Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004228

Physical Location & Seq

Genomic Coordinates Reverse (-)

649002 .. 691290

Gene Structure 42289 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG004300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTTACTGTATTTGGTGCTGTGGTTAGTTTGATAGGTTTGTTTACGAGTTCAAAGGGGCGGAACTGGTTTAATGACCTTTTGAGAGCAATGATGGTGGGACTGTTTAACTTGTTGAGTCACTTGAAAGAAGAATATGCTCGTGGGGCTGTCAATGAGTTAATAATGCTGGTCATGGATGAGCCACAAATCTTGAAGCCTTACCTTAACCATCTAGTACTCGACATGCTTAATGTGCTAGAGTGTAAAAAAGTGACAGATGAAACGAAACTGTTTGTTGACAAGTTCTTGCTCGCAATGGCAGAAGCCACGGATTTGGCACCTATGATGAGAGAGCTACCTCATGAAACAATGGTTATGAGGAAAGACTGTTTGGACCAAGTTACTGCCATTATTTTGAAGTCATTCAAAGATCCTCATCCTCGAGTTTGTTGGGCAGCTTTTAATTTTATGCAACAGCCTACAAATCTGGTCCAGGCAATGCAAATTCTCTATCATTTGAAGATTGTCCATGCACTGGATGCTGCACTTGACCAACACAGGAACCCAACAGTCAATGAACAAGTTGTCTCAGCTTTACAATACTTGTTAAAGAATGTTCCTTCAGATAGCTTAAGAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

23.62

Weight (kDa)

6.37

Isoelectric Point (pI)

