Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004228

Physical Location & Seq

Genomic Coordinates Forward (+)

21165869 .. 21166183

Gene Structure 315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1181400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAGGGGGCTACCGCATCAGACTTTGGTTAAACTGCTGTCAGTCCCAATGAAACTGCTTCTCTGTATAAATGATGACTATGCATGTTACAACACGGAAAGCGAGCAGGCTGAGAATGCTGGGAAGACAGATCTTGGAATTGCATACCTGAAAAATGTATCAACTGCCTTAGGTGAAAAGACAATGACTCCCATTGCTTTTGCGTTGTTTTTGGAGCACATGGATGCTTCTGATTGGAAGAAGCGCCATGCAGGAATTTCTATGCTAGCAGTGATTGGAAAGGAGTGTAAAGGGGAGATGGTAATAGTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

11.46

Weight (kDa)

6.26

Isoelectric Point (pI)

23.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004228)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00410
malus_domestica	MD04G1004400.v1.1 MD17G1181400.v1.1
prunus_persica	Prupe.1G004100_v2.0.a1
pyrus_communis	pycom04g00450
rosa_chinensis	RchiOBHm_Chr4g0385811
rosa_laevigata	RLG00000010206 RLG00000010212 RLG00000010227 RLG00000010229
rosa_multiflora	Rmu_co8457409.1_g000001 Rmu_sc0004773.1_g000002 Rmu_sc0008728.1_g000012 Rmu_sc0015537.1_g000002 Rmu_sc0029486.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333310
rosa_rugosa	Rorug03G0060400 Rorug03G0300500 Rorug03G0300900 Rorug04G0011200
rosa_samantha	Rh4AG004500 Rh4AG004800 Rh4AG005200 Rh4AG005600 Rh4BG004100 Rh4DG004300 Rh4DG004700 Rh4DG005900 Rh4DG006200 Rh4DG080400
rosa_wichuraiana	Rw4G000410 Rw4G000420 Rw4G000430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	255
Alw21I	GWGCWC	1 cut(s)	219
ApoI	RAATTY	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	185
AsuNHI	GCTAGC	1 cut(s)	265
AxyI	CCTNAGG	1 cut(s)	169
BbsI	GAAGAC	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	219
BccI	CCATC	1 cut(s)	292
BfaI	CTAG	1 cut(s)	266
BfoI	RGCGCY	1 cut(s)	247
BglII	AGATCT	1 cut(s)	130
BmsI	GCATC	2 cut(s)	25, 214
BmtI	GCTAGC	1 cut(s)	269
BpiI	GAAGAC	1 cut(s)	131
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bse21I	CCTNAGG	1 cut(s)	169
Bse3DI	GCAATG	1 cut(s)	192
BseGI	GGATG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	102
BseYI	CCCAGC	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	29
BsmI	GAATGC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	1 cut(s)	14
BspCNI	CTCAG	1 cut(s)	103
BspOI	GCTAGC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	192
BssMI	GATC	1 cut(s)	130
BstC8I	GCNNGC	3 cut(s)	104, 108, 267
BstDEI	CTNAG	2 cut(s)	111, 169
BstF5I	GGATG	1 cut(s)	229
BstH2I	RGCGCY	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNSI	RCATGY	1 cut(s)	87
BstV2I	GAAGAC	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
Bsu36I	CCTNAGG	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	229
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	3 cut(s)	104, 108, 267
CfoI	GCGC	1 cut(s)	246
CviAII	CATG	3 cut(s)	84, 220, 248
CviJI	RGCY	2 cut(s)	10, 110
CviKI_1	RGCY	2 cut(s)	10, 110
DdeI	CTNAG	2 cut(s)	111, 169
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eco81I	CCTNAGG	1 cut(s)	169
EcoT22I	ATGCAT	1 cut(s)	85
FaeI	CATG	3 cut(s)	87, 223, 251
FaiI	YATR	8 cut(s)	68, 81, 85, 145, 221, 249, 263, 313
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	3 cut(s)	83, 219, 247
FokI	GGATG	1 cut(s)	236
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	1 cut(s)	245
GsaI	CCCAGC	1 cut(s)	123
HaeII	RGCGCY	1 cut(s)	247
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	3 cut(s)	87, 223, 251
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HinfI	GANTC	1 cut(s)	187
HphI	GGTGA	1 cut(s)	185
Hpy188I	TCNGA	2 cut(s)	21, 232
HpyCH4V	TGCA	3 cut(s)	83, 143, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	2 cut(s)	111, 169
Hsp92II	CATG	3 cut(s)	87, 223, 251
HspAI	GCGC	1 cut(s)	244
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	4 cut(s)	92, 105, 161, 237
LweI	GCATC	2 cut(s)	25, 214
MaeI	CTAG	1 cut(s)	266
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	2 cut(s)	136, 250
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	2 cut(s)	138, 255
MlyI	GAGTC	1 cut(s)	181
Mph1103I	ATGCAT	1 cut(s)	85
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	1 cut(s)	222
Mva1269I	GAATGC	1 cut(s)	121
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	1 cut(s)	130
NheI	GCTAGC	1 cut(s)	265
NlaIII	CATG	3 cut(s)	87, 223, 251
NsiI	ATGCAT	1 cut(s)	85
NspI	RCATGY	1 cut(s)	87
PctI	GAATGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	30
Sau3AI	GATC	1 cut(s)	130
SchI	GAGTC	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	2 cut(s)	150, 175
SfaNI	GCATC	2 cut(s)	25, 214
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	2 cut(s)	138, 255
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	266
TasI	AATT	2 cut(s)	138, 255
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	276
TspDTI	ATGAA	1 cut(s)	65
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	276
XapI	RAATTY	1 cut(s)	255
XceI	RCATGY	1 cut(s)	87
XspI	CTAG	1 cut(s)	266
Zsp2I	ATGCAT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.