Rh4AG004500

ribosomal protein import into nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0004228
Physical Location & Seq
Reverse (-)
687884 .. 698121
10238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG004500.1

Sequence Viewer

Length: 1617 bp
ATGCGTACTTTGAGACTACTTTGTGGCATTGTCTCTGAAATGGGCTCTGAGATTTCCAAGGCTGGTCATGAGTGGCCAGAGCTCATGGATTTTTTGTTGAACTCTATTCAATCGGATTATGAAAAGTTGCAACAATGTGCATTATGGGTGTTGGCTTATTTGCCAAAAGGGTTCCGTCCGGTTGTTTGTGAAGCTTTGGTTCCTAGCCTTGAACCTTTACACTCGGCAATATTACAAGCCTTGAGTTCCTCCAATGCTGATATTCAGGTTACTGCATTTGGTGCTGTGGTTAGTTTGATAGGTTTGTTTACGAGTTCAAAGGGGCGGAACTGGTTTAATGACCTTTTGAGAGCAATGATGGTGGGACTGTTTAACTTGTTGAGTCACTTGAAAGAAGAATATGCTCGTGGGGCTGTCAATGAGTTAATAATGCTGGTCATGGATGAGCCACAAATCTTGAAGCCTTACCTTAACCATCTAGTACTCGACATGCTTAATGTGCTAGAGTGTAAAAAAGTGACAGATGAAACGAAACTGTTTGTTGACAAGTTCTTGCTCGCAATGGCAGAAGCCACGGATTTGGCACCTATGATGAGAGAGCTACCTCATGAAACAATGGTTAGGCTGCTCACGACCTCAATGCAACTGCTTCTCTCTATAAAGGATGACAATGCATGGTACAACACGGAAAGCGAGCAGGGTGACAATGATGGAAAGATGGATGTATACAAATCTGGAATTTTGTTCCTGAGAAAACTTTCAACGGCCTTAGGTGAAAAAAGAATACTTCCTATATGTTTTGAATTGTTCTTGGGGCACATGGAGGCTACCGAGTGGAAGAAACGTCATGCAGGGATTTCTTTGCTAGCAGTGATTGCCGAGGAGTGCTCAGATGAAATGGTTATGAGGAAAGACTGTTTGGACCAAGTTACTGCCATTATTTTGAAGTCATTCAAAGATCCTCATCCTCGAGTTTGTTGGGCAGCTTTTAATTTTATGCAACAGCCTACAAATCTGGTCCAGGCAATGCAAATTCTCTATCATTTGAAGATTGTCCATGCACTGGATGCTGCACTTGACCAACACAGGAACCCAACAGTCAAGGAACAAGTTGTCTCAGCTTTACAATACTTGTTAAAGAATGTTCCTTCAGATAGCTTAAGAATATATGCACACAGACTTGGATACTATATTGTGGAATTTGCAGAAAGAACCACAGGAACTGCTTTCCTCGACGCTGTTCGTGCCGCTTCGCTTGTACCCGAAAATGGAACTCCACCTACCTATAAATGGTTTGAGTCGATCTTCGCCATCTTGAGGATTGGGAAATCTCTGGAGCTGACTATGGCAAGTTTTAAGCTTTTGAATGAGTTGGATAAGCGTTTCCCTCGGGTGCATTTGTCTGTTGTTGATGAAATGAAATCGACCGGTAAAGTCATTGAAGTTGAGGCTTGGTCGCCATTTGTTTTCAGCTCCGAAAGTACTAGTAGCGAGAGGGAAGCTGCTAATAACTTGGGGGGATCAGTTGACTCCTCTGGTTTCCAACATTTGATAGAAGACCTTGCTGATGCAACTGCTGAACCAAACTTCCAAGCCTCAGAAACAAAGGTTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

538

Amino Acids

60.47

Weight (kDa)

5.42

Isoelectric Point (pI)

31.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_IPO5 PF25780 6 - 161 5.1e-14 IPO5-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 583
