Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004362

Physical Location & Seq

Genomic Coordinates Reverse (-)

63996615 .. 63999607

Gene Structure 2993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00271650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAACATAAATATTTCAAATCAAACAGGGGACAATCATCCAATAACATCTCTTAGGACTGAGACCACACAAGAAGTCTCTAATTTGCTTGAGACTGTCGAGTCCAGCACAAATCGACCAGATCCTTTTGACATGGGCCCACTTATCAATGAAGTGAAGAATGAGTTAGATCAGCAAGACGTCAACATGGTGGAAACACCTGCACAAGAATCTCCCAACAGTTCTCTCAATGCTTCTGTGACCAACAACTGTAATGCCACCATGGATTTTTTACAGCTCGATCAAGTTTTCATTCCTTATATCAATGCTTCGCTTGTTCCATTGTATCGTGGGAGTCAAAGGATAAAGTTATTACACAAAGATGTCACTTTGCAGCTTTGCTGCAGTCATATGAAATTGCGGTTTGGAATCAATACGAAGTTTTTTGATCATGCTGGCCGACCACGACTGAATATTGTCTTTGATGCACCACCAAAATTATGTGAAGTTCTTGATGCATGCGATGGCCTTGCAAAGAAGTTGTCTTTGGACTCTGGAAGTAGCTCTGAATGGAGGCCTGTTGTGATCCGCAAACAGGGCTTCTACAACTACCCTACTGTGAGATTGCACATACAAACTGCAGTATGCGGGGACATTGCAATCTACGCCACAGAGATATATCAAAGAGACCCCTCTGGCACCGAGCAAAGGCTAGTCTTCTCTAAATTTGATGCTTCAGAACTTGGTGCCTTGTTCACCCGAGGGATGTTTATGGATGTGTTCTTCTCTTTGGATACATATGACTATCAGCAGAGTGCAGGCATTAGGTTGGTGGCAAAGAAACTGATTATTCATTCCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008408 GO:0009380 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0030312 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:1901360 GO:1902494 GO:1905347 GO:1905348 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

280

Amino Acids

31.48

Weight (kDa)

