EXOIII
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G74390 AT1G74390 AT1G74390 AT1G74390 AT5G07710 AT5G61390 |
| fragaria_vesca | FvH4_5g14590 FvH4_5g14590 FvH4_5g14590 |
| malus_domestica | MD06G1197200.v1.1 MD14G1204200.v1.1 MD14G1204300.v1.1 MD14G1204400.v1.1 |
| prunus_persica | Prupe.5G197500_v2.0.a1 Prupe.5G197500_v2.0.a1 Prupe.5G197700_v2.0.a1 |
| pyrus_communis | pycom06g17400 pycom14g16890 |
| rosa_chinensis | RchiOBHm_Chr7g0181951 RchiOBHm_Chr7g0181981 |
| rosa_laevigata | RLG00000005164 |
| rosa_roxburghii | Rroxscaffold_3G00271650 |
| rosa_rugosa | Rorug06G0444900 |
| rosa_samantha | Rh7AG047200 Rh7BG046800 Rh7BG047100 Rh7CG047300 Rh7CG047400 Rh7DG046300 Rh7DG046400 |
| rosa_wichuraiana | Rw0G019670 Rw7G003910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 172, 287 |
| AccB1I | GGYRCC | 1 cut(s) | 58 |
| AccI | GTMKAC | 1 cut(s) | 267 |
| AccIII | TCCGGA | 1 cut(s) | 1263 |
| AclWI | GGATC | 6 cut(s) | 325, 338, 812, 1255, 1463, 1476 |
| AcoI | YGGCCR | 2 cut(s) | 73, 444 |
| AcsI | RAATTY | 1 cut(s) | 1171 |
| AcuI | CTGAAG | 1 cut(s) | 1395 |
| AcyI | GRCGYC | 1 cut(s) | 222 |
| AfaI | GTAC | 4 cut(s) | 382, 894, 900, 1423 |
| AfeI | AGCGCT | 1 cut(s) | 413 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 78, 465, 1270 |
| AgeI | ACCGGT | 1 cut(s) | 21 |
| AgsI | TTSAA | 9 cut(s) | 29, 248, 518, 526, 797, 848, 865, 1147, 1432 |
| AjiI | CACGTC | 1 cut(s) | 46 |
| AjnI | CCWGG | 2 cut(s) | 75, 153 |
| AleI | CACNNNNGTG | 1 cut(s) | 155 |
| AluBI | AGCT | 7 cut(s) | 127, 136, 144, 428, 809, 929, 1072 |
| AluI | AGCT | 7 cut(s) | 127, 136, 144, 428, 809, 929, 1072 |
| Alw21I | GWGCWC | 2 cut(s) | 138, 328 |
| Alw26I | GTCTC | 5 cut(s) | 44, 213, 787, 899, 1243 |
| AlwI | GGATC | 6 cut(s) | 325, 338, 812, 1255, 1463, 1476 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 932 |
| Ama87I | CYCGRG | 1 cut(s) | 137 |
| Aor13HI | TCCGGA | 1 cut(s) | 1263 |
| Aor51HI | AGCGCT | 1 cut(s) | 413 |
| AoxI | GGCC | 4 cut(s) | 73, 359, 444, 831 |
| ApeKI | GCWGC | 4 cut(s) | 201, 929, 932, 1069 |
| ApoI | RAATTY | 1 cut(s) | 1171 |
| AsiGI | ACCGGT | 1 cut(s) | 21 |
| AspA2I | CCTAGG | 1 cut(s) | 119 |
| AspLEI | GCGC | 2 cut(s) | 201, 414 |
| AspS9I | GGNCC | 1 cut(s) | 832 |
| AsuC2I | CCSGG | 1 cut(s) | 335 |
| AsuHPI | GGTGA | 3 cut(s) | 16, 76, 1158 |
| AsuII | TTCGAA | 1 cut(s) | 1532 |
