Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00887

Orthogroup ID

OG0004362

Physical Location & Seq

Genomic Coordinates Forward (+)

147 .. 1555

Gene Structure 1409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G019670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAATCTTGAAGTACTCAAATATTGTGCTACAGTTTTATTCTTGGAGTCCAGCCTCCCGGACATATTAACAGAAAACAGCTGGGTTTCTCCAAATGCTACAACAAGAAGTCGAAGTGTTGGAAAGTCATCTCCTGAGGGGTCAAGCATGAACATAAATATTTCAAATCAAACAGGGGACAATCATCCAATAACATCTCTTAGGACTGAGACCACACAAGAAGTCTCTAATTTGCTTGAGACTGTCGAGTCCAGCACAAATAGACCCGATCCTTTTGACATGGGCCCACTTATCAATGAAGTGAAGAATGAGTTATTAGATCAGCAAGACATCAACATGGTGGAAATACCTGCACAAGAGTCTCCCAACAGTTCTCTCAATGCTTCTGTGACCAACAACTGTAATGCCACCATGGATTTTTTACAGCTCGATCAAGTTTTCATTCCTTATATCAGTGCTTCGCTTGTTCCATTGTATCGTGGGAGTCAAAGGATAAAGTTATTACACAAAGATGTCACTTTGCAGCTTTGCTGCAGTCATATGAAATTGCGGTTTGGAATCAATACGAAGTTTTTTGATCATGCTGGCCGACCACGACTGAATATTGTCTTTGATGCACCACCAAAATTATGTGAAGTTCTTGATGCATGCGATGGCCTTGCAAAGAAGTTGTCTTTGGACTCTGGAAGTAGCTCTGAATGGAGGCCTGTTGTGATCCGCAAACAGGGCTTCTACAACTACCCTACTGTGAGATTGCACATACAAACTGCAGTATGCGGGGACATTGCAATCTATGCCACAGAGATATATCAAAGAGACCCCTCTGGCACTGAGCAAAGGCTAGTCTTCTCTAAATTTGATGCTTCAGAACTTGGTGCCTTGTTCACCCGAGGGATGTTTATGGATGTGTTCTTCTCTTTGGATCCATATGACTATCAGCAGAGTGCAGGCATTAGGTTGGTGGCAAAGAAACTGATTATTCATTCCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008408 GO:0009380 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0030312 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:1901360 GO:1902494 GO:1905347 GO:1905348 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

330

Amino Acids

36.87

Weight (kDa)

