Rw4G000430

ribosomal protein import into nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0004228
Physical Location & Seq
Forward (+)
1033800 .. 1037364
3565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G000430.1

Sequence Viewer

Length: 1521 bp
ATGATGGAGTCGGAGTTTCCTCAGGAATTGCAAACACAAGCCTACGGAATTCTGAGCTCCAACGATGTTGAGCCATTGGAGGCACTCTTTTCTCACGTGTTTGGCTCCCAAGAACCCCAAAGGTCCCAAGCTTACACCTTTTTACATTATTGCAAAAAGCACTTCCCACATTTGCTCTTCATAAAACTCTTTTTTGTTATTAGATGTAGCCCTGTCTCTGACACTAGGTCCAGGTCTGCCCTTGTGCTTCGTTATCTCAAAATCTGTGACCTTTGGCCTACCTTGTCAGTAATTGCTCAAAATTACATGAAATCCCACTTCCTTGTTTGTCTTCAAGAGGAAGTTTCAATGCCCACTTTGAGACTACTTTGTGGCATTGTGTCTGAAATGGGCTCTGAGATTTCCAAGGCTGGCAATGAGTGGCCAGAGCTCATGGAGTTTTTGTTGAATTCTATTCAATCGGATTATGAGAAGTTACAACAATCTGCATTTTGGGTGTTGGCTTATTTGCCAAAAGGGTTCCGTCCGGTTGTTTGTGAAGCTTTAGTTCCTAGCCTTGAACCTTTACACTCGGCAATATTACAAGCGTTGAGTTCCCCCAATGCTGACATTCAGGTTGCTGCATTTGGTGCTGTGGTCAGTTTGATAGGTTTGTTTATGAGTTCAAAGGGGCGGAACTGGTTTAATGACCTTTTGAGAGCAATGATGGTGGGACTGTTTAACTTGTTGAGTCACTTGAAAGAAGAATATGCTCGTGGGGCTGTCAATGAGTTAATAATGCTGCCTTACCTTAACCATCTAGTACTCGACATGCTTAATGTGCTGGAGTGTAAAAAAGTGACAGATGAAACGAAACTGTTTGTTGACAAGTTCTTGCTCGCAATGGCAGAAGCCACGGATTTGGCACCTATGATGAGAGAGCTACCTCATGAAACAATGGTTAGGCTGCTCACGACCTCAATGCAACTGCTTCTCTCTATAAAGGAGGACAATGCATGGTACAACACGGAAAGCGAGCAGGGTGAGAATGATGGAAAGATGGATGTATACAAATCTGGAATTTTGTTCCTGAGAAAACTTTCAACGGCCTTAGGTGAAAAAAGAATACTTCCTATATGTTTTGAATTGTTCTTGGGGCACATGGAGGCTACCGAGTGGAAGAAACGCCATGCAGGGATTTCTTTGCTAGCAGTGATTGCCGAGGAGTGCTCAGATGAAAGGGTTATGAGGAAAGACTGTTTCGACCAAGTTACTGCCATTATTTTGAAGTCATTAAAAGATCCTCATCCTCGAGTTTGTTGGGCAGCTTTTAATTTTATGCAACAGCCTACAAATCTGGTCCAGGCAATGCAAATACTTTATCATTTGAAGATTGTCTATGCACTGGACGCTGCACTTGACCAACACCGGAACCCAACAGTCAAGAGTTGCCATTATAGACCACCGTCCCTAAAAGCCCCAAGCTTTTTGTTTGTTTGTTTGGCCAAAAATGCTTATAGTCTTAGCCTTCATCTACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

506

Amino Acids

57.65

Weight (kDa)