20.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004228)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00410
malus_domestica	MD04G1004400.v1.1 MD17G1181400.v1.1
prunus_persica	Prupe.1G004100_v2.0.a1
pyrus_communis	pycom04g00450
rosa_chinensis	RchiOBHm_Chr4g0385811
rosa_laevigata	RLG00000010206 RLG00000010212 RLG00000010227 RLG00000010229
rosa_multiflora	Rmu_co8457409.1_g000001 Rmu_sc0004773.1_g000002 Rmu_sc0008728.1_g000012 Rmu_sc0015537.1_g000002 Rmu_sc0029486.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333310
rosa_rugosa	Rorug03G0060400 Rorug03G0300500 Rorug03G0300900 Rorug04G0011200
rosa_samantha	Rh4AG004500 Rh4AG004800 Rh4AG005200 Rh4AG005600 Rh4BG004100 Rh4DG004300 Rh4DG004700 Rh4DG005900 Rh4DG006200 Rh4DG080400
rosa_wichuraiana	Rw4G000410 Rw4G000420 Rw4G000430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	319
AccB7I	CCANNNNNTGG	1 cut(s)	517
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	1 cut(s)	407
AcsI	RAATTY	1 cut(s)	486
AcuI	CTGAAG	1 cut(s)	588
AfaI	GTAC	1 cut(s)	219
AfiI	CCNNNNNNNGG	1 cut(s)	517
AflII	CTTAAG	1 cut(s)	613
AgsI	TTSAA	6 cut(s)	54, 127, 196, 400, 409, 502
AjnI	CCWGG	1 cut(s)	474
AjuI	GAANNNNNNNTTGG	2 cut(s)	356, 388
AluBI	AGCT	4 cut(s)	337, 440, 575, 612
AluI	AGCT	4 cut(s)	337, 440, 575, 612
Alw26I	GTCTC	1 cut(s)	574
AlwI	GGATC	1 cut(s)	407
Ama87I	CYCGRG	1 cut(s)	423
ApeKI	GCWGC	2 cut(s)	437, 524
ApoI	RAATTY	1 cut(s)	486
Asp700I	GAANNNNTTC	1 cut(s)	404
AspS9I	GGNCC	2 cut(s)	376, 472
AvaI	CYCGRG	1 cut(s)	423
AvaII	GGWCC	2 cut(s)	376, 472
BanI	GGYRCC	1 cut(s)	319
BauI	CACGAG	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	449, 511
BccI	CCATC	2 cut(s)	88, 219
BciT130I	CCWGG	1 cut(s)	476
BcoDI	GTCTC	1 cut(s)	574
BfaI	CTAG	2 cut(s)	215, 239
BfrI	CTTAAG	1 cut(s)	613
BisI	GCNGC	2 cut(s)	438, 525
BlsI	GCNGC	2 cut(s)	439, 526
BmcAI	AGTACT	1 cut(s)	219
Bme1390I	CCNGG	1 cut(s)	476
Bme18I	GGWCC	2 cut(s)	376, 472
BmeT110I	CYCGRG	1 cut(s)	423
BmgT120I	GGNCC	2 cut(s)	376, 472
BmiI	GGNNCC	2 cut(s)	321, 545
BmrFI	CCNGG	1 cut(s)	476
BmsI	GCATC	1 cut(s)	511
BsaBI	GATNNNNATC	1 cut(s)	417
BsaJI	CCNNGG	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	1 cut(s)	517
Bse1I	ACTGG	2 cut(s)	71, 522
Bse3DI	GCAATG	3 cut(s)	96, 303, 486
Bse8I	GATNNNNATC	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	476
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	3 cut(s)	184, 418, 526
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	1 cut(s)	517
BseMI	GCAATG	3 cut(s)	96, 303, 486
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	2 cut(s)	71, 522
BseXI	GCAGC	2 cut(s)	449, 511
BsgI	GTGCAG	1 cut(s)	510
BshNI	GGYRCC	1 cut(s)	319
BsiHKCI	CYCGRG	1 cut(s)	423
BslFI	GGGAC	1 cut(s)	114
BslI	CCNNNNNNNGG	1 cut(s)	517
BsmAI	GTCTC	1 cut(s)	574
BsmFI	GGGAC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	423
Bsp143I	GATC	1 cut(s)	412
BspACI	CCGC	1 cut(s)	61
BspCNI	CTCAG	1 cut(s)	584
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	2 cut(s)	321, 545
BspPI	GGATC	1 cut(s)	407
BspT107I	GGYRCC	1 cut(s)	319
BspTI	CTTAAG	1 cut(s)	613
BsrDI	GCAATG	3 cut(s)	96, 303, 486
BsrI	ACTGG	2 cut(s)	71, 522
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	1 cut(s)	412
BssSI	CACGAG	1 cut(s)	141
Bst2BI	CACGAG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	476
Bst4CI	ACNGT	5 cut(s)	10, 105, 273, 371, 553
BstAFI	CTTAAG	1 cut(s)	613
BstAPI	GCANNNNNTGC	1 cut(s)	521
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	571
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	3 cut(s)	184, 418, 526
BstKTI	GATC	1 cut(s)	415
BstMAI	GTCTC	1 cut(s)	574
BstMBI	GATC	1 cut(s)	412
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 235, 521
BstNI	CCWGG	1 cut(s)	476
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	474
BstV1I	GCAGC	2 cut(s)	449, 511
BstX2I	RGATCY	1 cut(s)	412
BstXI	CCANNNNNNTGG	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	412
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	3 cut(s)	184, 418, 526