5.44

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74390 AT1G74390 AT1G74390 AT1G74390 AT5G07710 AT5G61390
fragaria_vesca	FvH4_5g14590 FvH4_5g14590 FvH4_5g14590
malus_domestica	MD06G1197200.v1.1 MD14G1204200.v1.1 MD14G1204300.v1.1 MD14G1204400.v1.1
prunus_persica	Prupe.5G197500_v2.0.a1 Prupe.5G197500_v2.0.a1 Prupe.5G197700_v2.0.a1
pyrus_communis	pycom06g17400 pycom14g16890
rosa_chinensis	RchiOBHm_Chr7g0181951 RchiOBHm_Chr7g0181981
rosa_laevigata	RLG00000005164
rosa_roxburghii	Rroxscaffold_3G00271650
rosa_rugosa	Rorug06G0444900
rosa_samantha	Rh7AG047200 Rh7BG046800 Rh7BG047100 Rh7CG047300 Rh7CG047400 Rh7DG046300 Rh7DG046400
rosa_wichuraiana	Rw0G019670 Rw7G003910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	247
Acc36I	ACCTGC	1 cut(s)	358
AccB1I	GGYRCC	1 cut(s)	875
AciI	CCGC	3 cut(s)	550, 718, 777
AclWI	GGATC	4 cut(s)	263, 709, 917, 930
AcoI	YGGCCR	1 cut(s)	586
AcsI	RAATTY	1 cut(s)	854
AcuI	CTGAAG	1 cut(s)	849
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	1 cut(s)	724
AgsI	TTSAA	2 cut(s)	11, 165
AjuI	GAANNNNNNNTTGG	2 cut(s)	659, 691
AluBI	AGCT	4 cut(s)	81, 427, 526, 693
AluI	AGCT	4 cut(s)	81, 427, 526, 693
Alw26I	GTCTC	5 cut(s)	203, 229, 233, 366, 810
AlwI	GGATC	4 cut(s)	263, 709, 917, 930
Ama87I	CYCGRG	1 cut(s)	888
AoxI	GGCC	4 cut(s)	283, 586, 655, 704
ApaI	GGGCCC	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	523, 531
ApoI	RAATTY	1 cut(s)	854
ArsI	GACNNNNNNTTYG	2 cut(s)	656, 688
AspS9I	GGNCC	2 cut(s)	283, 284
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	877
AvaI	CYCGRG	1 cut(s)	888
AxyI	CCTNAGG	1 cut(s)	135
BaeGI	GKGCMC	1 cut(s)	287
BamHI	GGATCC	1 cut(s)	922
BanI	GGYRCC	1 cut(s)	875
BanII	GRGCYC	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	838
BbvI	GCAGC	2 cut(s)	518, 535
BccI	CCATC	1 cut(s)	647
BcgI	CGANNNNNNTGC	2 cut(s)	641, 675
BclI	TGATCA	1 cut(s)	577
BcnI	CCSGG	1 cut(s)	59
BcoDI	GTCTC	5 cut(s)	203, 229, 233, 366, 810
BfaI	CTAG	1 cut(s)	842
BfmI	CTRYAG	3 cut(s)	30, 532, 768
BfuAI	ACCTGC	1 cut(s)	358
BisI	GCNGC	2 cut(s)	524, 532
BlsI	GCNGC	2 cut(s)	525, 533
BmcAI	AGTACT	1 cut(s)	15
Bme1390I	CCNGG	1 cut(s)	59
BmeT110I	CYCGRG	1 cut(s)	888
BmgT120I	GGNCC	2 cut(s)	283, 284
BmiI	GGNNCC	3 cut(s)	285, 877, 924
BmrFI	CCNGG	1 cut(s)	59
BmsI	GCATC	3 cut(s)	604, 634, 850
BpiI	GAAGAC	1 cut(s)	838
BpuEI	CTTGAG	1 cut(s)	257
BpuMI	CCSGG	1 cut(s)	59
BsaI	GGTCTC	2 cut(s)	203, 810
BsaJI	CCNNGG	2 cut(s)	411, 889
Bsc4I	CCNNNNNNNGG	1 cut(s)	724
Bse21I	CCTNAGG	1 cut(s)	135
Bse3DI	GCAATG	1 cut(s)	783
BseDI	CCNNGG	2 cut(s)	411, 889
BseGI	GGATG	3 cut(s)	184, 900, 910
BseLI	CCNNNNNNNGG	1 cut(s)	724
BseMI	GCAATG	1 cut(s)	783
BseMII	CTCAG	3 cut(s)	126, 198, 822
BseSI	GKGCMC	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	518, 535
BseYI	CCCAGC	1 cut(s)	81
BsgI	GTGCAG	2 cut(s)	336, 966
BshFI	GGCC	4 cut(s)	285, 588, 657, 706
BshNI	GGYRCC	1 cut(s)	875
BsiHKCI	CYCGRG	1 cut(s)	888
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	2 cut(s)	191, 794
BslI	CCNNNNNNNGG	1 cut(s)	724
BsmAI	GTCTC	5 cut(s)	203, 229, 233, 366, 810
BsmFI	GGGAC	2 cut(s)	191, 794
BsnI	GGCC	4 cut(s)	285, 588, 657, 706