6.29

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_IPO5 PF25780 123 - 250 2.9e-11 IPO5-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 904
AccI GTMKAC 1 cut(s) 1047
AciI CCGC 1 cut(s) 673
AclWI GGATC 1 cut(s) 1274
AcoI YGGCCR 2 cut(s) 422, 1482
AcsI RAATTY 3 cut(s) 48, 448, 1059
AcvI CACGTG 1 cut(s) 97
AfaI GTAC 2 cut(s) 804, 1001
AflIII ACRYGT 1 cut(s) 96
AhdI GACNNNNNGTC 1 cut(s) 226
AjnI CCWGG 2 cut(s) 230, 1341
AluBI AGCT 7 cut(s) 57, 131, 430, 542, 922, 1307, 1464
AluI AGCT 7 cut(s) 57, 131, 430, 542, 922, 1307, 1464
Alw21I GWGCWC 3 cut(s) 59, 432, 1211
Alw26I GTCTC 2 cut(s) 220, 355
AlwI GGATC 1 cut(s) 1274
Ama87I CYCGRG 1 cut(s) 1290
AoxI GGCC 4 cut(s) 275, 422, 1086, 1482
ApeKI GCWGC 5 cut(s) 620, 781, 946, 1304, 1391
ApoI RAATTY 3 cut(s) 48, 448, 1059
Asp700I GAANNNNTTC 1 cut(s) 1078
AspS9I GGNCC 3 cut(s) 123, 228, 1339
AsuHPI GGTGA 2 cut(s) 1034, 1106
AsuNHI GCTAGC 1 cut(s) 1186
AvaI CYCGRG 1 cut(s) 1290
AvaII GGWCC 3 cut(s) 123, 228, 1339
AxyI CCTNAGG 2 cut(s) 21, 1090
BaeGI GKGCMC 1 cut(s) 1140
BalI TGGCCA 2 cut(s) 424, 1484
BanI GGYRCC 1 cut(s) 904
BanII GRGCYC 3 cut(s) 59, 395, 432
BauI CACGAG 1 cut(s) 753
BbrPI CACGTG 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 323
Bbv12I GWGCWC 3 cut(s) 59, 432, 1211
BbvI GCAGC 5 cut(s) 607, 768, 933, 1316, 1378
BccI CCATC 4 cut(s) 700, 804, 1025, 1033
BceAI ACGGC 1 cut(s) 1101
BcgI CGANNNNNNTGC 2 cut(s) 943, 977
BciT130I CCWGG 2 cut(s) 232, 1343
BcoDI GTCTC 2 cut(s) 220, 355
BfaI CTAG 5 cut(s) 225, 552, 800, 1187, 1519
BisI GCNGC 5 cut(s) 621, 782, 947, 1305, 1392
BlsI GCNGC 5 cut(s) 622, 783, 948, 1306, 1393
BmcAI AGTACT 1 cut(s) 804
Bme1390I CCNGG 2 cut(s) 232, 1343
Bme18I GGWCC 3 cut(s) 123, 228, 1339
BmeRI GACNNNNNGTC 1 cut(s) 226
BmeT110I CYCGRG 1 cut(s) 1290
BmgT120I GGNCC 3 cut(s) 123, 228, 1339
BmiI GGNNCC 5 cut(s) 106, 125, 521, 906, 1412
BmrFI CCNGG 2 cut(s) 232, 1343
BmtI GCTAGC 1 cut(s) 1190
BoxI GACNNNNGTC 1 cut(s) 1444
BpiI GAAGAC 1 cut(s) 323
BplI GAGNNNNNCTC 2 cut(s) 1193, 1225
BpmI CTGGAG 1 cut(s) 845
BsaAI YACGTR 1 cut(s) 97
BsaBI GATNNNNATC 1 cut(s) 1284
BsaJI CCNNGG 3 cut(s) 405, 894, 1200
BsaWI WCCGGW 2 cut(s) 526, 1407
BsaXI ACNNNNNCTCC 3 cut(s) 29, 428, 458
Bse1I ACTGG 2 cut(s) 683, 1389
Bse21I CCTNAGG 2 cut(s) 21, 1090
Bse3DI GCAATG 4 cut(s) 421, 708, 888, 1353
Bse8I GATNNNNATC 1 cut(s) 1284
BseBI CCWGG 2 cut(s) 232, 1343
BseDI CCNNGG 3 cut(s) 405, 894, 1200
BseGI GGATG 2 cut(s) 1048, 1285
BseJI GATNNNNATC 1 cut(s) 1284
BseMI GCAATG 4 cut(s) 421, 708, 888, 1353
BseMII CTCAG 5 cut(s) 35, 44, 387, 1061, 1224
