Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0004362

Physical Location & Seq

Genomic Coordinates Forward (+)

29234846 .. 29236066

Gene Structure 1221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1204200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTGTTGGATTTTAGATGGTAGTGAGGAGCTCACACGCGAGGGGTGCGGTGTTACCATGTTAGAATATAAATCAATAGTATGTCCTCTTCGTTTGTTTTCAATTTTGAAATATACGAGGAGGCGCGACGTAGACTTAAGACTAGTCTTTCTAAAACAGTACTTGGCTCACATCCTCAAAGTTAGACCTTTTGAAGCTCAACTTGAGCTGCTCAACTCAACAAGTATATCAATAGTAAGAACTAACTATTGTCTGATCTACTCACAGGAGTCGAGCCTCCCGGACATATTCAAGAAGAATAGTTGGGTTCCTTCAAATGCTAACACAAGAATTTGTAGTGAAAACACCGAACGAGTCTCTAATCTGGTTGAATCTAGCACAGCTCGACCATATGCCTTTGACATGGACCCGCTTCGCGATGAAGTGATGCAAGAGCAGAATCAGCCAGACAACGCCATGGTAGAAATGCCTATGCAAAAGTCTGTTGAGAGTTCTTCCTCTTTCGCTGCATCGGGGAGTTCCCATGGCACTATGGAGTTTTTACAGCCAGATGAAGTTTCTATTCCTTCTATCCGTGCTACCCTTGTTCCGTCGTATAATCGGAGTCAGAGGATAAAGTTGTTACACAAAGATGAAACTTTGCAGCTTTGCTATAGGCATATGGAATTGCGGTTTGGAATCAGCGGAAAGTATTCTGATCAAGATGGCCGTCCACTATTGGATATTGTTTGTTACGCATCACAAAATTTGTGCAAAGTTCTTGATGCATGTGATGGCGTTGTACAAAAGTTTAAGGATTCTGGTAGCAGCTCCGAATGGAAGCCTGCTGTGATCCAAAAGGACCGTACTTATACAGTGAAATTACACATACAGCACACCACAGAGATATATCAAAAAGAGCCTTGTGGCGCAGAGCAGAGGCTCGTCACCAAGTTTGATGCTTCAGAACTTAGCACCCACTTAAAACCGCGGACTTTTGTCGATGCATTCTTCTCCTTGGAACCGTATGACTATCAGCAGAGTGCAGGCATTAGGTGGGTGGCAAAGAAATTGATTCTTCTTCCCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008408 GO:0009380 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0030312 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:1901360 GO:1902494 GO:1905347 GO:1905348 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

357

Amino Acids

40.75

Weight (kDa)