AccB7I CCANNNNNTGG 1 cut(s) 1063
AccI GTMKAC 1 cut(s) 726
AciI CCGC 2 cut(s) 325, 1248
AclWI GGATC 2 cut(s) 953, 1528
AcoI YGGCCR 1 cut(s) 74
AcsI RAATTY 3 cut(s) 738, 1032, 1199
AcuI CTGAAG 1 cut(s) 1134
AfaI GTAC 5 cut(s) 7, 483, 680, 1260, 1483
AfiI CCNNNNNNNGG 4 cut(s) 1063, 1268, 1290, 1317
AflII CTTAAG 1 cut(s) 1159
AgeI ACCGGT 1 cut(s) 1427
AhlI ACTAGT 1 cut(s) 1484
AjnI CCWGG 1 cut(s) 1020
AjuI GAANNNNNNNTTGG 2 cut(s) 902, 934
AloI GAACNNNNNNTCC 2 cut(s) 1572, 1604
Alw21I GWGCWC 2 cut(s) 84, 890
Alw26I GTCTC 3 cut(s) 7, 37, 1120
AlwI GGATC 2 cut(s) 953, 1528
AlwNI CAGNNNCTG 1 cut(s) 1223
Ama87I CYCGRG 2 cut(s) 969, 1389
AoxI GGCC 2 cut(s) 74, 765
ApeKI GCWGC 4 cut(s) 625, 983, 1070, 1502
ApoI RAATTY 3 cut(s) 738, 1032, 1199
AsiGI ACCGGT 1 cut(s) 1427
Asp700I GAANNNNTTC 2 cut(s) 757, 950
AspS9I GGNCC 2 cut(s) 922, 1018
AsuHPI GGTGA 2 cut(s) 713, 785
AsuNHI GCTAGC 1 cut(s) 865
AvaI CYCGRG 2 cut(s) 969, 1389
AvaII GGWCC 2 cut(s) 922, 1018
AxyI CCTNAGG 1 cut(s) 769
BaeGI GKGCMC 1 cut(s) 819
BalI TGGCCA 1 cut(s) 76
BanI GGYRCC 1 cut(s) 583
BanII GRGCYC 2 cut(s) 47, 84
BauI CACGAG 1 cut(s) 405
BbsI GAAGAC 1 cut(s) 1563
Bbv12I GWGCWC 2 cut(s) 84, 890
BbvI GCAGC 4 cut(s) 612, 995, 1057, 1489
BccI CCATC 5 cut(s) 352, 483, 704, 712, 1319
BceAI ACGGC 1 cut(s) 780
BcgI CGANNNNNNTGC 2 cut(s) 622, 656
BciT130I CCWGG 1 cut(s) 1022
BciVI GTATCC 1 cut(s) 1178
BcoDI GTCTC 3 cut(s) 7, 37, 1120
BcuI ACTAGT 1 cut(s) 1484
BfaI CTAG 5 cut(s) 204, 479, 503, 866, 1485
BfrI CTTAAG 1 cut(s) 1159
BfuI GTATCC 1 cut(s) 1178
BisI GCNGC 5 cut(s) 626, 984, 1071, 1248, 1503
BlsI GCNGC 5 cut(s) 627, 985, 1072, 1249, 1504
BmcAI AGTACT 2 cut(s) 483, 1483
Bme1390I CCNGG 1 cut(s) 1022
Bme18I GGWCC 2 cut(s) 922, 1018
BmeT110I CYCGRG 2 cut(s) 969, 1389
BmgT120I GGNCC 2 cut(s) 922, 1018
BmiI GGNNCC 4 cut(s) 173, 201, 585, 1091
BmrFI CCNGG 1 cut(s) 1022
BmsI GCATC 2 cut(s) 1057, 1558
BmtI GCTAGC 1 cut(s) 869
BpiI GAAGAC 1 cut(s) 1563
BplI GAGNNNNNCTC 2 cut(s) 872, 904
BpmI CTGGAG 1 cut(s) 1355
BpuEI CTTGAG 2 cut(s) 262, 1336
BsaBI GATNNNNATC 1 cut(s) 963
BsaJI CCNNGG 4 cut(s) 57, 573, 879, 1388
BsaWI WCCGGW 2 cut(s) 178, 1427