BtsIMutI	CAGTG	1 cut(s)	515
Cac8I	GCNNGC	1 cut(s)	294
CciI	TCATGA	1 cut(s)	343
Cfr13I	GGNCC	2 cut(s)	376, 472
Csp6I	GTAC	1 cut(s)	218
CspCI	CAANNNNNGTGG	4 cut(s)	78, 113, 174, 209
CviAII	CATG	4 cut(s)	175, 226, 344, 512
CviJI	RGCY	9 cut(s)	149, 184, 199, 308, 337, 440, 460, 575, 612
CviKI_1	RGCY	9 cut(s)	149, 184, 199, 308, 337, 440, 460, 575, 612
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	1 cut(s)	571
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
EciI	GGCGGA	1 cut(s)	76
Eco47I	GGWCC	2 cut(s)	376, 472
Eco57I	CTGAAG	1 cut(s)	588
Eco88I	CYCGRG	1 cut(s)	423
EcoRII	CCWGG	1 cut(s)	474
FaeI	CATG	4 cut(s)	178, 229, 347, 515
FaiI	YATR	9 cut(s)	138, 176, 227, 326, 345, 359, 452, 513, 622
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	4 cut(s)	174, 225, 343, 511
Fnu4HI	GCNGC	2 cut(s)	438, 525
FokI	GGATG	3 cut(s)	191, 405, 533
Fsp4HI	GCNGC	2 cut(s)	438, 525
FspBI	CTAG	2 cut(s)	215, 239
GluI	GCNGC	2 cut(s)	438, 525
Hin1II	CATG	4 cut(s)	178, 229, 347, 515
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	45, 280
Hpy188I	TCNGA	1 cut(s)	607
Hpy188III	TCNNGA	2 cut(s)	193, 344
Hpy8I	GTNNAC	2 cut(s)	45, 280
HpyAV	CCTTC	1 cut(s)	612
HpyCH4III	ACNGT	5 cut(s)	10, 105, 273, 371, 553
HpyCH4V	TGCA	4 cut(s)	454, 484, 515, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 235, 521
HpyF3I	CTNAG	1 cut(s)	571
Hsp92II	CATG	4 cut(s)	178, 229, 347, 515
Kzo9I	GATC	1 cut(s)	412
LpnPI	CCDG	7 cut(s)	52, 155, 455, 461, 488, 503, 526
Lsp1109I	GCAGC	2 cut(s)	449, 511
LweI	GCATC	1 cut(s)	511
MaeI	CTAG	2 cut(s)	215, 239
MaeIII	GTNAC	4 cut(s)	4, 119, 253, 382
MalI	GATC	1 cut(s)	414
MboI	GATC	1 cut(s)	412
MboII	GAAGA	2 cut(s)	143, 514
MflI	RGATCY	1 cut(s)	412
MluCI	AATT	2 cut(s)	445, 486
MlyI	GAGTC	1 cut(s)	127
MnlI	CCTC	4 cut(s)	351, 354, 426, 432
MroXI	GAANNNNTTC	1 cut(s)	404
MseI	TTAA	8 cut(s)	72, 108, 161, 207, 231, 444, 590, 614
MspCI	CTTAAG	1 cut(s)	613
MspR9I	CCNGG	1 cut(s)	476
MvaI	CCWGG	1 cut(s)	476
MwoI	GCNNNNNNNGC	3 cut(s)	146, 235, 521
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	4 cut(s)	178, 229, 347, 515
NlaIV	GGNNCC	2 cut(s)	321, 545
NmuCI	GTSAC	2 cut(s)	119, 253
NspI	RCATGY	1 cut(s)	229
PaeR7I	CTCGAG	1 cut(s)	423
PagI	TCATGA	1 cut(s)	343
PdmI	GAANNNNTTC	1 cut(s)	404
PflMI	CCANNNNNTGG	1 cut(s)	517
PkrI	GCNGC	2 cut(s)	439, 526
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	474
PspGI	CCWGG	1 cut(s)	474
PspN4I	GGNNCC	2 cut(s)	321, 545
PspPI	GGNCC	2 cut(s)	376, 472
PspXI	VCTCGAGB	1 cut(s)	423
PsuI	RGATCY	1 cut(s)	412
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
SaqAI	TTAA	8 cut(s)	72, 108, 161, 207, 231, 444, 590, 614
SatI	GCNGC	2 cut(s)	438, 525
Sau3AI	GATC	1 cut(s)	412
Sau96I	GGNCC	2 cut(s)	376, 472
ScaI	AGTACT	1 cut(s)	219
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	476
SetI	ASST	9 cut(s)	40, 81, 207, 325, 339, 343, 442, 577, 614
SfaNI	GCATC	1 cut(s)	511
Sfr274I	CTCGAG	1 cut(s)	423
SinI	GGWCC	2 cut(s)	376, 472
SlaI	CTCGAG	1 cut(s)	423
SmlI	CTYRAG	2 cut(s)	423, 613
SmoI	CTYRAG	2 cut(s)	423, 613
Sse9I	AATT	2 cut(s)	445, 486
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	2 cut(s)	215, 239
StyD4I	CCNGG	1 cut(s)	474
TaaI	ACNGT	5 cut(s)	10, 105, 273, 371, 553
TaqI	TCGA	2 cut(s)	222, 424
TasI	AATT	2 cut(s)	445, 486
TatI	WGTACW	1 cut(s)	217
Tru1I	TTAA	8 cut(s)	72, 108, 161, 207, 231, 444, 590, 614
Tru9I	TTAA	8 cut(s)	72, 108, 161, 207, 231, 444, 590, 614
TscAI	CASTG	1 cut(s)	522
TseFI	GTSAC	2 cut(s)	119, 253
TseI	GCWGC	2 cut(s)	437, 524
Tsp45I	GTSAC	2 cut(s)	119, 253
TspDTI	ATGAA	3 cut(s)	276, 360, 573
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	522
Van91I	CCANNNNNTGG	1 cut(s)	517
Vha464I	CTTAAG	1 cut(s)	613
VpaK11BI	GGWCC	2 cut(s)	376, 472
XapI	RAATTY	1 cut(s)	486
XceI	RCATGY	1 cut(s)	229
XhoI	CTCGAG	1 cut(s)	423
XmnI	GAANNNNTTC	1 cut(s)	404
XspI	CTAG	2 cut(s)	215, 239
ZrmI	AGTACT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.