Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004362

Physical Location & Seq

Genomic Coordinates Forward (+)

57616592 .. 57622609

Gene Structure 6018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0444900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGAGGCAGAGTCGTTCCTCAAAGCAAGAGACTGATCAGTTAATGGAAATAGATGACCTTAGTAAGCTCAAAGAGGAACCTCATCATCTATCTGGTGCTTATATCCGTAGCCTAGTGAAACAACTCACCTCTTCAAGAACCAAAGACACCATGAACCCCAAAGACCTCCTGGACTGTGGCACCAAATTCAGGGAAGGATTTAGTGAAACCCAAAATGCACAGCAATCCCAACAACCTCAACAGCACAAAAAACAAGTAAGGAGGAGACTCCACACCAGTAGACCTTACCAAGAAAGGCTCTTAAACATGGCTGAGGCTAGGAGGGAGATTGTCACTGCTCTAAAGTTTCATAGAGCGGCTATGAAACAAGCCAGTGAACAACAGCAACAACATCAAGAACAAGAACAACAGCCACAATCGCAACAATTGCTGCCTCAACCCCACCCATGCTCTGAGCCAGAAGGAAGGATTAAATCTAGGAGAAATCCTAGAATTTACCCATCAAATTCAACCAATTATCTTGAAACCCTGCCTTACTCATCCAATTTTTCTCATCAATATCCCTCTGTTCCTAATCAATTTTCCTGGAGTTCTACTTCCAGAATTCCTCCTCCACCTGTTTATGAAAACTTCGATTTCACAGCTCTTCCAAGCCAGACCCTCGGCCTGAACCTCAACTTTCAAGATTTCAACAATATAAACACTACCCTTTACCACAACAGCAACAGTCCCCCGTTTTACTCAACCTCAGGCTCAGTCTCATTCTCAGCCTCGGCCTCATCTCCATCATCATCTTCTTCCCCTAGTCTTTCTATTGCCACTGATCATGAACTTCCTGGTTCATCAGCCGCGATATCACACATGGAAATGGAGGCCCCTGCTGTAGCTGATGTTGACGACTCTGGCATCACTACTAGCGGTGGAGATGGCTTGCATGCAGCAATGGATGATGAGGAGATGGCGGAGATCAGATCAATCGGAGAGCAGCATCAGATGGAATGGAATGACACCATGAATTTGGTAACTTCAGCATGGTGGTTCAAGTTCTTAAAGGCTGAAGATGATGATGGATGCCACCTTCCATTTGATGAAGTCCTGGAGTTTCCAGCCTGGCTGAATGCAAATGAGGGCAGTTTTCAACAACATTTGAATGATTACTACTCAGCAGATTATTTTCAAGATCCTGCCTTGCCTTGCATGGACATTGGAGAATTTGAAGGTTTTGATGGTGAATGGCTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008408 GO:0009380 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0030312 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:1901360 GO:1902494 GO:1905347 GO:1905348 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

414

Amino Acids

46.9

Weight (kDa)

5.0

Isoelectric Point (pI)