BseNI ACTGG 2 cut(s) 683, 1389
BseRI GAGGAG 1 cut(s) 1217
BseSI GKGCMC 1 cut(s) 1140
BseXI GCAGC 5 cut(s) 607, 768, 933, 1316, 1378
BsgI GTGCAG 1 cut(s) 1377
BshFI GGCC 4 cut(s) 277, 424, 1088, 1484
BshNI GGYRCC 1 cut(s) 904
BsiHKAI GWGCWC 3 cut(s) 59, 432, 1211
BsiHKCI CYCGRG 1 cut(s) 1290
BsiSI CCGG 2 cut(s) 527, 1408
BslFI GGGAC 3 cut(s) 109, 726, 1432
BsmAI GTCTC 2 cut(s) 220, 355
BsmFI GGGAC 3 cut(s) 109, 726, 1432
BsnI GGCC 4 cut(s) 277, 424, 1088, 1484
BsoBI CYCGRG 1 cut(s) 1290
Bsp1286I GDGCHC 5 cut(s) 59, 395, 432, 1140, 1211
Bsp143I GATC 1 cut(s) 1279
BspACI CCGC 1 cut(s) 673
BspANI GGCC 4 cut(s) 277, 424, 1088, 1484
BspCNI CTCAG 5 cut(s) 34, 45, 388, 1062, 1223
BspHI TCATGA 1 cut(s) 928
BspLI GGNNCC 5 cut(s) 106, 125, 521, 906, 1412
BspOI GCTAGC 1 cut(s) 1190
BspPI GGATC 1 cut(s) 1274
BspQI GCTCTTC 1 cut(s) 182
BspT107I GGYRCC 1 cut(s) 904
BsrDI GCAATG 4 cut(s) 421, 708, 888, 1353
BsrI ACTGG 2 cut(s) 683, 1389
BssECI CCNNGG 3 cut(s) 405, 894, 1200
BssMI GATC 1 cut(s) 1279
BssNAI GTATAC 1 cut(s) 1048
BssSI CACGAG 1 cut(s) 753
BssT1I CCWWGG 1 cut(s) 405
Bst1107I GTATAC 1 cut(s) 1048
Bst2BI CACGAG 1 cut(s) 753
Bst2UI CCWGG 2 cut(s) 232, 1343
Bst4CI ACNGT 5 cut(s) 717, 858, 1238, 1420, 1446
Bst6I CTCTTC 1 cut(s) 182
BstAPI GCANNNNNTGC 2 cut(s) 629, 1196
BstBAI YACGTR 1 cut(s) 97
BstC8I GCNNGC 4 cut(s) 412, 879, 1016, 1188
BstDEI CTNAG 7 cut(s) 21, 53, 396, 1070, 1090, 1210, 1502
BstDSI CCRYGG 1 cut(s) 894
BstF5I GGATG 2 cut(s) 1048, 1285
BstKTI GATC 1 cut(s) 1282
BstMAI GTCTC 2 cut(s) 220, 355
BstMBI GATC 1 cut(s) 1279
BstMWI GCNNNNNNNGC 6 cut(s) 629, 758, 820, 1196, 1388, 1490
BstNI CCWGG 2 cut(s) 232, 1343
BstNSI RCATGY 1 cut(s) 814
BstPAI GACNNNNGTC 1 cut(s) 1444
BstSCI CCNGG 2 cut(s) 230, 1341
BstSLI GKGCMC 1 cut(s) 1140
BstV1I GCAGC 5 cut(s) 607, 768, 933, 1316, 1378
BstV2I GAAGAC 1 cut(s) 323
BstX2I RGATCY 1 cut(s) 1279
BstXI CCANNNNNNTGG 1 cut(s) 901
BstYI RGATCY 1 cut(s) 1279
BstZ17I GTATAC 1 cut(s) 1048
Bsu36I CCTNAGG 2 cut(s) 21, 1090
BsuRI GGCC 4 cut(s) 277, 424, 1088, 1484
BtgI CCRYGG 1 cut(s) 894
BtsCI GGATG 2 cut(s) 1048, 1285
BtsI GCAGTG 1 cut(s) 1197
BtsIMutI CAGTG 2 cut(s) 1197, 1382
Cac8I GCNNGC 4 cut(s) 412, 879, 1016, 1188
CciI TCATGA 1 cut(s) 928
Cfr13I GGNCC 3 cut(s) 123, 228, 1339
CseI GACGC 1 cut(s) 1397
Csp6I GTAC 2 cut(s) 803, 1000
CspCI CAANNNNNGTGG 2 cut(s) 690, 725
CviAII CATG 7 cut(s) 307, 433, 811, 929, 996, 1141, 1169
CviQI GTAC 2 cut(s) 803, 1000
DdeI CTNAG 7 cut(s) 21, 53, 396, 1070, 1090, 1210, 1502
DpnI GATC 1 cut(s) 1281
DpnII GATC 1 cut(s) 1279