| AvaI | CYCGRG | 1 cut(s) | 137 |
| AvrII | CCTAGG | 1 cut(s) | 119 |
| BalI | TGGCCA | 1 cut(s) | 446 |
| BamHI | GGATCC | 2 cut(s) | 330, 1468 |
| BanI | GGYRCC | 1 cut(s) | 58 |
| BanII | GRGCYC | 1 cut(s) | 138 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 882, 914 |
| BauI | CACGAG | 1 cut(s) | 128 |
| BbsI | GAAGAC | 2 cut(s) | 24, 1384 |
| Bbv12I | GWGCWC | 2 cut(s) | 138, 328 |
| BbvI | GCAGC | 4 cut(s) | 188, 916, 919, 1081 |
| BccI | CCATC | 3 cut(s) | 436, 620, 1193 |
| BceAI | ACGGC | 2 cut(s) | 209, 223 |
| BciT130I | CCWGG | 2 cut(s) | 77, 155 |
| BclI | TGATCA | 1 cut(s) | 1123 |
| BcnI | CCSGG | 1 cut(s) | 335 |
| BcoDI | GTCTC | 5 cut(s) | 44, 213, 787, 899, 1243 |
| BfaI | CTAG | 3 cut(s) | 120, 887, 1388 |
| BfmI | CTRYAG | 2 cut(s) | 1078, 1290 |
| BfoI | RGCGCY | 1 cut(s) | 415 |
| BfuAI | ACCTGC | 2 cut(s) | 172, 287 |
| BisI | GCNGC | 4 cut(s) | 202, 930, 933, 1070 |
| BlnI | CCTAGG | 1 cut(s) | 119 |
| BlsI | GCNGC | 4 cut(s) | 203, 931, 934, 1071 |
| Bme1390I | CCNGG | 3 cut(s) | 77, 155, 335 |
| BmeT110I | CYCGRG | 1 cut(s) | 137 |
| BmgBI | CACGTC | 1 cut(s) | 46 |
| BmgT120I | GGNCC | 1 cut(s) | 832 |
| BmiI | GGNNCC | 4 cut(s) | 60, 332, 834, 1470 |
| BmrFI | CCNGG | 3 cut(s) | 77, 155, 335 |
| BmsI | GCATC | 8 cut(s) | 685, 764, 944, 1150, 1172, 1180, 1396, 1441 |
| BpiI | GAAGAC | 2 cut(s) | 24, 1384 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 131, 163 |
| Bpu10I | CCTNAGC | 1 cut(s) | 699 |
| Bpu14I | TTCGAA | 1 cut(s) | 1532 |
| BpuMI | CCSGG | 1 cut(s) | 335 |
| BsaHI | GRCGYC | 1 cut(s) | 222 |
| BsaI | GGTCTC | 1 cut(s) | 1243 |
| BsaJI | CCNNGG | 7 cut(s) | 76, 119, 153, 280, 375, 393, 1464 |
| BsaWI | WCCGGW | 2 cut(s) | 21, 1263 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 86, 116 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 78, 465, 1270 |
| Bse118I | RCCGGY | 2 cut(s) | 21, 71 |
| Bse3DI | GCAATG | 1 cut(s) | 1203 |
| BseAI | TCCGGA | 1 cut(s) | 1263 |
| BseBI | CCWGG | 2 cut(s) | 77, 155 |
| BseDI | CCNNGG | 7 cut(s) | 76, 119, 153, 280, 375, 393, 1464 |
| BseGI | GGATG | 6 cut(s) | 233, 502, 700, 745, 1333, 1456 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 78, 465, 1270 |
| BseMI | GCAATG | 1 cut(s) | 1203 |
| BseMII | CTCAG | 6 cut(s) | 302, 633, 713, 853, 930, 1368 |
| BseRI | GAGGAG | 2 cut(s) | 175, 1394 |
| BseXI | GCAGC | 4 cut(s) | 188, 916, 919, 1081 |
