Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004362

Physical Location & Seq

Genomic Coordinates Forward (+)

3397013 .. 3400207

Gene Structure 3195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16232

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

ATGAGCCCAAAGCAAGCCTTTCCTATAAATATTCTATCCGCCTTGGCGGTAATCCTCGACACTATTTTCCCTCTTTTATCTCAGTATCTACCAATCATGAGTCGGAGCGGCGAGGACCGGTTCGAGATCGCGTTCTTCGACGTGGAGACGACGGTGCCGACCCGACCCGGTCAGGGCTTCGCCTTATTGGAATTCGGATCCATCCTTGTTTGCCCCAGGAAGCTGATTGAGCTCGAGAGCTACTCCACTCTAATCCGACCCGCCGACCTCAATTCCATCAACTCCCTGTCCGTCCGCTGTAACGGCATTACCCGAGACGCCGTCATCGCCGCCCCGGGCTTCGATAAGATCGCCGATAGAGTTTTCGATATTCTCCATGGACGTATATGGGCCGGTCATAATATATTGAGGTTTGATTGCCCCCGGATTCGGGAGGCTTTTGCAAATATTGGTCGACCTGCACCAGAACCCAAAGGTACAATTGATTCTTTGGCTTTGTTGACTCAGCGATTTGGAAGGAGAGCTGGAAACATGAAGATGGCCACTCTTGCAGCTTATTTTGGTCTTGGACAACAGACACACAGGAGTTTGGATGATGTTCGATTGAATCTTGAAGTACTCAAATATTGTGCTACAGTTTTATTCTTGGAGTCCAGCCTCCCGGACATATTAACAGAGAACAGCTGGGTTTCTCCAAATGCTACAACAAGAAGTCGAAGTGTTGGAAAGTCATCTCCTGAGGGGTCAAGCATGAACATAAATATTTCAAATCAAACAGGGGACAATCATCCAATAACATCTCTTAGGACTGAGACCACACAAGAAGTCTCTAATTTGCTTGAGACTGTCGAGTCCAGCACAAATCGACCAGAACCTTTTGACATGGGCCCACTTATCAACGAAGTGAAGAATGAGTTATTAGATCAGCAAGACATCAACATGGTGGAAATACCTGCACAAGAGTCTCCCAACAGTTCTCTCAATGCTTCTGTGACCAACAACTGTAATGCCACCATGGATTTTTTACAGCTCGATCAAGTTTTCATTCCTTATATCAGTGCTTCGCTTGTTCCATTGTATCGTGGGAGTCAAAGGATAAAGTTATTACACAAAGATGTCACTTTGCAGCTTTGCTGCAGTCATATGAAATTGCGTTTTGGAATCAATACGAAGTTTTTTGATCATGCTGGCCGACCACGACTGAATATTGTCTTTGATGCACCACCAAAATTATGTGAAGTTCTTGATGCATGCGATGGCCTTGCAAAGAAGTTGTCTTTGGACTCTGGAAGTAGCTCTGAATGGAGGCCTGTTGTGATCCGCAAACAGGGCTTCTACAACTACGCTACTGTGAGATTGCACATACAAACTGCAGTATGCGGAGACATTGCAATCTACGCCACAGAGATATATCAAAGAGACCCCTCTGGCACCGAGCAAGGGCTAGTCTTCTCTAAATTTGATGCTTCAGAACTTGGTGCCTTGTTCACCCGAGGGATGTTTATGGATGTGTTCTTCTCTTTGGATCCATATGACTATCAGCAGAGTGCAGGCATTCGGTTGGTGGCAAAGAAACTGATTATTCATTCCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008408 GO:0009380 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0030312 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:1901360 GO:1902494 GO:1905347 GO:1905348 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

531

Amino Acids

59.0

Weight (kDa)

6.05

Isoelectric Point (pI)