Bsc4I CCNNNNNNNGG 4 cut(s) 1063, 1268, 1290, 1317
Bse118I RCCGGY 1 cut(s) 1427
Bse1I ACTGG 2 cut(s) 335, 1068
Bse21I CCTNAGG 1 cut(s) 769
Bse3DI GCAATG 3 cut(s) 360, 567, 1032
Bse8I GATNNNNATC 1 cut(s) 963
BseBI CCWGG 1 cut(s) 1022
BseDI CCNNGG 4 cut(s) 57, 573, 879, 1388
BseGI GGATG 5 cut(s) 448, 670, 727, 964, 1072
BseJI GATNNNNATC 1 cut(s) 963
BseLI CCNNNNNNNGG 4 cut(s) 1063, 1268, 1290, 1317
BseMI GCAATG 3 cut(s) 360, 567, 1032
BseMII CTCAG 5 cut(s) 39, 740, 903, 1131, 1611
BseNI ACTGG 2 cut(s) 335, 1068
BseRI GAGGAG 2 cut(s) 896, 1522
BseSI GKGCMC 1 cut(s) 819
BseXI GCAGC 4 cut(s) 612, 995, 1057, 1489
BsgI GTGCAG 1 cut(s) 1056
Bsh1285I CGRYCG 1 cut(s) 1428
BshFI GGCC 2 cut(s) 76, 767
BshNI GGYRCC 1 cut(s) 583
BshTI ACCGGT 1 cut(s) 1427
BsiEI CGRYCG 1 cut(s) 1428
BsiHKAI GWGCWC 2 cut(s) 84, 890
BsiHKCI CYCGRG 2 cut(s) 969, 1389
BsiSI CCGG 2 cut(s) 179, 1428
BslFI GGGAC 1 cut(s) 378
BslI CCNNNNNNNGG 4 cut(s) 1063, 1268, 1290, 1317
BsmAI GTCTC 3 cut(s) 7, 37, 1120
BsmFI GGGAC 1 cut(s) 378
BsnI GGCC 2 cut(s) 76, 767
BsoBI CYCGRG 2 cut(s) 969, 1389
Bsp1286I GDGCHC 4 cut(s) 47, 84, 819, 890
Bsp143I GATC 3 cut(s) 958, 1302, 1520
BspACI CCGC 2 cut(s) 325, 1248
BspANI GGCC 2 cut(s) 76, 767
BspCNI CTCAG 5 cut(s) 40, 741, 902, 1130, 1610
BspHI TCATGA 2 cut(s) 67, 607
BspLI GGNNCC 4 cut(s) 173, 201, 585, 1091
BspOI GCTAGC 1 cut(s) 869
BspPI GGATC 2 cut(s) 953, 1528
BspT107I GGYRCC 1 cut(s) 583
BspTI CTTAAG 1 cut(s) 1159
BsrDI GCAATG 3 cut(s) 360, 567, 1032
BsrFI RCCGGY 1 cut(s) 1427
BsrI ACTGG 2 cut(s) 335, 1068
BssAI RCCGGY 1 cut(s) 1427
BssECI CCNNGG 4 cut(s) 57, 573, 879, 1388
BssMI GATC 3 cut(s) 958, 1302, 1520
BssNAI GTATAC 1 cut(s) 727
BssSI CACGAG 1 cut(s) 405
BssT1I CCWWGG 1 cut(s) 57
Bst1107I GTATAC 1 cut(s) 727
Bst2BI CACGAG 1 cut(s) 405
Bst2UI CCWGG 1 cut(s) 1022
Bst4CI ACNGT 4 cut(s) 369, 537, 917, 1099
BstAFI CTTAAG 1 cut(s) 1159
BstAPI GCANNNNNTGC 3 cut(s) 281, 875, 1067
BstC8I GCNNGC 3 cut(s) 558, 695, 867
BstDEI CTNAG 6 cut(s) 48, 749, 769, 889, 1117, 1597
BstDSI CCRYGG 1 cut(s) 573
BstF5I GGATG 5 cut(s) 448, 670, 727, 964, 1072
BstKTI GATC 3 cut(s) 961, 1305, 1523
BstMAI GTCTC 3 cut(s) 7, 37, 1120