| BseYI | CCCAGC | 1 cut(s) | 925 |
| BsgI | GTGCAG | 3 cut(s) | 348, 872, 1512 |
| BshFI | GGCC | 4 cut(s) | 75, 361, 446, 833 |
| BshNI | GGYRCC | 1 cut(s) | 58 |
| BshTI | ACCGGT | 1 cut(s) | 21 |
| BsiHKAI | GWGCWC | 2 cut(s) | 138, 328 |
| BsiHKCI | CYCGRG | 1 cut(s) | 137 |
| BsiSI | CCGG | 4 cut(s) | 22, 72, 334, 1264 |
| BslFI | GGGAC | 1 cut(s) | 666 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 78, 465, 1270 |
| BsmAI | GTCTC | 5 cut(s) | 44, 213, 787, 899, 1243 |
| BsmBI | CGTCTC | 2 cut(s) | 44, 213 |
| BsmFI | GGGAC | 1 cut(s) | 666 |
| BsnI | GGCC | 4 cut(s) | 75, 361, 446, 833 |
| Bso31I | GGTCTC | 1 cut(s) | 1243 |
| BsoBI | CYCGRG | 1 cut(s) | 137 |
| Bsp119I | TTCGAA | 1 cut(s) | 1532 |
| Bsp1286I | GDGCHC | 2 cut(s) | 138, 328 |
| Bsp13I | TCCGGA | 1 cut(s) | 1263 |
| Bsp1407I | TGTACA | 1 cut(s) | 898 |
| Bsp143I | GATC | 7 cut(s) | 252, 330, 817, 1123, 1260, 1335, 1468 |
| Bsp19I | CCATGG | 1 cut(s) | 280 |
| BspANI | GGCC | 4 cut(s) | 75, 361, 446, 833 |
| BspCNI | CTCAG | 6 cut(s) | 303, 634, 712, 852, 931, 1369 |
| BspEI | TCCGGA | 1 cut(s) | 1263 |
| BspLI | GGNNCC | 4 cut(s) | 60, 332, 834, 1470 |
| BspMI | ACCTGC | 2 cut(s) | 172, 287 |
| BspPI | GGATC | 6 cut(s) | 325, 338, 812, 1255, 1463, 1476 |
| BspQI | GCTCTTC | 1 cut(s) | 418 |
| BspT104I | TTCGAA | 1 cut(s) | 1532 |
| BspT107I | GGYRCC | 1 cut(s) | 58 |
| BspTNI | GGTCTC | 1 cut(s) | 1243 |
| BsrDI | GCAATG | 1 cut(s) | 1203 |
| BsrFI | RCCGGY | 2 cut(s) | 21, 71 |
| BsrGI | TGTACA | 1 cut(s) | 898 |
| BssAI | RCCGGY | 2 cut(s) | 21, 71 |
| BssECI | CCNNGG | 7 cut(s) | 76, 119, 153, 280, 375, 393, 1464 |
| BssMI | GATC | 7 cut(s) | 252, 330, 817, 1123, 1260, 1335, 1468 |
| BssNI | GRCGYC | 1 cut(s) | 222 |
| BssSI | CACGAG | 1 cut(s) | 128 |
| BssT1I | CCWWGG | 5 cut(s) | 119, 280, 375, 393, 1464 |
| Bst2BI | CACGAG | 1 cut(s) | 128 |
| Bst2UI | CCWGG | 2 cut(s) | 77, 155 |
| Bst4CI | ACNGT | 7 cut(s) | 58, 265, 533, 541, 587, 1098, 1294 |
| Bst6I | CTCTTC | 2 cut(s) | 418, 641 |
| BstACI | GRCGYC | 1 cut(s) | 222 |
| BstAUI | TGTACA | 1 cut(s) | 898 |
| BstBI | TTCGAA | 1 cut(s) | 1532 |
| BstC8I | GCNNGC | 2 cut(s) | 363, 1495 |
| BstDEI | CTNAG | 9 cut(s) | 311, 642, 699, 761, 839, 939, 1377, 1398, 1418 |
| BstDSI | CCRYGG | 1 cut(s) | 280 |
| BstF5I | GGATG | 6 cut(s) | 233, 502, 700, 745, 1333, 1456 |