52.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	45 - 207	4.2e-24	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74390 AT1G74390 AT1G74390 AT1G74390 AT5G07710 AT5G61390
fragaria_vesca	FvH4_5g14590 FvH4_5g14590 FvH4_5g14590
malus_domestica	MD06G1197200.v1.1 MD14G1204200.v1.1 MD14G1204300.v1.1 MD14G1204400.v1.1
prunus_persica	Prupe.5G197500_v2.0.a1 Prupe.5G197500_v2.0.a1 Prupe.5G197700_v2.0.a1
pyrus_communis	pycom06g17400 pycom14g16890
rosa_chinensis	RchiOBHm_Chr7g0181951 RchiOBHm_Chr7g0181981
rosa_laevigata	RLG00000005164
rosa_roxburghii	Rroxscaffold_3G00271650
rosa_rugosa	Rorug06G0444900
rosa_samantha	Rh7AG047200 Rh7BG046800 Rh7BG047100 Rh7CG047300 Rh7CG047400 Rh7DG046300 Rh7DG046400
rosa_wichuraiana	Rw0G019670 Rw7G003910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	850
Acc36I	ACCTGC	2 cut(s)	466, 961
AccB1I	GGYRCC	3 cut(s)	154, 1430, 1478
AccBSI	CCGCTC	1 cut(s)	108
AccI	GTMKAC	1 cut(s)	454
AccII	CGCG	1 cut(s)	131
AciI	CCGC	8 cut(s)	39, 47, 108, 261, 295, 330, 1321, 1380
AclWI	GGATC	5 cut(s)	192, 205, 1312, 1520, 1533
AcoI	YGGCCR	2 cut(s)	540, 1189
AcsI	RAATTY	2 cut(s)	191, 1457
AcuI	CTGAAG	1 cut(s)	1452
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	2 cut(s)	478, 618
AfiI	CCNNNNNNNGG	5 cut(s)	173, 429, 430, 1327, 1440
AgeI	ACCGGT	1 cut(s)	117
AgsI	TTSAA	3 cut(s)	607, 614, 768
AjiI	CACGTC	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	215
AjuI	GAANNNNNNNTTGG	2 cut(s)	1262, 1294
AluBI	AGCT	9 cut(s)	223, 232, 240, 524, 554, 684, 1030, 1129, 1296
AluI	AGCT	9 cut(s)	223, 232, 240, 524, 554, 684, 1030, 1129, 1296
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	8 cut(s)	140, 309, 806, 832, 836, 969, 1377, 1413
AlwI	GGATC	5 cut(s)	192, 205, 1312, 1520, 1533
Ama87I	CYCGRG	4 cut(s)	233, 312, 334, 1491
AoxI	GGCC	6 cut(s)	390, 540, 886, 1189, 1258, 1307
ApaI	GGGCCC	1 cut(s)	890
ApeKI	GCWGC	3 cut(s)	551, 1126, 1134
ApoI	RAATTY	2 cut(s)	191, 1457
ArsI	GACNNNNNNTTYG	2 cut(s)	1259, 1291
AsiGI	ACCGGT	1 cut(s)	117
AspS9I	GGNCC	4 cut(s)	115, 390, 886, 887
AsuC2I	CCSGG	5 cut(s)	168, 335, 336, 424, 662
AsuHPI	GGTGA	1 cut(s)	1480
AvaI	CYCGRG	4 cut(s)	233, 312, 334, 1491
AvaII	GGWCC	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	738
BaeGI	GKGCMC	1 cut(s)	890
BalI	TGGCCA	1 cut(s)	542
BamHI	GGATCC	2 cut(s)	197, 1525
BanI	GGYRCC	3 cut(s)	154, 1430, 1478
BanII	GRGCYC	3 cut(s)	8, 234, 890