BstMBI GATC 3 cut(s) 958, 1302, 1520
BstMCI CGRYCG 1 cut(s) 1428
BstMWI GCNNNNNNNGC 6 cut(s) 281, 410, 499, 875, 1067, 1244
BstNI CCWGG 1 cut(s) 1022
BstNSI RCATGY 1 cut(s) 493
BstSCI CCNGG 1 cut(s) 1020
BstSLI GKGCMC 1 cut(s) 819
BstV1I GCAGC 4 cut(s) 612, 995, 1057, 1489
BstV2I GAAGAC 1 cut(s) 1563
BstX2I RGATCY 1 cut(s) 958
BstXI CCANNNNNNTGG 1 cut(s) 580
BstYI RGATCY 1 cut(s) 958
BstZ17I GTATAC 1 cut(s) 727
Bsu36I CCTNAGG 1 cut(s) 769
BsuI GTATCC 1 cut(s) 1178
BsuRI GGCC 2 cut(s) 76, 767
BtgI CCRYGG 1 cut(s) 573
BtsCI GGATG 5 cut(s) 448, 670, 727, 964, 1072
BtsI GCAGTG 1 cut(s) 876
BtsIMutI CAGTG 2 cut(s) 876, 1061
Cac8I GCNNGC 3 cut(s) 558, 695, 867
CaiI CAGNNNCTG 1 cut(s) 1223
CciI TCATGA 2 cut(s) 67, 607
Cfr10I RCCGGY 1 cut(s) 1427
Cfr13I GGNCC 2 cut(s) 922, 1018
CseI GACGC 1 cut(s) 1244
Csp6I GTAC 5 cut(s) 6, 482, 679, 1259, 1482
CspAI ACCGGT 1 cut(s) 1427
CspCI CAANNNNNGTGG 4 cut(s) 342, 377, 438, 473
CviAII CATG 9 cut(s) 68, 85, 439, 490, 608, 675, 820, 848, 1058
CviQI GTAC 5 cut(s) 6, 482, 679, 1259, 1482
DdeI CTNAG 6 cut(s) 48, 749, 769, 889, 1117, 1597
DpnI GATC 3 cut(s) 960, 1304, 1522
DpnII GATC 3 cut(s) 958, 1302, 1520
EaeI YGGCCR 1 cut(s) 74
EciI GGCGGA 1 cut(s) 340
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 57
Eco24I GRGCYC 2 cut(s) 47, 84
Eco47I GGWCC 2 cut(s) 922, 1018
Eco53kI GAGCTC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 1134
Eco81I CCTNAGG 1 cut(s) 769
Eco88I CYCGRG 2 cut(s) 969, 1389
EcoICRI GAGCTC 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 1020
EcoT14I CCWWGG 1 cut(s) 57
EcoT22I ATGCAT 1 cut(s) 676
EcoT38I GRGCYC 2 cut(s) 47, 84
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 9 cut(s) 71, 88, 442, 493, 611, 678, 823, 851, 1061
FaqI GGGAC 1 cut(s) 378
FatI CATG 9 cut(s) 67, 84, 438, 489, 607, 674, 819, 847, 1057
FblI GTMKAC 1 cut(s) 726
Fnu4HI GCNGC 5 cut(s) 626, 984, 1071, 1248, 1503
FokI GGATG 5 cut(s) 455, 677, 734, 951, 1079
FriOI GRGCYC 2 cut(s) 47, 84
Fsp4HI GCNGC 5 cut(s) 626, 984, 1071, 1248, 1503
FspBI CTAG 5 cut(s) 204, 479, 503, 866, 1485
GluI GCNGC 5 cut(s) 626, 984, 1071, 1248, 1503
GsuI CTGGAG 1 cut(s) 1355
HaeIII GGCC 2 cut(s) 76, 767