| BstH2I | RGCGCY | 1 cut(s) | 415 |
| BstHHI | GCGC | 2 cut(s) | 201, 414 |
| BstKTI | GATC | 7 cut(s) | 255, 333, 820, 1126, 1263, 1338, 1471 |
| BstMAI | GTCTC | 5 cut(s) | 44, 213, 787, 899, 1243 |
| BstMBI | GATC | 7 cut(s) | 252, 330, 817, 1123, 1260, 1335, 1468 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 133, 207, 452, 475, 1010, 1340 |
| BstNI | CCWGG | 2 cut(s) | 77, 155 |
| BstSCI | CCNGG | 3 cut(s) | 75, 153, 333 |
| BstSFI | CTRYAG | 2 cut(s) | 1078, 1290 |
| BstV1I | GCAGC | 4 cut(s) | 188, 916, 919, 1081 |
| BstV2I | GAAGAC | 2 cut(s) | 24, 1384 |
| BstX2I | RGATCY | 3 cut(s) | 330, 817, 1468 |
| BstYI | RGATCY | 3 cut(s) | 330, 817, 1468 |
| BsuRI | GGCC | 4 cut(s) | 75, 361, 446, 833 |
| BtgI | CCRYGG | 1 cut(s) | 280 |
| BtrI | CACGTC | 1 cut(s) | 46 |
| BtsCI | GGATG | 6 cut(s) | 233, 502, 700, 745, 1333, 1456 |
| BtsI | GCAGTG | 1 cut(s) | 961 |
| BtsIMutI | CAGTG | 3 cut(s) | 961, 1299, 1374 |
| BveI | ACCTGC | 2 cut(s) | 172, 287 |
| Cac8I | GCNNGC | 2 cut(s) | 363, 1495 |
| CaiI | CAGNNNCTG | 1 cut(s) | 932 |
| CfoI | GCGC | 2 cut(s) | 201, 414 |
| Cfr10I | RCCGGY | 2 cut(s) | 21, 71 |
| Cfr13I | GGNCC | 1 cut(s) | 832 |
| CseI | GACGC | 1 cut(s) | 230 |
| Csp6I | GTAC | 4 cut(s) | 381, 893, 899, 1422 |
| CspAI | ACCGGT | 1 cut(s) | 21 |
| CviAII | CATG | 7 cut(s) | 281, 436, 664, 689, 829, 883, 1127 |
| CviQI | GTAC | 4 cut(s) | 381, 893, 899, 1422 |
| DdeI | CTNAG | 9 cut(s) | 311, 642, 699, 761, 839, 939, 1377, 1398, 1418 |
| DpnI | GATC | 7 cut(s) | 254, 332, 819, 1125, 1262, 1337, 1470 |
| DpnII | GATC | 7 cut(s) | 252, 330, 817, 1123, 1260, 1335, 1468 |
| EaeI | YGGCCR | 2 cut(s) | 73, 444 |
| Eam1104I | CTCTTC | 2 cut(s) | 418, 641 |
| EarI | CTCTTC | 2 cut(s) | 418, 641 |
| Ecl136II | GAGCTC | 1 cut(s) | 136 |
| Eco130I | CCWWGG | 5 cut(s) | 119, 280, 375, 393, 1464 |
| Eco24I | GRGCYC | 1 cut(s) | 138 |
| Eco31I | GGTCTC | 1 cut(s) | 1243 |
| Eco47III | AGCGCT | 1 cut(s) | 413 |
| Eco53kI | GAGCTC | 1 cut(s) | 136 |
| Eco57I | CTGAAG | 1 cut(s) | 1395 |
| Eco88I | CYCGRG | 1 cut(s) | 137 |
| EcoICRI | GAGCTC | 1 cut(s) | 136 |
| EcoRII | CCWGG | 2 cut(s) | 75, 153 |
| EcoT14I | CCWWGG | 5 cut(s) | 119, 280, 375, 393, 1464 |
| EcoT22I | ATGCAT | 2 cut(s) | 690, 1165 |
| EcoT38I | GRGCYC | 1 cut(s) | 138 |
| ErhI | CCWWGG | 5 cut(s) | 119, 280, 375, 393, 1464 |
| Esp3I | CGTCTC | 2 cut(s) | 44, 213 |