BbsI	GAAGAC	1 cut(s)	1441
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	3 cut(s)	563, 1121, 1138
BccI	CCATC	4 cut(s)	209, 284, 532, 1250
BceAI	ACGGC	2 cut(s)	305, 319
BcgI	CGANNNNNNTGC	2 cut(s)	1244, 1278
BciT130I	CCWGG	1 cut(s)	217
BclI	TGATCA	1 cut(s)	1180
BcnI	CCSGG	5 cut(s)	168, 335, 336, 424, 662
BcoDI	GTCTC	8 cut(s)	140, 309, 806, 832, 836, 969, 1377, 1413
BfaI	CTAG	1 cut(s)	1445
BfmI	CTRYAG	3 cut(s)	633, 1135, 1371
BfuAI	ACCTGC	2 cut(s)	466, 961
BisI	GCNGC	5 cut(s)	109, 330, 552, 1127, 1135
BlsI	GCNGC	5 cut(s)	110, 331, 553, 1128, 1136
BmcAI	AGTACT	1 cut(s)	618
Bme1390I	CCNGG	6 cut(s)	168, 217, 335, 336, 424, 662
Bme18I	GGWCC	1 cut(s)	115
BmeT110I	CYCGRG	4 cut(s)	233, 312, 334, 1491
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	4 cut(s)	115, 390, 886, 887
BmiI	GGNNCC	6 cut(s)	156, 199, 888, 1432, 1480, 1527
BmrFI	CCNGG	6 cut(s)	168, 217, 335, 336, 424, 662
BmsI	GCATC	3 cut(s)	1207, 1237, 1453
BpiI	GAAGAC	1 cut(s)	1441
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
BpuEI	CTTGAG	1 cut(s)	860
BpuMI	CCSGG	5 cut(s)	168, 335, 336, 424, 662
BsaHI	GRCGYC	1 cut(s)	318
BsaI	GGTCTC	2 cut(s)	806, 1413
BsaJI	CCNNGG	8 cut(s)	42, 215, 333, 334, 376, 422, 1014, 1492
BsaWI	WCCGGW	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	5 cut(s)	173, 429, 430, 1327, 1440
Bse118I	RCCGGY	2 cut(s)	117, 392
Bse21I	CCTNAGG	1 cut(s)	738
Bse3DI	GCAATG	1 cut(s)	1386
BseBI	CCWGG	1 cut(s)	217
BseDI	CCNNGG	8 cut(s)	42, 215, 333, 334, 376, 422, 1014, 1492
BseGI	GGATG	5 cut(s)	201, 598, 787, 1503, 1513
BseLI	CCNNNNNNNGG	5 cut(s)	173, 429, 430, 1327, 1440
BseMI	GCAATG	1 cut(s)	1386
BseMII	CTCAG	4 cut(s)	95, 518, 729, 801
BseSI	GKGCMC	1 cut(s)	890
BseXI	GCAGC	3 cut(s)	563, 1121, 1138
BseYI	CCCAGC	1 cut(s)	684
BsgI	GTGCAG	3 cut(s)	444, 939, 1569
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	6 cut(s)	392, 542, 888, 1191, 1260, 1309
BshNI	GGYRCC	3 cut(s)	154, 1430, 1478
BshTI	ACCGGT	1 cut(s)	117
BsiHKAI	GWGCWC	1 cut(s)	234
BsiHKCI	CYCGRG	4 cut(s)	233, 312, 334, 1491
BsiSI	CCGG	6 cut(s)	118, 168, 335, 393, 424, 662
BslFI	GGGAC	1 cut(s)	794
BslI	CCNNNNNNNGG	5 cut(s)	173, 429, 430, 1327, 1440
BsmAI	GTCTC	8 cut(s)	140, 309, 806, 832, 836, 969, 1377, 1413
BsmBI	CGTCTC	2 cut(s)	140, 309
BsmFI	GGGAC	1 cut(s)	794
BsmI	GAATGC	1 cut(s)	1554
BsnI	GGCC	6 cut(s)	392, 542, 888, 1191, 1260, 1309