HapII CCGG 2 cut(s) 179, 1428
HgaI GACGC 1 cut(s) 1244
Hin1II CATG 9 cut(s) 71, 88, 442, 493, 611, 678, 823, 851, 1061
HincII GTYRAC 2 cut(s) 544, 1528
HindII GTYRAC 2 cut(s) 544, 1528
HindIII AAGCTT 2 cut(s) 192, 1358
HinfI GANTC 3 cut(s) 382, 1298, 1529
HpaII CCGG 2 cut(s) 179, 1428
HphI GGTGA 2 cut(s) 713, 785
Hpy166II GTNNAC 4 cut(s) 309, 544, 727, 1528
Hpy188I TCNGA 7 cut(s) 37, 49, 115, 892, 1153, 1477, 1600
Hpy188III TCNNGA 8 cut(s) 68, 457, 608, 631, 735, 748, 1315, 1334
Hpy8I GTNNAC 4 cut(s) 309, 544, 727, 1528
Hpy99I CGWCG 1 cut(s) 1238
HpyAV CCTTC 1 cut(s) 1158
HpyCH4III ACNGT 4 cut(s) 369, 537, 917, 1099
HpyCH4IV ACGT 1 cut(s) 844
HpyF10VI GCNNNNNNNGC 6 cut(s) 281, 410, 499, 875, 1067, 1244
HpyF3I CTNAG 6 cut(s) 48, 749, 769, 889, 1117, 1597
HpySE526I ACGT 1 cut(s) 844
Hsp92II CATG 9 cut(s) 71, 88, 442, 493, 611, 678, 823, 851, 1061
Kzo9I GATC 3 cut(s) 958, 1302, 1520
LmnI GCTCC 2 cut(s) 1336, 1478
Lsp1109I GCAGC 4 cut(s) 612, 995, 1057, 1489
LweI GCATC 2 cut(s) 1057, 1558
MaeI CTAG 5 cut(s) 204, 479, 503, 866, 1485
MaeII ACGT 1 cut(s) 844
MaeIII GTNAC 5 cut(s) 268, 383, 517, 701, 928
MalI GATC 3 cut(s) 960, 1304, 1522
MboI GATC 3 cut(s) 958, 1302, 1520
MboII GAAGA 5 cut(s) 407, 850, 1060, 1297, 1568
MflI RGATCY 1 cut(s) 958
MhlI GDGCHC 4 cut(s) 47, 84, 819, 890
MlsI TGGCCA 1 cut(s) 76
MluCI AATT 5 cut(s) 738, 803, 991, 1032, 1199
MluNI TGGCCA 1 cut(s) 76
MlyI GAGTC 3 cut(s) 391, 1307, 1523
MmeI TCCRAC 2 cut(s) 1353, 1567
Mox20I TGGCCA 1 cut(s) 76
Mph1103I ATGCAT 1 cut(s) 676
MroXI GAANNNNTTC 2 cut(s) 757, 950
MscI TGGCCA 1 cut(s) 76
Msp20I TGGCCA 1 cut(s) 76
MspCI CTTAAG 1 cut(s) 1159
MspI CCGG 2 cut(s) 179, 1428
MspR9I CCNGG 1 cut(s) 1022
MvaI CCWGG 1 cut(s) 1022
MwoI GCNNNNNNNGC 6 cut(s) 281, 410, 499, 875, 1067, 1244
NdeII GATC 3 cut(s) 958, 1302, 1520
NheI GCTAGC 1 cut(s) 865
NlaIII CATG 9 cut(s) 71, 88, 442, 493, 611, 678, 823, 851, 1061
NlaIV GGNNCC 4 cut(s) 173, 201, 585, 1091
NmeAIII GCCGAG 2 cut(s) 203, 904
NmuCI GTSAC 3 cut(s) 383, 517, 701
NsiI ATGCAT 1 cut(s) 676
NspI RCATGY 1 cut(s) 493
PaeR7I CTCGAG 1 cut(s) 969
PagI TCATGA 2 cut(s) 67, 607
PdmI GAANNNNTTC 2 cut(s) 757, 950
PflMI CCANNNNNTGG 1 cut(s) 1063