5.53

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74390 AT1G74390 AT1G74390 AT1G74390 AT5G07710 AT5G61390
fragaria_vesca	FvH4_5g14590 FvH4_5g14590 FvH4_5g14590
malus_domestica	MD06G1197200.v1.1 MD14G1204200.v1.1 MD14G1204300.v1.1 MD14G1204400.v1.1
prunus_persica	Prupe.5G197500_v2.0.a1 Prupe.5G197500_v2.0.a1 Prupe.5G197700_v2.0.a1
pyrus_communis	pycom06g17400 pycom14g16890
rosa_chinensis	RchiOBHm_Chr7g0181951 RchiOBHm_Chr7g0181981
rosa_laevigata	RLG00000005164
rosa_roxburghii	Rroxscaffold_3G00271650
rosa_rugosa	Rorug06G0444900
rosa_samantha	Rh7AG047200 Rh7BG046800 Rh7BG047100 Rh7CG047300 Rh7CG047400 Rh7DG046300 Rh7DG046400
rosa_wichuraiana	Rw0G019670 Rw7G003910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	208
AasI	GACNNNNNNGTC	1 cut(s)	100
AatII	GACGTC	1 cut(s)	183
Acc36I	ACCTGC	1 cut(s)	208
AccB1I	GGYRCC	2 cut(s)	677, 725
AciI	CCGC	3 cut(s)	400, 568, 627
AclWI	GGATC	2 cut(s)	116, 559
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	1 cut(s)	704
AcuI	CTGAAG	1 cut(s)	699
AcyI	GRCGYC	1 cut(s)	180
AfiI	CCNNNNNNNGG	2 cut(s)	574, 687
AgsI	TTSAA	1 cut(s)	18
AjuI	GAANNNNNNNTTGG	2 cut(s)	509, 541
AluBI	AGCT	3 cut(s)	277, 376, 543
AluI	AGCT	3 cut(s)	277, 376, 543
Alw26I	GTCTC	4 cut(s)	56, 82, 86, 660
AlwI	GGATC	2 cut(s)	116, 559
Ama87I	CYCGRG	1 cut(s)	738
AoxI	GGCC	4 cut(s)	136, 436, 505, 554
ApaI	GGGCCC	1 cut(s)	140
ApeKI	GCWGC	2 cut(s)	373, 381
ApoI	RAATTY	1 cut(s)	704
ArsI	GACNNNNNNTTYG	2 cut(s)	506, 538
AspS9I	GGNCC	2 cut(s)	136, 137
AsuHPI	GGTGA	1 cut(s)	727
AvaI	CYCGRG	1 cut(s)	738
BaeGI	GKGCMC	1 cut(s)	140
BanI	GGYRCC	2 cut(s)	677, 725
BanII	GRGCYC	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	688
BbvI	GCAGC	2 cut(s)	368, 385
BccI	CCATC	1 cut(s)	497
BcgI	CGANNNNNNTGC	2 cut(s)	491, 525
BciVI	GTATCC	1 cut(s)	766
BclI	TGATCA	1 cut(s)	427
BcoDI	GTCTC	4 cut(s)	56, 82, 86, 660
BfaI	CTAG	1 cut(s)	692
BfmI	CTRYAG	2 cut(s)	382, 618
BfuAI	ACCTGC	1 cut(s)	208
BfuI	GTATCC	1 cut(s)	766
BisI	GCNGC	2 cut(s)	374, 382
BlsI	GCNGC	2 cut(s)	375, 383
BmeT110I	CYCGRG	1 cut(s)	738
BmgT120I	GGNCC	2 cut(s)	136, 137
BmiI	GGNNCC	3 cut(s)	138, 679, 727
BmsI	GCATC	3 cut(s)	454, 484, 700
BpiI	GAAGAC	1 cut(s)	688
BpuEI	CTTGAG	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	180
BsaI	GGTCTC	2 cut(s)	56, 660
BsaJI	CCNNGG	2 cut(s)	261, 739
Bsc4I	CCNNNNNNNGG	2 cut(s)	574, 687
Bse3DI	GCAATG	1 cut(s)	633
BseDI	CCNNGG	2 cut(s)	261, 739
BseGI	GGATG	3 cut(s)	37, 750, 760
BseLI	CCNNNNNNNGG	2 cut(s)	574, 687
BseMI	GCAATG	1 cut(s)	633
BseMII	CTCAG	1 cut(s)	51
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	2 cut(s)	368, 385
BsgI	GTGCAG	2 cut(s)	186, 816
BshFI	GGCC	4 cut(s)	138, 438, 507, 556
BshNI	GGYRCC	2 cut(s)	677, 725
BsiHKCI	CYCGRG	1 cut(s)	738
BslFI	GGGAC	2 cut(s)	44, 644
BslI	CCNNNNNNNGG	2 cut(s)	574, 687
BsmAI	GTCTC	4 cut(s)	56, 82, 86, 660
BsmFI	GGGAC	2 cut(s)	44, 644