Bso31I	GGTCTC	2 cut(s)	806, 1413
BsoBI	CYCGRG	4 cut(s)	233, 312, 334, 1491
Bsp120I	GGGCCC	1 cut(s)	886
Bsp1286I	GDGCHC	3 cut(s)	8, 234, 890
Bsp143I	GATC	8 cut(s)	126, 197, 348, 922, 1033, 1180, 1317, 1525
Bsp19I	CCATGG	2 cut(s)	376, 1014
BspACI	CCGC	8 cut(s)	39, 47, 108, 261, 295, 330, 1321, 1380
BspANI	GGCC	6 cut(s)	392, 542, 888, 1191, 1260, 1309
BspCNI	CTCAG	4 cut(s)	94, 517, 730, 802
BspFNI	CGCG	1 cut(s)	131
BspHI	TCATGA	1 cut(s)	96
BspLI	GGNNCC	6 cut(s)	156, 199, 888, 1432, 1480, 1527
BspMAI	CTGCAG	2 cut(s)	1139, 1375
BspMI	ACCTGC	2 cut(s)	466, 961
BspPI	GGATC	5 cut(s)	192, 205, 1312, 1520, 1533
BspT107I	GGYRCC	3 cut(s)	154, 1430, 1478
BspTNI	GGTCTC	2 cut(s)	806, 1413
BsrBI	CCGCTC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	1386
BsrFI	RCCGGY	2 cut(s)	117, 392
BssAI	RCCGGY	2 cut(s)	117, 392
BssECI	CCNNGG	8 cut(s)	42, 215, 333, 334, 376, 422, 1014, 1492
BssMI	GATC	8 cut(s)	126, 197, 348, 922, 1033, 1180, 1317, 1525
BssNI	GRCGYC	1 cut(s)	318
BssT1I	CCWWGG	3 cut(s)	42, 376, 1014
Bst2UI	CCWGG	1 cut(s)	217
Bst4CI	ACNGT	6 cut(s)	154, 637, 847, 974, 1004, 1351
BstACI	GRCGYC	1 cut(s)	318
BstC8I	GCNNGC	4 cut(s)	15, 1189, 1252, 1552
BstDEI	CTNAG	5 cut(s)	81, 504, 738, 803, 810
BstDSI	CCRYGG	2 cut(s)	376, 1014
BstF5I	GGATG	5 cut(s)	201, 598, 787, 1503, 1513
BstFNI	CGCG	1 cut(s)	131
BstKTI	GATC	8 cut(s)	129, 200, 351, 925, 1036, 1183, 1320, 1528
BstMAI	GTCTC	8 cut(s)	140, 309, 806, 832, 836, 969, 1377, 1413
BstMBI	GATC	8 cut(s)	126, 197, 348, 922, 1033, 1180, 1317, 1525
BstMWI	GCNNNNNNNGC	6 cut(s)	229, 303, 326, 548, 1329, 1397
BstNI	CCWGG	1 cut(s)	217
BstNSI	RCATGY	1 cut(s)	1254
BstSCI	CCNGG	6 cut(s)	166, 215, 333, 334, 422, 660
BstSFI	CTRYAG	3 cut(s)	633, 1135, 1371
BstSLI	GKGCMC	1 cut(s)	890
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	3 cut(s)	563, 1121, 1138
BstV2I	GAAGAC	1 cut(s)	1441
BstX2I	RGATCY	2 cut(s)	197, 1525
BstYI	RGATCY	2 cut(s)	197, 1525
Bsu36I	CCTNAGG	1 cut(s)	738
BsuRI	GGCC	6 cut(s)	392, 542, 888, 1191, 1260, 1309
BtgI	CCRYGG	2 cut(s)	376, 1014
BtgZI	GCGATG	2 cut(s)	310, 1269
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	5 cut(s)	201, 598, 787, 1503, 1513
BtsIMutI	CAGTG	1 cut(s)	1063
BveI	ACCTGC	2 cut(s)	466, 961
Cac8I	GCNNGC	4 cut(s)	15, 1189, 1252, 1552
CciI	TCATGA	1 cut(s)	96
Cfr10I	RCCGGY	2 cut(s)	117, 392
Cfr13I	GGNCC	4 cut(s)	115, 390, 886, 887
Cfr9I	CCCGGG	1 cut(s)	334
