	50, 62
HpyCH4IV	ACGT	2 cut(s)	304, 336
HpyCH4V	TGCA	4 cut(s)	186, 431, 455, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	461, 530
HpyF3I	CTNAG	1 cut(s)	384
HpySE526I	ACGT	2 cut(s)	304, 336
Hsp92II	CATG	2 cut(s)	558, 647
Ksp22I	TGATCA	1 cut(s)	640
Kzo9I	GATC	2 cut(s)	640, 733
LmnI	GCTCC	2 cut(s)	367, 754
Lsp1109I	GCAGC	5 cut(s)	415, 473, 542, 648, 728
LweI	GCATC	2 cut(s)	442, 511
MaeI	CTAG	3 cut(s)	470, 539, 692
MaeII	ACGT	2 cut(s)	304, 336
MaeIII	GTNAC	2 cut(s)	50, 62
MalI	GATC	2 cut(s)	642, 735
MboI	GATC	2 cut(s)	640, 733
MfeI	CAATTG	1 cut(s)	594
MlsI	TGGCCA	1 cut(s)	765
MluCI	AATT	2 cut(s)	331, 594
MluI	ACGCGT	1 cut(s)	178
MluNI	TGGCCA	1 cut(s)	765
MlyI	GAGTC	2 cut(s)	167, 215
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	9 cut(s)	82, 112, 304, 310, 490, 559, 661, 679, 724
Mox20I	TGGCCA	1 cut(s)	765
Mph1103I	ATGCAT	2 cut(s)	457, 526
MroXI	GAANNNNTTC	3 cut(s)	318, 675, 693
MscI	TGGCCA	1 cut(s)	765
MseI	TTAA	3 cut(s)	269, 654, 726
MslI	CAYNNNNRTG	1 cut(s)	181
Msp20I	TGGCCA	1 cut(s)	765
MspA1I	CMGCKG	3 cut(s)	464, 533, 661
MspI	CCGG	4 cut(s)	24, 225, 252, 665
MspR9I	CCNGG	2 cut(s)	24, 208
MunI	CAATTG	1 cut(s)	594
Mva1269I	GAATGC	2 cut(s)	455, 524
MvaI	CCWGG	1 cut(s)	208
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	2 cut(s)	461, 530
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	2 cut(s)	640, 733
NlaIII	CATG	2 cut(s)	558, 647
NlaIV	GGNNCC	3 cut(s)	21, 205, 624
NmuCI	GTSAC	2 cut(s)	50, 62
NsiI	ATGCAT	2 cut(s)	457, 526
PceI	AGGCCT	1 cut(s)	92
PcsI	WCGNNNNNNNCGW	2 cut(s)	42, 177
PctI	GAATGC	2 cut(s)	455, 524
PdmI	GAANNNNTTC	3 cut(s)	318, 675, 693
PflMI	CCANNNNNTGG	1 cut(s)	560
PinAI	ACCGGT	1 cut(s)	251
PkrI	GCNGC	6 cut(s)	402, 405, 463, 532, 663, 718
PleI	GAGTC	2 cut(s)	167, 215
PpsI	GAGTC	2 cut(s)	167, 215
PpuMI	RGGWCCY	1 cut(s)	623
PsiI	TTATAA	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	623
Psp6I	CCWGG	1 cut(s)	206
PspEI	GGTNACC	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	3 cut(s)	21, 205, 624
PspPI	GGNCC	1 cut(s)	623
PspPPI	RGGWCCY	1 cut(s)	623
PstNI	CAGNNNCTG	1 cut(s)	587
PvuII	CAGCTG	2 cut(s)	464, 533
RseI	CAYNNNNRTG	1 cut(s)	181
SaqAI	TTAA	3 cut(s)	269, 654, 726
SatI	GCNGC	6 cut(s)	401, 404, 462, 531, 662, 717
Sau3AI	GATC	2 cut(s)	640, 733
Sau96I	GGNCC	1 cut(s)	623
SchI	GAGTC	2 cut(s)	167, 215
ScrFI	CCNGG	2 cut(s)	24, 208
SfaNI	GCATC	2 cut(s)	442, 511
SinI	GGWCC	1 cut(s)	623
SmiMI	CAYNNNNRTG	1 cut(s)	181
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SpeI	ACTAGT	1 cut(s)	691
Sse9I	AATT	2 cut(s)	331, 594
SseBI	AGGCCT	1 cut(s)	92
SsiI	CCGC	2 cut(s)	400, 659
SspI	AATATT	1 cut(s)	674
SspMI	CTAG	3 cut(s)	470, 539, 692
StuI	AGGCCT	1 cut(s)	92
StyD4I	CCNGG	2 cut(s)	22, 206
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	2 cut(s)	50, 62
TaiI	ACGT	2 cut(s)	307, 339
TaqI	TCGA	3 cut(s)	45, 359, 736
TasI	AATT	2 cut(s)	331, 594
TauI	GCSGC	1 cut(s)	403
Tru1I	TTAA	3 cut(s)	269, 654, 726
Tru9I	TTAA	3 cut(s)	269, 654, 726
TscAI	CASTG	3 cut(s)	240, 441, 773
TseFI	GTSAC	2 cut(s)	50, 62
TseI	GCWGC	5 cut(s)	403, 461, 530, 661, 716
Tsp45I	GTSAC	2 cut(s)	50, 62
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	3 cut(s)	240, 441, 773
Van91I	CCANNNNNTGG	1 cut(s)	560
VpaK11BI	GGWCC	1 cut(s)	623
XmnI	GAANNNNTTC	3 cut(s)	318, 675, 693
XspI	CTAG	3 cut(s)	470, 539, 692
Zsp2I	ATGCAT	2 cut(s)	457, 526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.