Bso31I	GGTCTC	2 cut(s)	203, 810
BsoBI	CYCGRG	1 cut(s)	888
Bsp120I	GGGCCC	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	6 cut(s)	268, 319, 430, 577, 714, 922
Bsp19I	CCATGG	1 cut(s)	411
BspACI	CCGC	3 cut(s)	550, 718, 777
BspANI	GGCC	4 cut(s)	285, 588, 657, 706
BspCNI	CTCAG	3 cut(s)	127, 199, 823
BspLI	GGNNCC	3 cut(s)	285, 877, 924
BspMAI	CTGCAG	2 cut(s)	536, 772
BspMI	ACCTGC	1 cut(s)	358
BspPI	GGATC	4 cut(s)	263, 709, 917, 930
BspT107I	GGYRCC	1 cut(s)	875
BspTNI	GGTCTC	2 cut(s)	203, 810
BsrDI	GCAATG	1 cut(s)	783
BssECI	CCNNGG	2 cut(s)	411, 889
BssMI	GATC	6 cut(s)	268, 319, 430, 577, 714, 922
BssT1I	CCWWGG	1 cut(s)	411
Bst4CI	ACNGT	5 cut(s)	34, 244, 371, 401, 748
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstC8I	GCNNGC	3 cut(s)	586, 649, 949
BstDEI	CTNAG	4 cut(s)	135, 200, 207, 831
BstDSI	CCRYGG	1 cut(s)	411
BstF5I	GGATG	3 cut(s)	184, 900, 910
BstKTI	GATC	6 cut(s)	271, 322, 433, 580, 717, 925
BstMAI	GTCTC	5 cut(s)	203, 229, 233, 366, 810
BstMBI	GATC	6 cut(s)	268, 319, 430, 577, 714, 922
BstMWI	GCNNNNNNNGC	2 cut(s)	726, 794
BstNSI	RCATGY	1 cut(s)	651
BstSCI	CCNGG	1 cut(s)	57
BstSFI	CTRYAG	3 cut(s)	30, 532, 768
BstSLI	GKGCMC	1 cut(s)	287
BstV1I	GCAGC	2 cut(s)	518, 535
BstV2I	GAAGAC	1 cut(s)	838
BstX2I	RGATCY	1 cut(s)	922
BstYI	RGATCY	1 cut(s)	922
Bsu36I	CCTNAGG	1 cut(s)	135
BsuRI	GGCC	4 cut(s)	285, 588, 657, 706
BtgI	CCRYGG	1 cut(s)	411
BtgZI	GCGATG	1 cut(s)	666
BtsCI	GGATG	3 cut(s)	184, 900, 910
BtsIMutI	CAGTG	2 cut(s)	460, 828
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	3 cut(s)	586, 649, 949
Cfr13I	GGNCC	2 cut(s)	283, 284
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	6 cut(s)	148, 280, 337, 412, 581, 648
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	4 cut(s)	135, 200, 207, 831
DpnI	GATC	6 cut(s)	270, 321, 432, 579, 716, 924
DpnII	GATC	6 cut(s)	268, 319, 430, 577, 714, 922
DrdI	GACNNNNNNGTC	1 cut(s)	247
DseDI	GACNNNNNNGTC	1 cut(s)	247
EaeI	YGGCCR	1 cut(s)	586
Eco130I	CCWWGG	1 cut(s)	411
Eco147I	AGGCCT	1 cut(s)	706
Eco24I	GRGCYC	1 cut(s)	287
Eco31I	GGTCTC	2 cut(s)	203, 810
Eco57I	CTGAAG	1 cut(s)	849
Eco81I	CCTNAGG	1 cut(s)	135
Eco88I	CYCGRG	1 cut(s)	888
EcoT14I	CCWWGG	1 cut(s)	411
EcoT22I	ATGCAT	1 cut(s)	649
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	6 cut(s)	151, 283, 340, 415, 584, 651
FaqI	GGGAC	2 cut(s)	191, 794
FatI	CATG	6 cut(s)	147, 279, 336, 411, 580, 647
FauI	CCCGC	1 cut(s)	770
FauNDI	CATATG	2 cut(s)	540, 928
FbaI	TGATCA	1 cut(s)	577
Fnu4HI	GCNGC	2 cut(s)	524, 532
FokI	GGATG	3 cut(s)	171, 907, 917
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	2 cut(s)	524, 532
FspBI	CTAG	1 cut(s)	842
GluI	GCNGC	2 cut(s)	524, 532
GsaI	CCCAGC	1 cut(s)	85
HaeIII	GGCC	4 cut(s)	285, 588, 657, 706
HapII	CCGG	1 cut(s)	59
Hin1II	CATG	6 cut(s)	151, 283, 340, 415, 584, 651
HinfI	GANTC	7 cut(s)	4, 47, 248, 359, 484, 558, 680
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	1 cut(s)	877
Hpy166II	GTNNAC	1 cut(s)	885
Hpy188I	TCNGA	2 cut(s)	697, 868
Hpy188III	TCNNGA	4 cut(s)	8, 134, 641, 684
Hpy8I	GTNNAC	1 cut(s)	885
HpyCH4III	ACNGT	5 cut(s)	34, 244, 371, 401, 748
HpyF10VI	GCNNNNNNNGC	2 cut(s)	726, 794