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	2 cut(s)	477, 617
CspAI	ACCGGT	1 cut(s)	117
CviAII	CATG	9 cut(s)	97, 377, 532, 751, 883, 940, 1015, 1184, 1251
CviQI	GTAC	2 cut(s)	477, 617
DdeI	CTNAG	5 cut(s)	81, 504, 738, 803, 810
DpnI	GATC	8 cut(s)	128, 199, 350, 924, 1035, 1182, 1319, 1527
DpnII	GATC	8 cut(s)	126, 197, 348, 922, 1033, 1180, 1317, 1525
DrdI	GACNNNNNNGTC	1 cut(s)	850
DseDI	GACNNNNNNGTC	1 cut(s)	850
EaeI	YGGCCR	2 cut(s)	540, 1189
EciI	GGCGGA	1 cut(s)	28
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	3 cut(s)	42, 376, 1014
Eco147I	AGGCCT	1 cut(s)	1309
Eco24I	GRGCYC	3 cut(s)	8, 234, 890
Eco31I	GGTCTC	2 cut(s)	806, 1413
Eco47I	GGWCC	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	1452
Eco81I	CCTNAGG	1 cut(s)	738
Eco88I	CYCGRG	4 cut(s)	233, 312, 334, 1491
EcoICRI	GAGCTC	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	215
EcoT14I	CCWWGG	3 cut(s)	42, 376, 1014
EcoT22I	ATGCAT	1 cut(s)	1252
EcoT38I	GRGCYC	3 cut(s)	8, 234, 890
ErhI	CCWWGG	3 cut(s)	42, 376, 1014
Esp3I	CGTCTC	2 cut(s)	140, 309
FaeI	CATG	9 cut(s)	100, 380, 535, 754, 886, 943, 1018, 1187, 1254
FalI	AAGNNNNNCTT	1 cut(s)	34
FaqI	GGGAC	1 cut(s)	794
FatI	CATG	9 cut(s)	96, 376, 531, 750, 882, 939, 1014, 1183, 1250
FauI	CCCGC	1 cut(s)	268
FauNDI	CATATG	2 cut(s)	1143, 1531
FbaI	TGATCA	1 cut(s)	1180
FblI	GTMKAC	1 cut(s)	454
Fnu4HI	GCNGC	5 cut(s)	109, 330, 552, 1127, 1135
FokI	GGATG	5 cut(s)	188, 605, 774, 1510, 1520
FriOI	GRGCYC	3 cut(s)	8, 234, 890
Fsp4HI	GCNGC	5 cut(s)	109, 330, 552, 1127, 1135
FspBI	CTAG	1 cut(s)	1445
GluI	GCNGC	5 cut(s)	109, 330, 552, 1127, 1135
GsaI	CCCAGC	1 cut(s)	688
HaeIII	GGCC	6 cut(s)	392, 542, 888, 1191, 1260, 1309
HapII	CCGG	6 cut(s)	118, 168, 335, 393, 424, 662
HgaI	GACGC	1 cut(s)	326
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	9 cut(s)	100, 380, 535, 754, 886, 943, 1018, 1187, 1254
HincII	GTYRAC	2 cut(s)	455, 501
HindII	GTYRAC	2 cut(s)	455, 501
HpaII	CCGG	6 cut(s)	118, 168, 335, 393, 424, 662
HphI	GGTGA	1 cut(s)	1480
Hpy166II	GTNNAC	3 cut(s)	455, 501, 1488
Hpy188I	TCNGA	5 cut(s)	105, 197, 257, 1300, 1471
Hpy188III	TCNNGA	8 cut(s)	97, 124, 235, 431, 611, 737, 1244, 1287
Hpy8I	GTNNAC	3 cut(s)	455, 501, 1488
Hpy99I	CGWCG	2 cut(s)	143, 154
HpyAV	CCTTC	1 cut(s)	510
HpyCH4III	ACNGT	6 cut(s)	154, 637, 847, 974, 1004, 1351
HpyCH4IV	ACGT	2 cut(s)	141, 382
HpyF10VI	GCNNNNNNNGC	6 cut(s)	229, 303, 326, 548, 1329, 1397