64.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74390 AT1G74390 AT1G74390 AT1G74390 AT5G07710 AT5G61390
fragaria_vesca	FvH4_5g14590 FvH4_5g14590 FvH4_5g14590
malus_domestica	MD06G1197200.v1.1 MD14G1204200.v1.1 MD14G1204300.v1.1 MD14G1204400.v1.1
prunus_persica	Prupe.5G197500_v2.0.a1 Prupe.5G197500_v2.0.a1 Prupe.5G197700_v2.0.a1
pyrus_communis	pycom06g17400 pycom14g16890
rosa_chinensis	RchiOBHm_Chr7g0181951 RchiOBHm_Chr7g0181981
rosa_laevigata	RLG00000005164
rosa_roxburghii	Rroxscaffold_3G00271650
rosa_rugosa	Rorug06G0444900
rosa_samantha	Rh7AG047200 Rh7BG046800 Rh7BG047100 Rh7CG047300 Rh7CG047400 Rh7DG046300 Rh7DG046400
rosa_wichuraiana	Rw0G019670 Rw7G003910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AccBSI	CCGCTC	1 cut(s)	356
AccI	GTMKAC	1 cut(s)	280
AccII	CGCG	1 cut(s)	851
AciI	CCGC	4 cut(s)	356, 849, 918, 962
AclWI	GGATC	1 cut(s)	1175
AcsI	RAATTY	6 cut(s)	185, 492, 505, 603, 1015, 1211
AcuI	CTGAAG	2 cut(s)	1011, 1077
AfiI	CCNNNNNNNGG	1 cut(s)	189
AjnI	CCWGG	5 cut(s)	168, 584, 835, 1095, 1109
AluBI	AGCT	4 cut(s)	67, 644, 887, 1241
AluI	AGCT	4 cut(s)	67, 644, 887, 1241
Alw26I	GTCTC	3 cut(s)	23, 259, 763
AlwI	GGATC	1 cut(s)	1175
AoxI	GGCC	3 cut(s)	664, 774, 873
ApeKI	GCWGC	3 cut(s)	430, 938, 985
ApoI	RAATTY	6 cut(s)	185, 492, 505, 603, 1015, 1211
AspS9I	GGNCC	1 cut(s)	874
AsuHPI	GGTGA	2 cut(s)	118, 1241
AsuNHI	GCTAGC	1 cut(s)	1237
AxyI	CCTNAGG	1 cut(s)	748
BanI	GGYRCC	1 cut(s)	179
BbvCI	CCTCAGC	1 cut(s)	312
BbvI	GCAGC	3 cut(s)	417, 950, 997
BccI	CCATC	7 cut(s)	508, 793, 920, 952, 988, 1061, 1220
BciT130I	CCWGG	5 cut(s)	170, 586, 837, 1097, 1111
BclI	TGATCA	2 cut(s)	34, 823
BcoDI	GTCTC	3 cut(s)	23, 259, 763
BfaI	CTAG	7 cut(s)	113, 318, 477, 489, 804, 915, 1238
BfmI	CTRYAG	1 cut(s)	882
BisI	GCNGC	5 cut(s)	357, 431, 849, 939, 986
BlsI	GCNGC	5 cut(s)	358, 432, 850, 940, 987
Bme1390I	CCNGG	5 cut(s)	170, 586, 837, 1097, 1111
BmgT120I	GGNCC	1 cut(s)	874
BmiI	GGNNCC	3 cut(s)	78, 181, 876
BmrFI	CCNGG	5 cut(s)	170, 586, 837, 1097, 1111
BmsI	GCATC	3 cut(s)	915, 997, 1061
BmtI	GCTAGC	1 cut(s)	1241
BpmI	CTGGAG	2 cut(s)	607, 1118
Bpu10I	CCTNAGC	1 cut(s)	312
BsaJI	CCNNGG	2 cut(s)	661, 771
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse1I	ACTGG	2 cut(s)	276, 372
Bse21I	CCTNAGG	1 cut(s)	748
Bse3DI	GCAATG	1 cut(s)	948
BseBI	CCWGG	5 cut(s)	170, 586, 837, 1097, 1111
BseDI	CCNNGG	2 cut(s)	661, 771
BseGI	GGATG	3 cut(s)	539, 952, 1076
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMI	GCAATG	1 cut(s)	948
BseMII	CTCAG	6 cut(s)	303, 444, 762, 768, 780, 1176
BseNI	ACTGG	2 cut(s)	276, 372
BseRI	GAGGAG	3 cut(s)	277, 600, 968
BseXI	GCAGC	3 cut(s)	417, 950, 997
Bsh1236I	CGCG	1 cut(s)	851
BshFI	GGCC	3 cut(s)	666, 776, 875
BshNI	GGYRCC	1 cut(s)	179
BslFI	GGGAC	1 cut(s)	714
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	3 cut(s)	23, 259, 763
BsmFI	GGGAC	1 cut(s)	714
BsmI	GAATGC	1 cut(s)	1123
BsnI	GGCC	3 cut(s)	666, 776, 875
Bsp143I	GATC	5 cut(s)	34, 823, 966, 971, 1180
BspACI	CCGC	4 cut(s)	356, 849, 918, 962
