Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004362

Physical Location & Seq

Genomic Coordinates Forward (+)

15969803 .. 15970695

Gene Structure 893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G197700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTACTCACAGGAATCAAGCCTCCCGGAAATGTTGACAGAGAATGATCCCATAACATCTCTTAGTACTCAAAACGCAGGACTACATCCCTTGCACATGGGCCCACTCAGCAATGAAATGCAGGAAGAGTTGAATCAGCCGGACGCCGCTGTGGGATTTTTAGAGCCTGATGAAGTTTCTATTCCTTCTATCTATGCTTCCCTTGTTCCGTGGTATCGTGGAAGTCAAAGGATTAAGTTACTACACGATCTGCAGCTTTGCTGTAGGCGTATGAAAATACGGTTTGGAATCAATATCAATTCAGAGTATTTTGATAATGCTGGACGGCTAAAGTTGAATATTATGGCAGACGCTTCACCAAATTTATGTAAAGTTCTTGATGCATGTGATGACATTGCAAGTAAGTTGTCTGAGGATTCTGGAAGCAATTCCGAATGGAGGCCTGTTGTGATCCGGCAATACGACTACCCTGCAGTGAGATTGCATATACCGGCATCAGGGGATATTAGGATCTACGCCACAGAGATCTATAAAAAAGAGCCTTGTGGCACTGAGCAGAGGCTAGTCTTCACTAAGTTTGATCCTTCAGAACTTAGTACCTTGTTCAAACAGGGGAGTTTTATGGATGCATTCTTTTCCTTGGATCCATATGACTATCAGCAGAAAGCAGGCATTAGGTTGGTGGCAAAGAAATTGGTTATTCATTCGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008408 GO:0009380 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0030312 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:1901360 GO:1902494 GO:1905347 GO:1905348 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

238

Amino Acids

26.81

Weight (kDa)