HpyF3I	CTNAG	5 cut(s)	81, 504, 738, 803, 810
HpySE526I	ACGT	2 cut(s)	141, 382
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	9 cut(s)	100, 380, 535, 754, 886, 943, 1018, 1187, 1254
Ksp22I	TGATCA	1 cut(s)	1180
Kzo9I	GATC	8 cut(s)	126, 197, 348, 922, 1033, 1180, 1317, 1525
LmnI	GCTCC	1 cut(s)	105
Lsp1109I	GCAGC	3 cut(s)	563, 1121, 1138
LweI	GCATC	3 cut(s)	1207, 1237, 1453
MaeI	CTAG	1 cut(s)	1445
MaeII	ACGT	2 cut(s)	141, 382
MaeIII	GTNAC	3 cut(s)	299, 991, 1117
MalI	GATC	8 cut(s)	128, 199, 350, 924, 1035, 1182, 1319, 1527
MbiI	CCGCTC	1 cut(s)	108
MboI	GATC	8 cut(s)	126, 197, 348, 922, 1033, 1180, 1317, 1525
MboII	GAAGA	5 cut(s)	127, 547, 919, 1441, 1507
MfeI	CAATTG	2 cut(s)	480, 1591
MflI	RGATCY	2 cut(s)	197, 1525
MhlI	GDGCHC	3 cut(s)	8, 234, 890
MlsI	TGGCCA	1 cut(s)	542
MluCI	AATT	8 cut(s)	191, 271, 480, 832, 1148, 1229, 1457, 1591
MluNI	TGGCCA	1 cut(s)	542
MlyI	GAGTC	7 cut(s)	109, 496, 659, 860, 971, 1096, 1277
MmeI	TCCRAC	3 cut(s)	83, 280, 703
Mox20I	TGGCCA	1 cut(s)	542
Mph1103I	ATGCAT	1 cut(s)	1252
MscI	TGGCCA	1 cut(s)	542
MseI	TTAA	1 cut(s)	671
MslI	CAYNNNNRTG	3 cut(s)	536, 938, 1113
Msp20I	TGGCCA	1 cut(s)	542
MspA1I	CMGCKG	2 cut(s)	297, 684
MspI	CCGG	6 cut(s)	118, 168, 335, 393, 424, 662
MspR9I	CCNGG	6 cut(s)	168, 217, 335, 336, 424, 662
MunI	CAATTG	2 cut(s)	480, 1591
Mva1269I	GAATGC	1 cut(s)	1554
MvaI	CCWGG	1 cut(s)	217
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	6 cut(s)	229, 303, 326, 548, 1329, 1397
NciI	CCSGG	5 cut(s)	168, 335, 336, 424, 662
NcoI	CCATGG	2 cut(s)	376, 1014
NdeI	CATATG	2 cut(s)	1143, 1531
NdeII	GATC	8 cut(s)	126, 197, 348, 922, 1033, 1180, 1317, 1525
NlaIII	CATG	9 cut(s)	100, 380, 535, 754, 886, 943, 1018, 1187, 1254
NlaIV	GGNNCC	6 cut(s)	156, 199, 888, 1432, 1480, 1527
NmuCI	GTSAC	2 cut(s)	991, 1117
NsiI	ATGCAT	1 cut(s)	1252
NspI	RCATGY	1 cut(s)	1254
PaeI	GCATGC	1 cut(s)	1254
PaeR7I	CTCGAG	1 cut(s)	233
PagI	TCATGA	1 cut(s)	96
PceI	AGGCCT	1 cut(s)	1309
PcsI	WCGNNNNNNNCGW	2 cut(s)	135, 155
PctI	GAATGC	1 cut(s)	1554
PfeI	GAWTC	4 cut(s)	427, 485, 607, 1161
PflFI	GACNNNGTC	2 cut(s)	168, 320
PfoI	TCCNGGA	1 cut(s)	660
PinAI	ACCGGT	1 cut(s)	117
PkrI	GCNGC	5 cut(s)	110, 331, 553, 1128, 1136
PleI	GAGTC	7 cut(s)	108, 496, 658, 859, 970, 1095, 1277
PpsI	GAGTC	7 cut(s)	108, 496, 658, 859, 970, 1095, 1277
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	215
