Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8457409.1

Orthogroup ID

OG0004228

Physical Location & Seq

Genomic Coordinates Forward (+)

850 .. 1239

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8457409.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atggcaagggttttcgtgtggccctttcttagggttgaggtcgttgttcagccgcgggttctagtcgtaccacctccaattgtggtagtatctgccttcttggggacctttgttgtggtatcgtctggttttgcgcttgccagccagcggatgcttctagatttgaagttaagaagggccgcaagagaaatctgcaagcagcagagggcagtggaagctgcgaagagagaagtcagtagggagagtcgcgagattgaagctgcagaaagagaagcccggagggaggcgagagaagtggaggccgctcacagggaagttgccagggcgaagagagagactgaggcctcagagagagaagccaagagggagaagaaccgctggtggaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.95

Weight (kDa)

10.74

Isoelectric Point (pI)

59.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004228)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00410
malus_domestica	MD04G1004400.v1.1 MD17G1181400.v1.1
prunus_persica	Prupe.1G004100_v2.0.a1
pyrus_communis	pycom04g00450
rosa_chinensis	RchiOBHm_Chr4g0385811
rosa_laevigata	RLG00000010206 RLG00000010212 RLG00000010227 RLG00000010229
rosa_multiflora	Rmu_co8457409.1_g000001 Rmu_sc0004773.1_g000002 Rmu_sc0008728.1_g000012 Rmu_sc0015537.1_g000002 Rmu_sc0029486.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333310
rosa_rugosa	Rorug03G0060400 Rorug03G0300500 Rorug03G0300900 Rorug04G0011200
rosa_samantha	Rh4AG004500 Rh4AG004800 Rh4AG005200 Rh4AG005600 Rh4BG004100 Rh4DG004300 Rh4DG004700 Rh4DG005900 Rh4DG006200 Rh4DG080400
rosa_wichuraiana	Rw4G000410 Rw4G000420 Rw4G000430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	305
AccII	CGCG	2 cut(s)	55, 249
AciI	CCGC	6 cut(s)	53, 55, 148, 180, 303, 376
AfaI	GTAC	1 cut(s)	69
AfiI	CCNNNNNNNGG	5 cut(s)	30, 102, 147, 283, 309
AgsI	TTSAA	2 cut(s)	166, 257
AjnI	CCWGG	1 cut(s)	320
AluBI	AGCT	2 cut(s)	218, 260
AluI	AGCT	2 cut(s)	218, 260
Alw26I	GTCTC	1 cut(s)	329
AoxI	GGCC	4 cut(s)	20, 177, 300, 342
ApeKI	GCWGC	3 cut(s)	199, 218, 260
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	3 cut(s)	21, 105, 177
AsuC2I	CCSGG	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	105
BbvI	GCAGC	3 cut(s)	205, 211, 247
BciT130I	CCWGG	1 cut(s)	322
BcnI	CCSGG	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	2 cut(s)	62, 158
BfmI	CTRYAG	1 cut(s)	261
BisI	GCNGC	6 cut(s)	53, 180, 200, 219, 261, 303
BlsI	GCNGC	6 cut(s)	54, 181, 201, 220, 262, 304
Bme1390I	CCNGG	2 cut(s)	277, 322
Bme18I	GGWCC	1 cut(s)	105
BmgT120I	GGNCC	3 cut(s)	21, 105, 177
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	2 cut(s)	277, 322
BmsI	GCATC	1 cut(s)	141
BpuMI	CCSGG	1 cut(s)	277
BsaJI	CCNNGG	2 cut(s)	53, 321
Bsc4I	CCNNNNNNNGG	5 cut(s)	30, 102, 147, 283, 309
BseBI	CCWGG	1 cut(s)	322
BseDI	CCNNGG	2 cut(s)	53, 321
BseGI	GGATG	1 cut(s)	156
BseLI	CCNNNNNNNGG	5 cut(s)	30, 102, 147, 283, 309
BseMII	CTCAG	2 cut(s)	330, 360
BseXI	GCAGC	3 cut(s)	205, 211, 247
Bsh1236I	CGCG	2 cut(s)	55, 249
BshFI	GGCC	4 cut(s)	22, 179, 302, 344
BsiSI	CCGG	1 cut(s)	277
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	5 cut(s)	30, 102, 147, 283, 309
BsmAI	GTCTC	1 cut(s)	329
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	4 cut(s)	22, 179, 302, 344
Bsp68I	TCGCGA	1 cut(s)	249
BspACI	CCGC	6 cut(s)	53, 55, 148, 180, 303, 376
BspANI	GGCC	4 cut(s)	22, 179, 302, 344
BspCNI	CTCAG	2 cut(s)	331, 359
BspFNI	CGCG	2 cut(s)	55, 249
BspLI	GGNNCC	1 cut(s)	106
BspMAI	CTGCAG	1 cut(s)	265
BsrBI	CCGCTC	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	53, 321
Bst2UI	CCWGG	1 cut(s)	322
Bst6I	CTCTTC	2 cut(s)	218, 323
BstC8I	GCNNGC	4 cut(s)	138, 142, 146, 197
BstDEI	CTNAG	3 cut(s)	29, 339, 346
BstDSI	CCRYGG	1 cut(s)	53
BstENI	CCTNNNNNAGG	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	156