6.67

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74390 AT1G74390 AT1G74390 AT1G74390 AT5G07710 AT5G61390
fragaria_vesca	FvH4_5g14590 FvH4_5g14590 FvH4_5g14590
malus_domestica	MD06G1197200.v1.1 MD14G1204200.v1.1 MD14G1204300.v1.1 MD14G1204400.v1.1
prunus_persica	Prupe.5G197500_v2.0.a1 Prupe.5G197500_v2.0.a1 Prupe.5G197700_v2.0.a1
pyrus_communis	pycom06g17400 pycom14g16890
rosa_chinensis	RchiOBHm_Chr7g0181951 RchiOBHm_Chr7g0181981
rosa_laevigata	RLG00000005164
rosa_roxburghii	Rroxscaffold_3G00271650
rosa_rugosa	Rorug06G0444900
rosa_samantha	Rh7AG047200 Rh7BG046800 Rh7BG047100 Rh7CG047300 Rh7CG047400 Rh7DG046300 Rh7DG046400
rosa_wichuraiana	Rw0G019670 Rw7G003910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	4 cut(s)	39, 126, 417, 970
AciI	CCGC	6 cut(s)	48, 410, 670, 684, 968, 970
AclWI	GGATC	1 cut(s)	826
AcoI	YGGCCR	1 cut(s)	706
AcsI	RAATTY	2 cut(s)	330, 745
AcuI	CTGAAG	1 cut(s)	927
AfaI	GTAC	3 cut(s)	161, 783, 847
AflII	CTTAAG	1 cut(s)	136
AgsI	TTSAA	6 cut(s)	102, 109, 194, 292, 315, 371
AhlI	ACTAGT	1 cut(s)	142
AjuI	GAANNNNNNNTTGG	2 cut(s)	657, 689
AluBI	AGCT	6 cut(s)	31, 197, 208, 383, 646, 810
AluI	AGCT	6 cut(s)	31, 197, 208, 383, 646, 810
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	361
AlwI	GGATC	1 cut(s)	826
AoxI	GGCC	1 cut(s)	706
ApeKI	GCWGC	4 cut(s)	208, 506, 643, 807
ApoI	RAATTY	2 cut(s)	330, 745
Asp700I	GAANNNNTTC	1 cut(s)	691
AspLEI	GCGC	2 cut(s)	126, 911
AspS9I	GGNCC	2 cut(s)	406, 841
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	919
AvaII	GGWCC	2 cut(s)	406, 841
BanII	GRGCYC	1 cut(s)	33
BarI	GAAGNNNNNNTAC	2 cut(s)	72, 104
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	4 cut(s)	195, 493, 655, 819
BccI	CCATC	3 cut(s)	11, 698, 767
BceAI	ACGGC	1 cut(s)	693
BclI	TGATCA	1 cut(s)	697
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	361
BcuI	ACTAGT	1 cut(s)	142
BfaI	CTAG	2 cut(s)	143, 375
BfmI	CTRYAG	1 cut(s)	652
BfrI	CTTAAG	1 cut(s)	136
BisI	GCNGC	4 cut(s)	209, 507, 644, 808
BlsI	GCNGC	4 cut(s)	210, 508, 645, 809
BmcAI	AGTACT	1 cut(s)	161
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	2 cut(s)	406, 841
BmgT120I	GGNCC	2 cut(s)	406, 841
BmiI	GGNNCC	3 cut(s)	309, 408, 1002
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	6 cut(s)	417, 518, 746, 754, 928, 973
BoxI	GACNNNNGTC	1 cut(s)	977
BpuEI	CTTGAG	1 cut(s)	224
BpuMI	CCSGG	1 cut(s)	281
BsaJI	CCNNGG	4 cut(s)	456, 523, 968, 996
BseDI	CCNNGG	4 cut(s)	456, 523, 968, 996
BseGI	GGATG	1 cut(s)	171
BseRI	GAGGAG	2 cut(s)	41, 133
BseXI	GCAGC	4 cut(s)	195, 493, 655, 819
BsgI	GTGCAG	1 cut(s)	1044
Bsh1236I	CGCG	4 cut(s)	39, 126, 417, 970
BshFI	GGCC	1 cut(s)	708
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	281
BsmAI	GTCTC	1 cut(s)	361
BsmI	GAATGC	1 cut(s)	986
BsnI	GGCC	1 cut(s)	708
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp1407I	TGTACA	1 cut(s)	781
Bsp143I	GATC	3 cut(s)	255, 697, 831
Bsp19I	CCATGG	2 cut(s)	456, 523
Bsp68I	TCGCGA	1 cut(s)	417
BspACI	CCGC	6 cut(s)	48, 410, 670, 684, 968, 970
BspANI	GGCC	1 cut(s)	708
BspFNI	CGCG	4 cut(s)	39, 126, 417, 970
BspLI	GGNNCC	3 cut(s)	309, 408, 1002
BspPI	GGATC	1 cut(s)	826
BspTI	CTTAAG	1 cut(s)	136
BsrGI	TGTACA	1 cut(s)	781
BssECI	CCNNGG	4 cut(s)	456, 523, 968, 996
BssMI	GATC	3 cut(s)	255, 697, 831
BssT1I	CCWWGG	3 cut(s)	456, 523, 996