BspANI	GGCC	3 cut(s)	666, 776, 875
BspCNI	CTCAG	6 cut(s)	304, 445, 761, 767, 779, 1175
BspFNI	CGCG	1 cut(s)	851
BspHI	TCATGA	1 cut(s)	826
BspLI	GGNNCC	3 cut(s)	78, 181, 876
BspOI	GCTAGC	1 cut(s)	1241
BspPI	GGATC	1 cut(s)	1175
BspQI	GCTCTTC	1 cut(s)	651
BspT107I	GGYRCC	1 cut(s)	179
BsrBI	CCGCTC	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	948
BsrI	ACTGG	2 cut(s)	276, 372
BssECI	CCNNGG	2 cut(s)	661, 771
BssMI	GATC	5 cut(s)	34, 823, 966, 971, 1180
Bst2UI	CCWGG	5 cut(s)	170, 586, 837, 1097, 1111
Bst4CI	ACNGT	2 cut(s)	176, 728
Bst6I	CTCTTC	2 cut(s)	136, 651
BstAPI	GCANNNNNTGC	1 cut(s)	427
BstC8I	GCNNGC	3 cut(s)	932, 936, 1239
BstDEI	CTNAG	7 cut(s)	59, 312, 453, 748, 754, 766, 1162
BstF5I	GGATG	3 cut(s)	539, 952, 1076
BstFNI	CGCG	1 cut(s)	851
BstKTI	GATC	5 cut(s)	37, 826, 969, 974, 1183
BstMAI	GTCTC	3 cut(s)	23, 259, 763
BstMBI	GATC	5 cut(s)	34, 823, 966, 971, 1180
BstMWI	GCNNNNNNNGC	2 cut(s)	418, 427
BstNI	CCWGG	5 cut(s)	170, 586, 837, 1097, 1111
BstNSI	RCATGY	1 cut(s)	938
BstSCI	CCNGG	5 cut(s)	168, 584, 835, 1095, 1109
BstSFI	CTRYAG	1 cut(s)	882
BstUI	CGCG	1 cut(s)	851
BstV1I	GCAGC	3 cut(s)	417, 950, 997
BstX2I	RGATCY	1 cut(s)	1180
BstXI	CCANNNNNNTGG	1 cut(s)	1018
BstYI	RGATCY	1 cut(s)	1180
Bsu36I	CCTNAGG	1 cut(s)	748
BsuRI	GGCC	3 cut(s)	666, 776, 875
BtsCI	GGATG	3 cut(s)	539, 952, 1076
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	3 cut(s)	333, 379, 819
Cac8I	GCNNGC	3 cut(s)	932, 936, 1239
CciI	TCATGA	1 cut(s)	826
Cfr13I	GGNCC	1 cut(s)	874
CviAII	CATG	9 cut(s)	151, 307, 447, 827, 862, 935, 1012, 1032, 1198
DdeI	CTNAG	7 cut(s)	59, 312, 453, 748, 754, 766, 1162
DpnI	GATC	5 cut(s)	36, 825, 968, 973, 1182
DpnII	GATC	5 cut(s)	34, 823, 966, 971, 1180
Eam1104I	CTCTTC	2 cut(s)	136, 651
EarI	CTCTTC	2 cut(s)	136, 651
EciI	GGCGGA	1 cut(s)	977
Eco32I	GATATC	1 cut(s)	855
Eco57I	CTGAAG	2 cut(s)	1011, 1077
Eco81I	CCTNAGG	1 cut(s)	748
EcoO109I	RGGNCCY	1 cut(s)	874
EcoRI	GAATTC	1 cut(s)	603
EcoRII	CCWGG	5 cut(s)	168, 584, 835, 1095, 1109
EcoRV	GATATC	1 cut(s)	855
FaeI	CATG	9 cut(s)	154, 310, 450, 830, 865, 938, 1015, 1035, 1201
FaqI	GGGAC	1 cut(s)	714
FatI	CATG	9 cut(s)	150, 306, 446, 826, 861, 934, 1011, 1031, 1197
FbaI	TGATCA	2 cut(s)	34, 823
FblI	GTMKAC	1 cut(s)	280
Fnu4HI	GCNGC	5 cut(s)	357, 431, 849, 939, 986
FokI	GGATG	3 cut(s)	526, 959, 1083
Fsp4HI	GCNGC	5 cut(s)	357, 431, 849, 939, 986
FspBI	CTAG	7 cut(s)	113, 318, 477, 489, 804, 915, 1238
GluI	GCNGC	5 cut(s)	357, 431, 849, 939, 986
GsuI	CTGGAG	2 cut(s)	607, 1118
HaeIII	GGCC	3 cut(s)	666, 776, 875
Hin1II	CATG	9 cut(s)	154, 310, 450, 830, 865, 938, 1015, 1035, 1201
HincII	GTYRAC	1 cut(s)	895
HindII	GTYRAC	1 cut(s)	895
HinfI	GANTC	3 cut(s)	10, 267, 899
HphI	GGTGA	2 cut(s)	118, 1241
Hpy166II	GTNNAC	3 cut(s)	281, 377, 895
Hpy188I	TCNGA	4 cut(s)	454, 971, 980, 993
Hpy188III	TCNNGA	7 cut(s)	135, 395, 521, 600, 683, 827, 1178
Hpy8I	GTNNAC	3 cut(s)	281, 377, 895
HpyAV	CCTTC	5 cut(s)	188, 455, 459, 1088, 1211
HpyCH4III	ACNGT	2 cut(s)	176, 728