| FaeI | CATG | 7 cut(s) | 284, 439, 667, 692, 832, 886, 1130 |
| FaqI | GGGAC | 1 cut(s) | 666 |
| FatI | CATG | 7 cut(s) | 280, 435, 663, 688, 828, 882, 1126 |
| FauNDI | CATATG | 1 cut(s) | 1474 |
| FbaI | TGATCA | 1 cut(s) | 1123 |
| FblI | GTMKAC | 1 cut(s) | 267 |
| Fnu4HI | GCNGC | 4 cut(s) | 202, 930, 933, 1070 |
| FokI | GGATG | 6 cut(s) | 220, 509, 707, 732, 1340, 1463 |
| FriOI | GRGCYC | 1 cut(s) | 138 |
| Fsp4HI | GCNGC | 4 cut(s) | 202, 930, 933, 1070 |
| FspBI | CTAG | 3 cut(s) | 120, 887, 1388 |
| GlaI | GCGC | 2 cut(s) | 200, 413 |
| GluI | GCNGC | 4 cut(s) | 202, 930, 933, 1070 |
| GsaI | CCCAGC | 1 cut(s) | 929 |
| HaeII | RGCGCY | 1 cut(s) | 415 |
| HaeIII | GGCC | 4 cut(s) | 75, 361, 446, 833 |
| HapII | CCGG | 4 cut(s) | 22, 72, 334, 1264 |
| HgaI | GACGC | 1 cut(s) | 230 |
| HhaI | GCGC | 2 cut(s) | 201, 414 |
| Hin1I | GRCGYC | 1 cut(s) | 222 |
| Hin1II | CATG | 7 cut(s) | 284, 439, 667, 692, 832, 886, 1130 |
| Hin6I | GCGC | 2 cut(s) | 199, 412 |
| HinP1I | GCGC | 2 cut(s) | 199, 412 |
| HincII | GTYRAC | 1 cut(s) | 405 |
| HindII | GTYRAC | 1 cut(s) | 405 |
| HpaII | CCGG | 4 cut(s) | 22, 72, 334, 1264 |
| HphI | GGTGA | 3 cut(s) | 16, 76, 1158 |
| Hpy166II | GTNNAC | 3 cut(s) | 84, 268, 405 |
| Hpy188I | TCNGA | 6 cut(s) | 12, 330, 940, 1035, 1243, 1414 |
| Hpy188III | TCNNGA | 6 cut(s) | 139, 248, 515, 1187, 1230, 1264 |
| Hpy8I | GTNNAC | 3 cut(s) | 84, 268, 405 |
| Hpy99I | CGWCG | 3 cut(s) | 47, 58, 230 |
| HpyAV | CCTTC | 2 cut(s) | 1002, 1377 |
| HpyCH4III | ACNGT | 7 cut(s) | 58, 265, 533, 541, 587, 1098, 1294 |
| HpyCH4IV | ACGT | 2 cut(s) | 45, 286 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 133, 207, 452, 475, 1010, 1340 |
| HpyF3I | CTNAG | 9 cut(s) | 311, 642, 699, 761, 839, 939, 1377, 1398, 1418 |
| HpySE526I | ACGT | 2 cut(s) | 45, 286 |
| Hsp92I | GRCGYC | 1 cut(s) | 222 |
| Hsp92II | CATG | 7 cut(s) | 284, 439, 667, 692, 832, 886, 1130 |
| HspAI | GCGC | 2 cut(s) | 199, 412 |
| Kpn2I | TCCGGA | 1 cut(s) | 1263 |
| Ksp22I | TGATCA | 1 cut(s) | 1123 |
| Kzo9I | GATC | 7 cut(s) | 252, 330, 817, 1123, 1260, 1335, 1468 |
| LguI | GCTCTTC | 1 cut(s) | 418 |
| LmnI | GCTCC | 3 cut(s) | 12, 133, 1018 |
| Lsp1109I | GCAGC | 4 cut(s) | 188, 916, 919, 1081 |
| LweI | GCATC | 8 cut(s) | 685, 764, 944, 1150, 1172, 1180, 1396, 1441 |
| MaeI | CTAG | 3 cut(s) | 120, 887, 1388 |