5.28

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74390 AT1G74390 AT1G74390 AT1G74390 AT5G07710 AT5G61390
fragaria_vesca	FvH4_5g14590 FvH4_5g14590 FvH4_5g14590
malus_domestica	MD06G1197200.v1.1 MD14G1204200.v1.1 MD14G1204300.v1.1 MD14G1204400.v1.1
prunus_persica	Prupe.5G197500_v2.0.a1 Prupe.5G197500_v2.0.a1 Prupe.5G197700_v2.0.a1
pyrus_communis	pycom06g17400 pycom14g16890
rosa_chinensis	RchiOBHm_Chr7g0181951 RchiOBHm_Chr7g0181981
rosa_laevigata	RLG00000005164
rosa_roxburghii	Rroxscaffold_3G00271650
rosa_rugosa	Rorug06G0444900
rosa_samantha	Rh7AG047200 Rh7BG046800 Rh7BG047100 Rh7CG047300 Rh7CG047400 Rh7DG046300 Rh7DG046400
rosa_wichuraiana	Rw0G019670 Rw7G003910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	6 cut(s)	41, 445, 518, 575, 638, 651
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	570
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	3 cut(s)	5, 67, 598
AfiI	CCNNNNNNNGG	2 cut(s)	438, 497
AgsI	TTSAA	3 cut(s)	133, 337, 607
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
AlwI	GGATC	6 cut(s)	41, 445, 518, 575, 638, 651
AoxI	GGCC	2 cut(s)	100, 440
ApaI	GGGCCC	1 cut(s)	104
ApeKI	GCWGC	1 cut(s)	253
ApoI	RAATTY	1 cut(s)	361
Asp700I	GAANNNNTTC	1 cut(s)	427
AspS9I	GGNCC	2 cut(s)	100, 101
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	348
AsuII	TTCGAA	1 cut(s)	707
BaeGI	GKGCMC	1 cut(s)	104
BamHI	GGATCC	1 cut(s)	643
BanII	GRGCYC	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	559
BbvI	GCAGC	1 cut(s)	265
BceAI	ACGGC	1 cut(s)	341
BcgI	CGANNNNNNTGC	2 cut(s)	452, 486
BcnI	CCSGG	1 cut(s)	26
BfaI	CTAG	1 cut(s)	563
BfmI	CTRYAG	3 cut(s)	251, 262, 471
BglII	AGATCT	1 cut(s)	525
BisI	GCNGC	2 cut(s)	147, 254
BlsI	GCNGC	2 cut(s)	148, 255
BmcAI	AGTACT	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	26
BmgT120I	GGNCC	2 cut(s)	100, 101
BmiI	GGNNCC	2 cut(s)	102, 645
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	3 cut(s)	370, 503, 616
BpiI	GAAGAC	1 cut(s)	559
Bpu14I	TTCGAA	1 cut(s)	707
BpuMI	CCSGG	1 cut(s)	26
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	209, 639
Bsc4I	CCNNNNNNNGG	2 cut(s)	438, 497
Bse118I	RCCGGY	1 cut(s)	490
Bse3DI	GCAATG	2 cut(s)	118, 393
BseDI	CCNNGG	2 cut(s)	209, 639
BseGI	GGATG	2 cut(s)	85, 631
BseLI	CCNNNNNNNGG	2 cut(s)	438, 497
BseMI	GCAATG	2 cut(s)	118, 393
BseMII	CTCAG	3 cut(s)	121, 402, 543
BseSI	GKGCMC	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	265
BshFI	GGCC	2 cut(s)	102, 442
BsiSI	CCGG	4 cut(s)	26, 140, 454, 491
BslI	CCNNNNNNNGG	2 cut(s)	438, 497
BsmI	GAATGC	1 cut(s)	629
BsnI	GGCC	2 cut(s)	102, 442
Bsp119I	TTCGAA	1 cut(s)	707
Bsp120I	GGGCCC	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	7 cut(s)	46, 247, 450, 510, 525, 580, 643
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	2 cut(s)	102, 442
BspCNI	CTCAG	3 cut(s)	120, 403, 544
BspLI	GGNNCC	2 cut(s)	102, 645
BspMAI	CTGCAG	2 cut(s)	255, 475
BspPI	GGATC	6 cut(s)	41, 445, 518, 575, 638, 651
BspT104I	TTCGAA	1 cut(s)	707
BsrDI	GCAATG	2 cut(s)	118, 393
BsrFI	RCCGGY	1 cut(s)	490
BssAI	RCCGGY	1 cut(s)	490
BssECI	CCNNGG	2 cut(s)	209, 639
BssMI	GATC	7 cut(s)	46, 247, 450, 510, 525, 580, 643
BssNI	GRCGYC	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	639
Bst4CI	ACNGT	1 cut(s)	282
Bst6I	CTCTTC	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	144
BstBI	TTCGAA	1 cut(s)	707
BstC8I	GCNNGC	1 cut(s)	670
BstDEI	CTNAG	6 cut(s)	62, 107, 411, 552, 573, 593
BstDSI	CCRYGG	1 cut(s)	209
BstF5I	GGATG	2 cut(s)	85, 631
BstKTI	GATC	7 cut(s)	49, 250, 453, 513, 528, 583, 646
BstMBI	GATC	7 cut(s)	46, 247, 450, 510, 525, 580, 643
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNSI	RCATGY	1 cut(s)	387
BstSCI	CCNGG	1 cut(s)	24
BstSFI	CTRYAG	3 cut(s)	251, 262, 471
BstSLI	GKGCMC	1 cut(s)	104
BstV1I	GCAGC	1 cut(s)	265
BstV2I	GAAGAC	1 cut(s)	559
BstX2I	RGATCY	3 cut(s)	510, 525, 643
BstYI	RGATCY	3 cut(s)	510, 525, 643
BsuRI	GGCC	2 cut(s)	102, 442
BtgI	CCRYGG	1 cut(s)	209
BtsCI	GGATG	2 cut(s)	85, 631
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	2 cut(s)	480, 549
Cac8I	GCNNGC	1 cut(s)	670
Cfr10I	RCCGGY	1 cut(s)	490
Cfr13I	GGNCC	2 cut(s)	100, 101
CseI	GACGC	2 cut(s)	152, 359
Csp6I	GTAC	3 cut(s)	4, 66, 597
CviAII	CATG	2 cut(s)	97, 384