BstFNI	CGCG	2 cut(s)	55, 249
BstHHI	GCGC	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	329
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	1 cut(s)	322
BstSCI	CCNGG	2 cut(s)	275, 320
BstSFI	CTRYAG	1 cut(s)	261
BstUI	CGCG	2 cut(s)	55, 249
BstV1I	GCAGC	3 cut(s)	205, 211, 247
BsuRI	GGCC	4 cut(s)	22, 179, 302, 344
BtgI	CCRYGG	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	156
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	216
BtuMI	TCGCGA	1 cut(s)	249
Cac8I	GCNNGC	4 cut(s)	138, 142, 146, 197
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	3 cut(s)	21, 105, 177
Cfr42I	CCGCGG	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	68
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	3 cut(s)	29, 339, 346
Eam1104I	CTCTTC	2 cut(s)	218, 323
EarI	CTCTTC	2 cut(s)	218, 323
Eco147I	AGGCCT	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	105
EcoNI	CCTNNNNNAGG	1 cut(s)	28
EcoO109I	RGGNCCY	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	320
FaqI	GGGAC	1 cut(s)	118
FauI	CCCGC	1 cut(s)	48
Fnu4HI	GCNGC	6 cut(s)	53, 180, 200, 219, 261, 303
FokI	GGATG	1 cut(s)	163
Fsp4HI	GCNGC	6 cut(s)	53, 180, 200, 219, 261, 303
FspBI	CTAG	2 cut(s)	62, 158
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	6 cut(s)	53, 180, 200, 219, 261, 303
HaeIII	GGCC	4 cut(s)	22, 179, 302, 344
HapII	CCGG	1 cut(s)	277
HhaI	GCGC	1 cut(s)	136
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	277
Hpy188I	TCNGA	1 cut(s)	349
Hpy188III	TCNNGA	2 cut(s)	158, 248
HpyAV	CCTTC	2 cut(s)	106, 168
HpyCH4V	TGCA	2 cut(s)	195, 263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	3 cut(s)	29, 339, 346
HspAI	GCGC	1 cut(s)	134
KspI	CCGCGG	1 cut(s)	56
LpnPI	CCDG	8 cut(s)	111, 154, 158, 290, 295, 307, 334, 364
Lsp1109I	GCAGC	3 cut(s)	205, 211, 247
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	2 cut(s)	62, 158
MbiI	CCGCTC	1 cut(s)	305
MboII	GAAGA	3 cut(s)	235, 340, 382
MfeI	CAATTG	1 cut(s)	78
MluCI	AATT	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	253
MnlI	CCTC	9 cut(s)	31, 84, 198, 273, 277, 292, 334, 355, 357
MseI	TTAA	1 cut(s)	170
MspA1I	CMGCKG	3 cut(s)	55, 148, 378
MspI	CCGG	1 cut(s)	277
MspR9I	CCNGG	2 cut(s)	277, 322
MunI	CAATTG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	322
MvnI	CGCG	2 cut(s)	55, 249
MwoI	GCNNNNNNNGC	1 cut(s)	215
NciI	CCSGG	1 cut(s)	277
NlaIV	GGNNCC	1 cut(s)	106
NruI	TCGCGA	1 cut(s)	249
PceI	AGGCCT	1 cut(s)	344
PkrI	GCNGC	6 cut(s)	54, 181, 201, 220, 262, 304
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
PpuMI	RGGWCCY	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	320
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	3 cut(s)	21, 105, 177
PspPPI	RGGWCCY	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	265
RruI	TCGCGA	1 cut(s)	249
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
SacII	CCGCGG	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	6 cut(s)	53, 180, 200, 219, 261, 303
Sau96I	GGNCC	3 cut(s)	21, 105, 177
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	2 cut(s)	277, 322
SetI	ASST	5 cut(s)	42, 76, 110, 220, 262
SfaNI	GCATC	1 cut(s)	141
SfcI	CTRYAG	1 cut(s)	261
Sfr303I	CCGCGG	1 cut(s)	56
SgrBI	CCGCGG	1 cut(s)	56
SinI	GGWCC	1 cut(s)	105
Sse9I	AATT	1 cut(s)	78
SseBI	AGGCCT	1 cut(s)	344
SsiI	CCGC	6 cut(s)	53, 55, 148, 180, 303, 376
SspMI	CTAG	2 cut(s)	62, 158
StuI	AGGCCT	1 cut(s)	344
StyD4I	CCNGG	2 cut(s)	275, 320
TasI	AATT	1 cut(s)	78
TauI	GCSGC	3 cut(s)	55, 182, 305
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TscAI	CASTG	1 cut(s)	216
TseI	GCWGC	3 cut(s)	199, 218, 260
TspRI	CASTG	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	105
XagI	CCTNNNNNAGG	1 cut(s)	28
XbaI	TCTAGA	1 cut(s)	157
XspI	CTAG	2 cut(s)	62, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.