| MaeII | ACGT | 2 cut(s) | 45, 286 |
| MaeIII | GTNAC | 3 cut(s) | 299, 431, 1060 |
| MalI | GATC | 7 cut(s) | 254, 332, 819, 1125, 1262, 1337, 1470 |
| MboI | GATC | 7 cut(s) | 252, 330, 817, 1123, 1260, 1335, 1468 |
| MboII | GAAGA | 8 cut(s) | 29, 432, 435, 451, 658, 912, 1384, 1450 |
| MfeI | CAATTG | 1 cut(s) | 384 |
| MflI | RGATCY | 3 cut(s) | 330, 817, 1468 |
| MhlI | GDGCHC | 2 cut(s) | 138, 328 |
| MlsI | TGGCCA | 1 cut(s) | 446 |
| MluCI | AATT | 5 cut(s) | 384, 1091, 1171, 1517, 1534 |
| MluNI | TGGCCA | 1 cut(s) | 446 |
| MlyI | GAGTC | 5 cut(s) | 16, 563, 760, 901, 1039 |
| Mox20I | TGGCCA | 1 cut(s) | 446 |
| Mph1103I | ATGCAT | 2 cut(s) | 690, 1165 |
| MroI | TCCGGA | 1 cut(s) | 1263 |
| MscI | TGGCCA | 1 cut(s) | 446 |
| MseI | TTAA | 1 cut(s) | 680 |
| MslI | CAYNNNNRTG | 6 cut(s) | 155, 440, 693, 848, 881, 1056 |
| Msp20I | TGGCCA | 1 cut(s) | 446 |
| MspA1I | CMGCKG | 1 cut(s) | 929 |
| MspI | CCGG | 4 cut(s) | 22, 72, 334, 1264 |
| MspR9I | CCNGG | 3 cut(s) | 77, 155, 335 |
| MunI | CAATTG | 1 cut(s) | 384 |
| MvaI | CCWGG | 2 cut(s) | 77, 155 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 133, 207, 452, 475, 1010, 1340 |
| NciI | CCSGG | 1 cut(s) | 335 |
| NcoI | CCATGG | 1 cut(s) | 280 |
| NdeI | CATATG | 1 cut(s) | 1474 |
| NdeII | GATC | 7 cut(s) | 252, 330, 817, 1123, 1260, 1335, 1468 |
| NlaIII | CATG | 7 cut(s) | 284, 439, 667, 692, 832, 886, 1130 |
| NlaIV | GGNNCC | 4 cut(s) | 60, 332, 834, 1470 |
| NmuCI | GTSAC | 2 cut(s) | 299, 1060 |
| NsiI | ATGCAT | 2 cut(s) | 690, 1165 |
| NspV | TTCGAA | 1 cut(s) | 1532 |
| OliI | CACNNNNGTG | 1 cut(s) | 155 |
| PaeR7I | CTCGAG | 1 cut(s) | 137 |
| PciSI | GCTCTTC | 1 cut(s) | 418 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 59, 135 |
| PfeI | GAWTC | 7 cut(s) | 106, 389, 511, 742, 865, 1104, 1226 |
| PflFI | GACNNNGTC | 2 cut(s) | 224, 263 |
| PfoI | TCCNGGA | 1 cut(s) | 333 |
| PinAI | ACCGGT | 1 cut(s) | 21 |
| PkrI | GCNGC | 4 cut(s) | 203, 931, 934, 1071 |
| PleI | GAGTC | 5 cut(s) | 15, 562, 760, 901, 1038 |
| PpsI | GAGTC | 5 cut(s) | 15, 562, 760, 901, 1038 |
| Psp124BI | GAGCTC | 1 cut(s) | 138 |
| Psp6I | CCWGG | 2 cut(s) | 75, 153 |
| PspFI | CCCAGC | 1 cut(s) | 925 |
| PspGI | CCWGG | 2 cut(s) | 75, 153 |
| PspN4I | GGNNCC | 4 cut(s) | 60, 332, 834, 1470 |
| PspPI | GGNCC | 1 cut(s) | 832 |
| PstNI | CAGNNNCTG | 1 cut(s) | 932 |