BsnI	GGCC	4 cut(s)	138, 438, 507, 556
Bso31I	GGTCTC	2 cut(s)	56, 660
BsoBI	CYCGRG	1 cut(s)	738
Bsp120I	GGGCCC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	5 cut(s)	121, 169, 280, 427, 564
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	3 cut(s)	400, 568, 627
BspANI	GGCC	4 cut(s)	138, 438, 507, 556
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	3 cut(s)	138, 679, 727
BspMAI	CTGCAG	2 cut(s)	386, 622
BspMI	ACCTGC	1 cut(s)	208
BspPI	GGATC	2 cut(s)	116, 559
BspT107I	GGYRCC	2 cut(s)	677, 725
BspTNI	GGTCTC	2 cut(s)	56, 660
BsrDI	GCAATG	1 cut(s)	633
BssECI	CCNNGG	2 cut(s)	261, 739
BssMI	GATC	5 cut(s)	121, 169, 280, 427, 564
BssNI	GRCGYC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	261
Bst4CI	ACNGT	4 cut(s)	97, 221, 251, 598
BstACI	GRCGYC	1 cut(s)	180
BstC8I	GCNNGC	3 cut(s)	436, 499, 799
BstDEI	CTNAG	2 cut(s)	53, 60
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	3 cut(s)	37, 750, 760
BstKTI	GATC	5 cut(s)	124, 172, 283, 430, 567
BstMAI	GTCTC	4 cut(s)	56, 82, 86, 660
BstMBI	GATC	5 cut(s)	121, 169, 280, 427, 564
BstMWI	GCNNNNNNNGC	2 cut(s)	576, 644
BstNSI	RCATGY	1 cut(s)	501
BstSFI	CTRYAG	2 cut(s)	382, 618
BstSLI	GKGCMC	1 cut(s)	140
BstV1I	GCAGC	2 cut(s)	368, 385
BstV2I	GAAGAC	1 cut(s)	688
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuI	GTATCC	1 cut(s)	766
BsuRI	GGCC	4 cut(s)	138, 438, 507, 556
BtgI	CCRYGG	1 cut(s)	261
BtgZI	GCGATG	1 cut(s)	516
BtsCI	GGATG	3 cut(s)	37, 750, 760
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	3 cut(s)	436, 499, 799
Cfr13I	GGNCC	2 cut(s)	136, 137
CviAII	CATG	5 cut(s)	133, 187, 262, 431, 498
CviJI	RGCY	9 cut(s)	138, 277, 376, 438, 507, 543, 556, 579, 691
CviKI_1	RGCY	9 cut(s)	138, 277, 376, 438, 507, 543, 556, 579, 691
DdeI	CTNAG	2 cut(s)	53, 60
DpnI	GATC	5 cut(s)	123, 171, 282, 429, 566
DpnII	GATC	5 cut(s)	121, 169, 280, 427, 564
DrdI	GACNNNNNNGTC	1 cut(s)	100
DseDI	GACNNNNNNGTC	1 cut(s)	100
EaeI	YGGCCR	1 cut(s)	436
Eco130I	CCWWGG	1 cut(s)	261
Eco147I	AGGCCT	1 cut(s)	556
Eco24I	GRGCYC	1 cut(s)	140
Eco31I	GGTCTC	2 cut(s)	56, 660
Eco57I	CTGAAG	1 cut(s)	699
Eco88I	CYCGRG	1 cut(s)	738
EcoT14I	CCWWGG	1 cut(s)	261
EcoT22I	ATGCAT	1 cut(s)	499
EcoT38I	GRGCYC	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	5 cut(s)	136, 190, 265, 434, 501
FaqI	GGGAC	2 cut(s)	44, 644
FatI	CATG	5 cut(s)	132, 186, 261, 430, 497
FauI	CCCGC	1 cut(s)	620
FauNDI	CATATG	2 cut(s)	390, 778
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	2 cut(s)	374, 382
FokI	GGATG	3 cut(s)	24, 757, 767
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	2 cut(s)	374, 382
FspBI	CTAG	1 cut(s)	692
GluI	GCNGC	2 cut(s)	374, 382
HaeIII	GGCC	4 cut(s)	138, 438, 507, 556
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	5 cut(s)	136, 190, 265, 434, 501
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	5 cut(s)	101, 209, 334, 408, 530