CviJI	RGCY	9 cut(s)	21, 102, 139, 166, 256, 328, 442, 541, 562
CviKI_1	RGCY	9 cut(s)	21, 102, 139, 166, 256, 328, 442, 541, 562
CviQI	GTAC	3 cut(s)	4, 66, 597
DdeI	CTNAG	6 cut(s)	62, 107, 411, 552, 573, 593
DpnI	GATC	7 cut(s)	48, 249, 452, 512, 527, 582, 645
DpnII	GATC	7 cut(s)	46, 247, 450, 510, 525, 580, 643
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	639
Eco147I	AGGCCT	1 cut(s)	442
Eco24I	GRGCYC	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	570
EcoT14I	CCWWGG	1 cut(s)	639
EcoT22I	ATGCAT	2 cut(s)	385, 631
EcoT38I	GRGCYC	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	639
FaeI	CATG	2 cut(s)	100, 387
FatI	CATG	2 cut(s)	96, 383
FauNDI	CATATG	1 cut(s)	649
Fnu4HI	GCNGC	2 cut(s)	147, 254
FokI	GGATG	2 cut(s)	72, 638
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	2 cut(s)	147, 254
FspBI	CTAG	1 cut(s)	563
GluI	GCNGC	2 cut(s)	147, 254
HaeIII	GGCC	2 cut(s)	102, 442
HapII	CCGG	4 cut(s)	26, 140, 454, 491
HgaI	GACGC	2 cut(s)	152, 359
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	2 cut(s)	100, 387
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HinfI	GANTC	4 cut(s)	14, 133, 288, 416
HpaII	CCGG	4 cut(s)	26, 140, 454, 491
HphI	GGTGA	1 cut(s)	348
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	4 cut(s)	304, 412, 433, 589
Hpy188III	TCNNGA	2 cut(s)	377, 420
Hpy8I	GTNNAC	1 cut(s)	36
HpyAV	CCTTC	2 cut(s)	195, 594
HpyCH4III	ACNGT	1 cut(s)	282
HpyCH4V	TGCA	8 cut(s)	94, 121, 253, 383, 398, 473, 484, 629
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HpyF3I	CTNAG	6 cut(s)	62, 107, 411, 552, 573, 593
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	2 cut(s)	100, 387
Kzo9I	GATC	7 cut(s)	46, 247, 450, 510, 525, 580, 643
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	3 cut(s)	370, 503, 616
MaeI	CTAG	1 cut(s)	563
MaeIII	GTNAC	1 cut(s)	237
MalI	GATC	7 cut(s)	48, 249, 452, 512, 527, 582, 645
MboI	GATC	7 cut(s)	46, 247, 450, 510, 525, 580, 643
MboII	GAAGA	2 cut(s)	137, 559
MflI	RGATCY	3 cut(s)	510, 525, 643
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	5 cut(s)	298, 361, 427, 692, 709
MnlI	CCTC	4 cut(s)	32, 406, 432, 552
Mph1103I	ATGCAT	2 cut(s)	385, 631
MroXI	GAANNNNTTC	1 cut(s)	427
MseI	TTAA	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	4 cut(s)	26, 140, 454, 491
MspR9I	CCNGG	1 cut(s)	26
Mva1269I	GAATGC	1 cut(s)	629
MwoI	GCNNNNNNNGC	1 cut(s)	108
NciI	CCSGG	1 cut(s)	26
NdeI	CATATG	1 cut(s)	649
NdeII	GATC	7 cut(s)	46, 247, 450, 510, 525, 580, 643
NlaIII	CATG	2 cut(s)	100, 387
NlaIV	GGNNCC	2 cut(s)	102, 645
NsiI	ATGCAT	2 cut(s)	385, 631
NspI	RCATGY	1 cut(s)	387
NspV	TTCGAA	1 cut(s)	707
PceI	AGGCCT	1 cut(s)	442
PctI	GAATGC	1 cut(s)	629
PdmI	GAANNNNTTC	1 cut(s)	427
PfeI	GAWTC	4 cut(s)	14, 133, 288, 416
PfoI	TCCNGGA	1 cut(s)	24
PkrI	GCNGC	2 cut(s)	148, 255
PspN4I	GGNNCC	2 cut(s)	102, 645
PspOMI	GGGCCC	1 cut(s)	100
PspPI	GGNCC	2 cut(s)	100, 101
PstI	CTGCAG	2 cut(s)	255, 475
PsuI	RGATCY	3 cut(s)	510, 525, 643
RsaI	GTAC	3 cut(s)	5, 67, 598
RsaNI	GTAC	3 cut(s)	4, 66, 597
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	2 cut(s)	147, 254
Sau3AI	GATC	7 cut(s)	46, 247, 450, 510, 525, 580, 643
Sau96I	GGNCC	2 cut(s)	100, 101
ScaI	AGTACT	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	3 cut(s)	258, 602, 680
SfaNI	GCATC	3 cut(s)	370, 503, 616
SfcI	CTRYAG	3 cut(s)	251, 262, 471
SfuI	TTCGAA	1 cut(s)	707
Sse9I	AATT	5 cut(s)	298, 361, 427, 692, 709
SseBI	AGGCCT	1 cut(s)	442
SsiI	CCGC	1 cut(s)	147
SspI	AATATT	1 cut(s)	340
SspMI	CTAG	1 cut(s)	563
StuI	AGGCCT	1 cut(s)	442
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	639
TaaI	ACNGT	1 cut(s)	282
TaqI	TCGA	1 cut(s)	707
TasI	AATT	5 cut(s)	298, 361, 427, 692, 709
TatI	WGTACW	2 cut(s)	3, 65
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	4 cut(s)	14, 133, 288, 416
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	2 cut(s)	480, 556
TseI	GCWGC	1 cut(s)	253
TspDTI	ATGAA	4 cut(s)	129, 186, 287, 692
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	2 cut(s)	480, 556
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	1 cut(s)	387
XmnI	GAANNNNTTC	1 cut(s)	427
XspI	CTAG	1 cut(s)	563
ZrmI	AGTACT	1 cut(s)	67
Zsp2I	ATGCAT	2 cut(s)	385, 631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.