| PsuI | RGATCY | 3 cut(s) | 330, 817, 1468 |
| PsyI | GACNNNGTC | 2 cut(s) | 224, 263 |
| PvuII | CAGCTG | 1 cut(s) | 929 |
| RsaI | GTAC | 4 cut(s) | 382, 894, 900, 1423 |
| RsaNI | GTAC | 4 cut(s) | 381, 893, 899, 1422 |
| RseI | CAYNNNNRTG | 6 cut(s) | 155, 440, 693, 848, 881, 1056 |
| SacI | GAGCTC | 1 cut(s) | 138 |
| SapI | GCTCTTC | 1 cut(s) | 418 |
| SaqAI | TTAA | 1 cut(s) | 680 |
| SatI | GCNGC | 4 cut(s) | 202, 930, 933, 1070 |
| Sau3AI | GATC | 7 cut(s) | 252, 330, 817, 1123, 1260, 1335, 1468 |
| Sau96I | GGNCC | 1 cut(s) | 832 |
| SchI | GAGTC | 5 cut(s) | 16, 563, 760, 901, 1039 |
| ScrFI | CCNGG | 3 cut(s) | 77, 155, 335 |
| SduI | GDGCHC | 2 cut(s) | 138, 328 |
| SfaNI | GCATC | 8 cut(s) | 685, 764, 944, 1150, 1172, 1180, 1396, 1441 |
| SfcI | CTRYAG | 2 cut(s) | 1078, 1290 |
| Sfr274I | CTCGAG | 1 cut(s) | 137 |
| SfuI | TTCGAA | 1 cut(s) | 1532 |
| SlaI | CTCGAG | 1 cut(s) | 137 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 155, 440, 693, 848, 881, 1056 |
| SmlI | CTYRAG | 1 cut(s) | 137 |
| SmoI | CTYRAG | 1 cut(s) | 137 |
| Sse9I | AATT | 5 cut(s) | 384, 1091, 1171, 1517, 1534 |
| SspI | AATATT | 1 cut(s) | 1150 |
| SspMI | CTAG | 3 cut(s) | 120, 887, 1388 |
| SstI | GAGCTC | 1 cut(s) | 138 |
| StyD4I | CCNGG | 3 cut(s) | 75, 153, 333 |
| StyI | CCWWGG | 5 cut(s) | 119, 280, 375, 393, 1464 |
| TaaI | ACNGT | 7 cut(s) | 58, 265, 533, 541, 587, 1098, 1294 |
| TaiI | ACGT | 2 cut(s) | 48, 289 |
| TaqI | TCGA | 5 cut(s) | 42, 104, 138, 557, 1532 |
| TasI | AATT | 5 cut(s) | 384, 1091, 1171, 1517, 1534 |
| TatI | WGTACW | 1 cut(s) | 898 |
| TfiI | GAWTC | 7 cut(s) | 106, 389, 511, 742, 865, 1104, 1226 |
| Tru1I | TTAA | 1 cut(s) | 680 |
| Tru9I | TTAA | 1 cut(s) | 680 |
| TscAI | CASTG | 3 cut(s) | 961, 1299, 1381 |
| TseFI | GTSAC | 2 cut(s) | 299, 1060 |
| TseI | GCWGC | 4 cut(s) | 201, 929, 932, 1069 |
| Tsp45I | GTSAC | 2 cut(s) | 299, 1060 |
| TspDTI | ATGAA | 8 cut(s) | 222, 452, 524, 674, 680, 993, 1103, 1517 |
| TspGWI | ACGGA | 3 cut(s) | 184, 593, 1005 |
| TspRI | CASTG | 3 cut(s) | 961, 1299, 1381 |
| Tth111I | GACNNNGTC | 2 cut(s) | 224, 263 |
| XapI | RAATTY | 1 cut(s) | 1171 |
| XhoI | CTCGAG | 1 cut(s) | 137 |
| XmaJI | CCTAGG | 1 cut(s) | 119 |
| XmiI | GTMKAC | 1 cut(s) | 267 |
| XspI | CTAG | 3 cut(s) | 120, 887, 1388 |
| Zsp2I | ATGCAT | 2 cut(s) | 690, 1165 |