HpyCH4V	TGCA	5 cut(s)	218, 934, 938, 1121, 1197
HpyF10VI	GCNNNNNNNGC	2 cut(s)	418, 427
HpyF3I	CTNAG	7 cut(s)	59, 312, 453, 748, 754, 766, 1162
Hsp92II	CATG	9 cut(s)	154, 310, 450, 830, 865, 938, 1015, 1035, 1201
Ksp22I	TGATCA	2 cut(s)	34, 823
Kzo9I	GATC	5 cut(s)	34, 823, 966, 971, 1180
LguI	GCTCTTC	1 cut(s)	651
Lsp1109I	GCAGC	3 cut(s)	417, 950, 997
LweI	GCATC	3 cut(s)	915, 997, 1061
MaeI	CTAG	7 cut(s)	113, 318, 477, 489, 804, 915, 1238
MaeIII	GTNAC	2 cut(s)	331, 1021
MalI	GATC	5 cut(s)	36, 825, 968, 973, 1182
MbiI	CCGCTC	1 cut(s)	356
MboI	GATC	5 cut(s)	34, 823, 966, 971, 1180
MboII	GAAGA	5 cut(s)	123, 638, 786, 789, 1070
MfeI	CAATTG	1 cut(s)	425
MflI	RGATCY	1 cut(s)	1180
MlyI	GAGTC	3 cut(s)	19, 261, 893
MseI	TTAA	4 cut(s)	41, 302, 471, 1049
MslI	CAYNNNNRTG	2 cut(s)	866, 1149
MspR9I	CCNGG	5 cut(s)	170, 586, 837, 1097, 1111
MunI	CAATTG	1 cut(s)	425
Mva1269I	GAATGC	1 cut(s)	1123
MvaI	CCWGG	5 cut(s)	170, 586, 837, 1097, 1111
MvnI	CGCG	1 cut(s)	851
MwoI	GCNNNNNNNGC	2 cut(s)	418, 427
NdeII	GATC	5 cut(s)	34, 823, 966, 971, 1180
NheI	GCTAGC	1 cut(s)	1237
NlaIII	CATG	9 cut(s)	154, 310, 450, 830, 865, 938, 1015, 1035, 1201
NlaIV	GGNNCC	3 cut(s)	78, 181, 876
NmeAIII	GCCGAG	2 cut(s)	642, 752
NmuCI	GTSAC	1 cut(s)	331
NspI	RCATGY	1 cut(s)	938
PaeI	GCATGC	1 cut(s)	938
PagI	TCATGA	1 cut(s)	826
PciSI	GCTCTTC	1 cut(s)	651
PctI	GAATGC	1 cut(s)	1123
PfoI	TCCNGGA	3 cut(s)	168, 584, 1095
PkrI	GCNGC	5 cut(s)	358, 432, 850, 940, 987
PleI	GAGTC	3 cut(s)	18, 261, 893
PpsI	GAGTC	3 cut(s)	18, 261, 893
Psp6I	CCWGG	5 cut(s)	168, 584, 835, 1095, 1109
PspGI	CCWGG	5 cut(s)	168, 584, 835, 1095, 1109
PspN4I	GGNNCC	3 cut(s)	78, 181, 876
PspPI	GGNCC	1 cut(s)	874
PsuI	RGATCY	1 cut(s)	1180
RseI	CAYNNNNRTG	2 cut(s)	866, 1149
SapI	GCTCTTC	1 cut(s)	651
SaqAI	TTAA	4 cut(s)	41, 302, 471, 1049
SatI	GCNGC	5 cut(s)	357, 431, 849, 939, 986
Sau3AI	GATC	5 cut(s)	34, 823, 966, 971, 1180
Sau96I	GGNCC	1 cut(s)	874
SchI	GAGTC	3 cut(s)	19, 261, 893
ScrFI	CCNGG	5 cut(s)	170, 586, 837, 1097, 1111
SfaNI	GCATC	3 cut(s)	915, 997, 1061
SfcI	CTRYAG	1 cut(s)	882
SmiMI	CAYNNNNRTG	2 cut(s)	866, 1149
SphI	GCATGC	1 cut(s)	938
SsiI	CCGC	4 cut(s)	356, 849, 918, 962
SspMI	CTAG	7 cut(s)	113, 318, 477, 489, 804, 915, 1238
StyD4I	CCNGG	5 cut(s)	168, 584, 835, 1095, 1109
TaaI	ACNGT	2 cut(s)	176, 728
TaqI	TCGA	1 cut(s)	633
TauI	GCSGC	2 cut(s)	359, 851
Tru1I	TTAA	4 cut(s)	41, 302, 471, 1049
Tru9I	TTAA	4 cut(s)	41, 302, 471, 1049
TscAI	CASTG	3 cut(s)	340, 379, 826
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	3 cut(s)	430, 938, 985
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	8 cut(s)	167, 338, 377, 639, 831, 843, 1028, 1104
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	3 cut(s)	340, 379, 826
XapI	RAATTY	6 cut(s)	185, 492, 505, 603, 1015, 1211
XceI	RCATGY	1 cut(s)	938
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	280
XspI	CTAG	7 cut(s)	113, 318, 477, 489, 804, 915, 1238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.