HpyF3I	CTNAG	4 cut(s)	135, 200, 207, 831
Hsp92II	CATG	6 cut(s)	151, 283, 340, 415, 584, 651
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	6 cut(s)	268, 319, 430, 577, 714, 922
Lsp1109I	GCAGC	2 cut(s)	518, 535
LweI	GCATC	3 cut(s)	604, 634, 850
MaeI	CTAG	1 cut(s)	842
MaeIII	GTNAC	2 cut(s)	388, 514
MalI	GATC	6 cut(s)	270, 321, 432, 579, 716, 924
MboI	GATC	6 cut(s)	268, 319, 430, 577, 714, 922
MboII	GAAGA	3 cut(s)	316, 838, 904
MfeI	CAATTG	1 cut(s)	988
MflI	RGATCY	1 cut(s)	922
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	5 cut(s)	229, 545, 626, 854, 988
MlyI	GAGTC	5 cut(s)	56, 257, 368, 493, 674
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	5 cut(s)	65, 130, 696, 832, 884
Mph1103I	ATGCAT	1 cut(s)	649
MseI	TTAA	1 cut(s)	68
MslI	CAYNNNNRTG	2 cut(s)	335, 510
MspA1I	CMGCKG	1 cut(s)	81
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	59
MunI	CAATTG	1 cut(s)	988
MwoI	GCNNNNNNNGC	2 cut(s)	726, 794
NciI	CCSGG	1 cut(s)	59
NcoI	CCATGG	1 cut(s)	411
NdeI	CATATG	2 cut(s)	540, 928
NdeII	GATC	6 cut(s)	268, 319, 430, 577, 714, 922
NlaIII	CATG	6 cut(s)	151, 283, 340, 415, 584, 651
NlaIV	GGNNCC	3 cut(s)	285, 877, 924
NmuCI	GTSAC	2 cut(s)	388, 514
NsiI	ATGCAT	1 cut(s)	649
NspI	RCATGY	1 cut(s)	651
PaeI	GCATGC	1 cut(s)	651
PceI	AGGCCT	1 cut(s)	706
PfeI	GAWTC	2 cut(s)	4, 558
PfoI	TCCNGGA	1 cut(s)	57
PkrI	GCNGC	2 cut(s)	525, 533
PleI	GAGTC	5 cut(s)	55, 256, 367, 492, 674
PpsI	GAGTC	5 cut(s)	55, 256, 367, 492, 674
PspFI	CCCAGC	1 cut(s)	81
PspN4I	GGNNCC	3 cut(s)	285, 877, 924
PspOMI	GGGCCC	1 cut(s)	283
PspPI	GGNCC	2 cut(s)	283, 284
PstI	CTGCAG	2 cut(s)	536, 772
PsuI	RGATCY	1 cut(s)	922
PvuII	CAGCTG	1 cut(s)	81
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
RseI	CAYNNNNRTG	2 cut(s)	335, 510
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	2 cut(s)	524, 532
Sau3AI	GATC	6 cut(s)	268, 319, 430, 577, 714, 922
Sau96I	GGNCC	2 cut(s)	283, 284
ScaI	AGTACT	1 cut(s)	15
SchI	GAGTC	5 cut(s)	56, 257, 368, 493, 674
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	6 cut(s)	83, 352, 429, 528, 695, 959
SfaNI	GCATC	3 cut(s)	604, 634, 850
SfcI	CTRYAG	3 cut(s)	30, 532, 768
SmiMI	CAYNNNNRTG	2 cut(s)	335, 510
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
SphI	GCATGC	1 cut(s)	651
Sse9I	AATT	5 cut(s)	229, 545, 626, 854, 988
SseBI	AGGCCT	1 cut(s)	706
SsiI	CCGC	3 cut(s)	550, 718, 777
SspI	AATATT	3 cut(s)	23, 160, 604
SspMI	CTAG	1 cut(s)	842
StuI	AGGCCT	1 cut(s)	706
StyD4I	CCNGG	1 cut(s)	57
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	5 cut(s)	34, 244, 371, 401, 748
TaqI	TCGA	3 cut(s)	112, 246, 429
TasI	AATT	5 cut(s)	229, 545, 626, 854, 988
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	2 cut(s)	4, 558
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	2 cut(s)	460, 835
TseFI	GTSAC	2 cut(s)	388, 514
TseI	GCWGC	2 cut(s)	523, 531
Tsp45I	GTSAC	2 cut(s)	388, 514
TspDTI	ATGAA	6 cut(s)	17, 164, 312, 430, 557, 971
TspRI	CASTG	2 cut(s)	460, 835
XapI	RAATTY	1 cut(s)	854
XceI	RCATGY	1 cut(s)	651
XspI	CTAG	1 cut(s)	842
ZrmI	AGTACT	1 cut(s)	15
Zsp2I	ATGCAT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.