PinAI ACCGGT 1 cut(s) 1427
PkrI GCNGC 5 cut(s) 627, 985, 1072, 1249, 1504
PleI GAGTC 3 cut(s) 390, 1306, 1523
PpsI GAGTC 3 cut(s) 390, 1306, 1523
Psp124BI GAGCTC 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 1020
PspGI CCWGG 1 cut(s) 1020
PspN4I GGNNCC 4 cut(s) 173, 201, 585, 1091
PspPI GGNCC 2 cut(s) 922, 1018
PspXI VCTCGAGB 1 cut(s) 969
PsrI GAACNNNNNNTAC 2 cut(s) 1264, 1296
PstNI CAGNNNCTG 1 cut(s) 1223
PsuI RGATCY 1 cut(s) 958
RsaI GTAC 5 cut(s) 7, 483, 680, 1260, 1483
RsaNI GTAC 5 cut(s) 6, 482, 679, 1259, 1482
SacI GAGCTC 1 cut(s) 84
SatI GCNGC 5 cut(s) 626, 984, 1071, 1248, 1503
Sau3AI GATC 3 cut(s) 958, 1302, 1520
Sau96I GGNCC 2 cut(s) 922, 1018
ScaI AGTACT 2 cut(s) 483, 1483
SchI GAGTC 3 cut(s) 391, 1307, 1523
ScrFI CCNGG 1 cut(s) 1022
SduI GDGCHC 4 cut(s) 47, 84, 819, 890
SfaNI GCATC 2 cut(s) 1057, 1558
Sfr274I CTCGAG 1 cut(s) 969
SinI GGWCC 2 cut(s) 922, 1018
SlaI CTCGAG 1 cut(s) 969
SmlI CTYRAG 4 cut(s) 241, 969, 1159, 1315
SmoI CTYRAG 4 cut(s) 241, 969, 1159, 1315
SpeI ACTAGT 1 cut(s) 1484
Sse9I AATT 5 cut(s) 738, 803, 991, 1032, 1199
SsiI CCGC 2 cut(s) 325, 1248
SspI AATATT 1 cut(s) 231
SspMI CTAG 5 cut(s) 204, 479, 503, 866, 1485
SstI GAGCTC 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 1020
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 4 cut(s) 369, 537, 917, 1099
TaiI ACGT 1 cut(s) 847
TaqI TCGA 5 cut(s) 486, 970, 1233, 1301, 1424
TasI AATT 5 cut(s) 738, 803, 991, 1032, 1199
TatI WGTACW 2 cut(s) 481, 1481
TauI GCSGC 1 cut(s) 1250
TscAI CASTG 2 cut(s) 876, 1068
TseFI GTSAC 3 cut(s) 383, 517, 701
TseI GCWGC 4 cut(s) 625, 983, 1070, 1502
Tsp45I GTSAC 3 cut(s) 383, 517, 701
TspDTI ATGAA 6 cut(s) 135, 540, 624, 909, 1428, 1433
TspGWI ACGGA 3 cut(s) 164, 590, 701
TspRI CASTG 2 cut(s) 876, 1068
Van91I CCANNNNNTGG 1 cut(s) 1063
Vha464I CTTAAG 1 cut(s) 1159
VpaK11BI GGWCC 2 cut(s) 922, 1018
XapI RAATTY 3 cut(s) 738, 1032, 1199
XceI RCATGY 1 cut(s) 493
XhoI CTCGAG 1 cut(s) 969
XmiI GTMKAC 1 cut(s) 726
XmnI GAANNNNTTC 2 cut(s) 757, 950
XspI CTAG 5 cut(s) 204, 479, 503, 866, 1485
ZrmI AGTACT 2 cut(s) 483, 1483
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.