HphI	GGTGA	1 cut(s)	727
Hpy166II	GTNNAC	2 cut(s)	184, 735
Hpy188I	TCNGA	2 cut(s)	547, 718
Hpy188III	TCNNGA	2 cut(s)	491, 534
Hpy8I	GTNNAC	2 cut(s)	184, 735
HpyCH4III	ACNGT	4 cut(s)	97, 221, 251, 598
HpyCH4IV	ACGT	1 cut(s)	180
HpyF10VI	GCNNNNNNNGC	2 cut(s)	576, 644
HpyF3I	CTNAG	2 cut(s)	53, 60
HpySE526I	ACGT	1 cut(s)	180
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	5 cut(s)	136, 190, 265, 434, 501
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	5 cut(s)	121, 169, 280, 427, 564
Lsp1109I	GCAGC	2 cut(s)	368, 385
LweI	GCATC	3 cut(s)	454, 484, 700
MaeI	CTAG	1 cut(s)	692
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	238, 364
MalI	GATC	5 cut(s)	123, 171, 282, 429, 566
MboI	GATC	5 cut(s)	121, 169, 280, 427, 564
MboII	GAAGA	3 cut(s)	169, 688, 754
MfeI	CAATTG	1 cut(s)	838
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	5 cut(s)	82, 395, 476, 704, 838
MlyI	GAGTC	3 cut(s)	110, 343, 524
MnlI	CCTC	3 cut(s)	546, 682, 734
Mph1103I	ATGCAT	1 cut(s)	499
MslI	CAYNNNNRTG	1 cut(s)	360
MunI	CAATTG	1 cut(s)	838
MwoI	GCNNNNNNNGC	2 cut(s)	576, 644
NcoI	CCATGG	1 cut(s)	261
NdeI	CATATG	2 cut(s)	390, 778
NdeII	GATC	5 cut(s)	121, 169, 280, 427, 564
NlaIII	CATG	5 cut(s)	136, 190, 265, 434, 501
NlaIV	GGNNCC	3 cut(s)	138, 679, 727
NmuCI	GTSAC	2 cut(s)	238, 364
NsiI	ATGCAT	1 cut(s)	499
NspI	RCATGY	1 cut(s)	501
PaeI	GCATGC	1 cut(s)	501
PaqCI	CACCTGC	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	556
PfeI	GAWTC	2 cut(s)	209, 408
PkrI	GCNGC	2 cut(s)	375, 383
PleI	GAGTC	3 cut(s)	109, 342, 524
PpsI	GAGTC	3 cut(s)	109, 342, 524
PspN4I	GGNNCC	3 cut(s)	138, 679, 727
PspOMI	GGGCCC	1 cut(s)	136
PspPI	GGNCC	2 cut(s)	136, 137
PstI	CTGCAG	2 cut(s)	386, 622
PsuI	RGATCY	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	360
SatI	GCNGC	2 cut(s)	374, 382
Sau3AI	GATC	5 cut(s)	121, 169, 280, 427, 564
Sau96I	GGNCC	2 cut(s)	136, 137
SchI	GAGTC	3 cut(s)	110, 343, 524
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	6 cut(s)	183, 202, 279, 378, 545, 809
SfaNI	GCATC	3 cut(s)	454, 484, 700
SfcI	CTRYAG	2 cut(s)	382, 618
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SphI	GCATGC	1 cut(s)	501
Sse9I	AATT	5 cut(s)	82, 395, 476, 704, 838
SseBI	AGGCCT	1 cut(s)	556
SsiI	CCGC	3 cut(s)	400, 568, 627
SspI	AATATT	2 cut(s)	13, 454
SspMI	CTAG	1 cut(s)	692
StuI	AGGCCT	1 cut(s)	556
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	4 cut(s)	97, 221, 251, 598
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	3 cut(s)	99, 115, 279
TasI	AATT	5 cut(s)	82, 395, 476, 704, 838
TfiI	GAWTC	2 cut(s)	209, 408
TseFI	GTSAC	2 cut(s)	238, 364
TseI	GCWGC	2 cut(s)	373, 381
Tsp45I	GTSAC	2 cut(s)	238, 364
TspDTI	ATGAA	5 cut(s)	17, 165, 280, 407, 821
XapI	RAATTY	1 cut(s)	704
XceI	RCATGY	1 cut(s)	501
XspI	CTAG	1 cut(s)	692
ZraI	GACGTC	1 cut(s)	181
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.