Bst4CI	ACNGT	4 cut(s)	159, 845, 856, 1005
Bst6I	CTCTTC	1 cut(s)	93
BstAFI	CTTAAG	1 cut(s)	136
BstAUI	TGTACA	1 cut(s)	781
BstC8I	GCNNGC	2 cut(s)	825, 1027
BstDEI	CTNAG	1 cut(s)	950
BstDSI	CCRYGG	3 cut(s)	456, 523, 968
BstF5I	GGATG	1 cut(s)	171
BstFNI	CGCG	4 cut(s)	39, 126, 417, 970
BstHHI	GCGC	2 cut(s)	126, 911
BstKTI	GATC	3 cut(s)	258, 700, 834
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	3 cut(s)	255, 697, 831
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 442
BstNSI	RCATGY	1 cut(s)	771
BstPAI	GACNNNNGTC	1 cut(s)	977
BstSCI	CCNGG	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	652
BstUI	CGCG	4 cut(s)	39, 126, 417, 970
BstV1I	GCAGC	4 cut(s)	195, 493, 655, 819
BsuRI	GGCC	1 cut(s)	708
BtgI	CCRYGG	3 cut(s)	456, 523, 968
BtgZI	GCGATG	1 cut(s)	432
BtsCI	GGATG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	861
BtuMI	TCGCGA	1 cut(s)	417
Cac8I	GCNNGC	2 cut(s)	825, 1027
CfoI	GCGC	2 cut(s)	126, 911
Cfr13I	GGNCC	2 cut(s)	406, 841
Cfr42I	CCGCGG	1 cut(s)	971
Csp6I	GTAC	3 cut(s)	160, 782, 846
CviAII	CATG	5 cut(s)	58, 403, 457, 524, 768
CviQI	GTAC	3 cut(s)	160, 782, 846
DdeI	CTNAG	1 cut(s)	950
DpnI	GATC	3 cut(s)	257, 699, 833
DpnII	GATC	3 cut(s)	255, 697, 831
EaeI	YGGCCR	1 cut(s)	706
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Ecl136II	GAGCTC	1 cut(s)	31
Eco130I	CCWWGG	3 cut(s)	456, 523, 996
Eco24I	GRGCYC	1 cut(s)	33
Eco47I	GGWCC	2 cut(s)	406, 841
Eco53kI	GAGCTC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	927
EcoICRI	GAGCTC	1 cut(s)	31
EcoT14I	CCWWGG	3 cut(s)	456, 523, 996
EcoT22I	ATGCAT	2 cut(s)	769, 988
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	3 cut(s)	456, 523, 996
FaeI	CATG	5 cut(s)	61, 406, 460, 527, 771
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FatI	CATG	5 cut(s)	57, 402, 456, 523, 767
FauI	CCCGC	1 cut(s)	417
FauNDI	CATATG	2 cut(s)	391, 660
FbaI	TGATCA	1 cut(s)	697
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	4 cut(s)	209, 507, 644, 808
FokI	GGATG	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	4 cut(s)	209, 507, 644, 808
FspBI	CTAG	2 cut(s)	143, 375
GlaI	GCGC	2 cut(s)	125, 910
GluI	GCNGC	4 cut(s)	209, 507, 644, 808
HaeIII	GGCC	1 cut(s)	708
HapII	CCGG	1 cut(s)	281
HhaI	GCGC	2 cut(s)	126, 911
Hin1II	CATG	5 cut(s)	61, 406, 460, 527, 771
Hin6I	GCGC	2 cut(s)	124, 909
HinP1I	GCGC	2 cut(s)	124, 909
HinfI	GANTC	8 cut(s)	269, 354, 371, 439, 604, 678, 797, 1054
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	1 cut(s)	919
Hpy166II	GTNNAC	2 cut(s)	133, 713
Hpy188I	TCNGA	6 cut(s)	255, 603, 609, 697, 814, 946
Hpy188III	TCNNGA	4 cut(s)	292, 416, 701, 761
Hpy8I	GTNNAC	2 cut(s)	133, 713
Hpy99I	CGWCG	2 cut(s)	131, 595
HpyAV	CCTTC	2 cut(s)	321, 576
HpyCH4III	ACNGT	4 cut(s)	159, 845, 856, 1005
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	8 cut(s)	430, 475, 509, 643, 753, 767, 986, 1025
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 442
HpyF3I	CTNAG	1 cut(s)	950
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	5 cut(s)	61, 406, 460, 527, 771
HspAI	GCGC	2 cut(s)	124, 909
Ksp22I	TGATCA	1 cut(s)	697
KspI	CCGCGG	1 cut(s)	971
Kzo9I	GATC	3 cut(s)	255, 697, 831
LmnI	GCTCC	2 cut(s)	28, 815
LpnPI	CCDG	8 cut(s)	251, 294, 350, 459, 561, 786, 837, 1011
Lsp1109I	GCAGC	4 cut(s)	195, 493, 655, 819