PspFI	CCCAGC	1 cut(s)	684
PspGI	CCWGG	1 cut(s)	215
PspN4I	GGNNCC	6 cut(s)	156, 199, 888, 1432, 1480, 1527
PspOMI	GGGCCC	1 cut(s)	886
PspPI	GGNCC	4 cut(s)	115, 390, 886, 887
PstI	CTGCAG	2 cut(s)	1139, 1375
PsuI	RGATCY	2 cut(s)	197, 1525
PsyI	GACNNNGTC	2 cut(s)	168, 320
PvuII	CAGCTG	1 cut(s)	684
RsaI	GTAC	2 cut(s)	478, 618
RsaNI	GTAC	2 cut(s)	477, 617
RseI	CAYNNNNRTG	3 cut(s)	536, 938, 1113
SacI	GAGCTC	1 cut(s)	234
SalI	GTCGAC	1 cut(s)	453
SaqAI	TTAA	1 cut(s)	671
SatI	GCNGC	5 cut(s)	109, 330, 552, 1127, 1135
Sau3AI	GATC	8 cut(s)	126, 197, 348, 922, 1033, 1180, 1317, 1525
Sau96I	GGNCC	4 cut(s)	115, 390, 886, 887
ScaI	AGTACT	1 cut(s)	618
SchI	GAGTC	7 cut(s)	109, 496, 659, 860, 971, 1096, 1277
ScrFI	CCNGG	6 cut(s)	168, 217, 335, 336, 424, 662
SduI	GDGCHC	3 cut(s)	8, 234, 890
SfaNI	GCATC	3 cut(s)	1207, 1237, 1453
SfcI	CTRYAG	3 cut(s)	633, 1135, 1371
Sfr274I	CTCGAG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	115
SlaI	CTCGAG	1 cut(s)	233
SmaI	CCCGGG	1 cut(s)	336
SmiMI	CAYNNNNRTG	3 cut(s)	536, 938, 1113
SmlI	CTYRAG	2 cut(s)	233, 839
SmoI	CTYRAG	2 cut(s)	233, 839
SphI	GCATGC	1 cut(s)	1254
Sse9I	AATT	8 cut(s)	191, 271, 480, 832, 1148, 1229, 1457, 1591
SseBI	AGGCCT	1 cut(s)	1309
SsiI	CCGC	8 cut(s)	39, 47, 108, 261, 295, 330, 1321, 1380
SspI	AATATT	5 cut(s)	31, 448, 626, 763, 1207
SspMI	CTAG	1 cut(s)	1445
SstI	GAGCTC	1 cut(s)	234
StuI	AGGCCT	1 cut(s)	1309
StyD4I	CCNGG	6 cut(s)	166, 215, 333, 334, 422, 660
StyI	CCWWGG	3 cut(s)	42, 376, 1014
TaaI	ACNGT	6 cut(s)	154, 637, 847, 974, 1004, 1351
TaiI	ACGT	2 cut(s)	144, 385
TasI	AATT	8 cut(s)	191, 271, 480, 832, 1148, 1229, 1457, 1591
TatI	WGTACW	1 cut(s)	616
TauI	GCSGC	2 cut(s)	111, 332
TfiI	GAWTC	4 cut(s)	427, 485, 607, 1161
Tru1I	TTAA	1 cut(s)	671
Tru9I	TTAA	1 cut(s)	671
TscAI	CASTG	1 cut(s)	1063
TseFI	GTSAC	2 cut(s)	991, 1117
TseI	GCWGC	3 cut(s)	551, 1126, 1134
Tsp45I	GTSAC	2 cut(s)	991, 1117
TspDTI	ATGAA	5 cut(s)	548, 767, 1033, 1160, 1574
TspGWI	ACGGA	1 cut(s)	280
TspMI	CCCGGG	1 cut(s)	334
TspRI	CASTG	1 cut(s)	1063
Tth111I	GACNNNGTC	2 cut(s)	168, 320
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	2 cut(s)	191, 1457
XceI	RCATGY	1 cut(s)	1254
XhoI	CTCGAG	1 cut(s)	233
XmaI	CCCGGG	1 cut(s)	334
XmiI	GTMKAC	1 cut(s)	454
XspI	CTAG	1 cut(s)	1445
ZrmI	AGTACT	1 cut(s)	618
Zsp2I	ATGCAT	1 cut(s)	1252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.