LweI	GCATC	6 cut(s)	417, 518, 746, 754, 928, 973
MaeI	CTAG	2 cut(s)	143, 375
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	4 cut(s)	52, 621, 731, 925
MalI	GATC	3 cut(s)	257, 699, 833
MboI	GATC	3 cut(s)	255, 697, 831
MboII	GAAGA	6 cut(s)	80, 307, 486, 982, 1049, 1052
MfeI	CAATTG	1 cut(s)	1066
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	7 cut(s)	102, 330, 665, 745, 860, 1049, 1066
MlyI	GAGTC	3 cut(s)	278, 363, 613
Mph1103I	ATGCAT	2 cut(s)	769, 988
MroXI	GAANNNNTTC	1 cut(s)	691
MseI	TTAA	3 cut(s)	137, 792, 962
MslI	CAYNNNNRTG	1 cut(s)	630
MspA1I	CMGCKG	2 cut(s)	684, 970
MspCI	CTTAAG	1 cut(s)	136
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	281
MunI	CAATTG	1 cut(s)	1066
Mva1269I	GAATGC	1 cut(s)	986
MvnI	CGCG	4 cut(s)	39, 126, 417, 970
MwoI	GCNNNNNNNGC	2 cut(s)	45, 442
NciI	CCSGG	1 cut(s)	281
NcoI	CCATGG	2 cut(s)	456, 523
NdeI	CATATG	2 cut(s)	391, 660
NdeII	GATC	3 cut(s)	255, 697, 831
NlaIII	CATG	5 cut(s)	61, 406, 460, 527, 771
NlaIV	GGNNCC	3 cut(s)	309, 408, 1002
NmuCI	GTSAC	1 cut(s)	925
NruI	TCGCGA	1 cut(s)	417
NsiI	ATGCAT	2 cut(s)	769, 988
NspI	RCATGY	1 cut(s)	771
PctI	GAATGC	1 cut(s)	986
PdmI	GAANNNNTTC	1 cut(s)	691
PfeI	GAWTC	5 cut(s)	371, 439, 678, 797, 1054
PfoI	TCCNGGA	1 cut(s)	279
PkrI	GCNGC	4 cut(s)	210, 508, 645, 809
PleI	GAGTC	3 cut(s)	277, 362, 612
PpsI	GAGTC	3 cut(s)	277, 362, 612
PshAI	GACNNNNGTC	1 cut(s)	977
Psp124BI	GAGCTC	1 cut(s)	33
PspN4I	GGNNCC	3 cut(s)	309, 408, 1002
PspPI	GGNCC	2 cut(s)	406, 841
RruI	TCGCGA	1 cut(s)	417
RsaI	GTAC	3 cut(s)	161, 783, 847
RsaNI	GTAC	3 cut(s)	160, 782, 846
RseI	CAYNNNNRTG	1 cut(s)	630
SacI	GAGCTC	1 cut(s)	33
SacII	CCGCGG	1 cut(s)	971
SaqAI	TTAA	3 cut(s)	137, 792, 962
SatI	GCNGC	4 cut(s)	209, 507, 644, 808
Sau3AI	GATC	3 cut(s)	255, 697, 831
Sau96I	GGNCC	2 cut(s)	406, 841
ScaI	AGTACT	1 cut(s)	161
SchI	GAGTC	3 cut(s)	278, 363, 613
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	9 cut(s)	33, 132, 190, 199, 210, 385, 648, 812, 1037
SfaNI	GCATC	6 cut(s)	417, 518, 746, 754, 928, 973
SfcI	CTRYAG	1 cut(s)	652
Sfr303I	CCGCGG	1 cut(s)	971
SgrBI	CCGCGG	1 cut(s)	971
SinI	GGWCC	2 cut(s)	406, 841
SmiMI	CAYNNNNRTG	1 cut(s)	630
SmlI	CTYRAG	2 cut(s)	136, 203
SmoI	CTYRAG	2 cut(s)	136, 203
SpeI	ACTAGT	1 cut(s)	142
Sse9I	AATT	7 cut(s)	102, 330, 665, 745, 860, 1049, 1066
SsiI	CCGC	6 cut(s)	48, 410, 670, 684, 968, 970
SspMI	CTAG	2 cut(s)	143, 375
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	3 cut(s)	456, 523, 996
TaaI	ACNGT	4 cut(s)	159, 845, 856, 1005
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	3 cut(s)	272, 385, 981
TasI	AATT	7 cut(s)	102, 330, 665, 745, 860, 1049, 1066
TatI	WGTACW	2 cut(s)	159, 781
TfiI	GAWTC	5 cut(s)	371, 439, 678, 797, 1054
Tru1I	TTAA	3 cut(s)	137, 792, 962
Tru9I	TTAA	3 cut(s)	137, 792, 962
TscAI	CASTG	1 cut(s)	861
TseFI	GTSAC	1 cut(s)	925
TseI	GCWGC	4 cut(s)	208, 506, 643, 807
Tsp45I	GTSAC	1 cut(s)	925
TspDTI	ATGAA	3 cut(s)	435, 567, 648
TspGWI	ACGGA	2 cut(s)	563, 579
TspRI	CASTG	1 cut(s)	861
Vha464I	CTTAAG	1 cut(s)	136
VpaK11BI	GGWCC	2 cut(s)	406, 841
XapI	RAATTY	2 cut(s)	330, 745
XceI	RCATGY	1 cut(s)	771
XmiI	GTMKAC	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	691
XspI	CTAG	2 cut(s)	143, 375
ZrmI	AGTACT	1 cut(s)	161
Zsp2I	ATGCAT	2 cut(s)	769, 988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.