DriI GACNNNNNGTC 1 cut(s) 226
EaeI YGGCCR 2 cut(s) 422, 1482
Eam1104I CTCTTC 1 cut(s) 182
Eam1105I GACNNNNNGTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 182
EciI GGCGGA 1 cut(s) 688
Ecl136II GAGCTC 2 cut(s) 57, 430
Eco130I CCWWGG 1 cut(s) 405
Eco24I GRGCYC 3 cut(s) 59, 395, 432
Eco47I GGWCC 3 cut(s) 123, 228, 1339
Eco53kI GAGCTC 2 cut(s) 57, 430
Eco72I CACGTG 1 cut(s) 97
Eco81I CCTNAGG 2 cut(s) 21, 1090
Eco88I CYCGRG 1 cut(s) 1290
EcoICRI GAGCTC 2 cut(s) 57, 430
EcoO109I RGGNCCY 1 cut(s) 123
EcoRI GAATTC 2 cut(s) 48, 448
EcoRII CCWGG 2 cut(s) 230, 1341
EcoT14I CCWWGG 1 cut(s) 405
EcoT22I ATGCAT 1 cut(s) 997
EcoT38I GRGCYC 3 cut(s) 59, 395, 432
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 7 cut(s) 310, 436, 814, 932, 999, 1144, 1172
FaqI GGGAC 3 cut(s) 109, 726, 1432
FatI CATG 7 cut(s) 306, 432, 810, 928, 995, 1140, 1168
FblI GTMKAC 1 cut(s) 1047
Fnu4HI GCNGC 5 cut(s) 621, 782, 947, 1305, 1392
FokI GGATG 2 cut(s) 1055, 1272
FriOI GRGCYC 3 cut(s) 59, 395, 432
Fsp4HI GCNGC 5 cut(s) 621, 782, 947, 1305, 1392
FspBI CTAG 5 cut(s) 225, 552, 800, 1187, 1519
GluI GCNGC 5 cut(s) 621, 782, 947, 1305, 1392
GsuI CTGGAG 1 cut(s) 845
HaeIII GGCC 4 cut(s) 277, 424, 1088, 1484
HapII CCGG 2 cut(s) 527, 1408
HgaI GACGC 1 cut(s) 1397
Hin1II CATG 7 cut(s) 310, 436, 814, 932, 999, 1144, 1172
HincII GTYRAC 1 cut(s) 865
HindII GTYRAC 1 cut(s) 865
HindIII AAGCTT 3 cut(s) 129, 540, 1462
HinfI GANTC 2 cut(s) 8, 730
HpaII CCGG 2 cut(s) 527, 1408
HphI GGTGA 2 cut(s) 1034, 1106
Hpy166II GTNNAC 2 cut(s) 865, 1048
Hpy188I TCNGA 7 cut(s) 13, 54, 220, 385, 397, 463, 1213
Hpy188III TCNNGA 7 cut(s) 23, 335, 929, 952, 1056, 1069, 1423
Hpy8I GTNNAC 2 cut(s) 865, 1048
HpyAV CCTTC 1 cut(s) 1517
HpyCH4III ACNGT 5 cut(s) 717, 858, 1238, 1420, 1446
HpyCH4IV ACGT 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 6 cut(s) 629, 758, 820, 1196, 1388, 1490
HpyF3I CTNAG 7 cut(s) 21, 53, 396, 1070, 1090, 1210, 1502
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 7 cut(s) 310, 436, 814, 932, 999, 1144, 1172
Kzo9I GATC 1 cut(s) 1279
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 2 cut(s) 62, 110
Lsp1109I GCAGC 5 cut(s) 607, 768, 933, 1316, 1378
MaeI CTAG 5 cut(s) 225, 552, 800, 1187, 1519
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 5 cut(s) 266, 474, 731, 838, 1249
MalI GATC 1 cut(s) 1281
MboI GATC 1 cut(s) 1279
MboII GAAGA 5 cut(s) 169, 323, 755, 1171, 1381
MflI RGATCY 1 cut(s) 1279
MhlI GDGCHC 5 cut(s) 59, 395, 432, 1140, 1211
MlsI TGGCCA 2 cut(s) 424, 1484
MluCI AATT 8 cut(s) 26, 48, 291, 301, 448, 1059, 1124, 1312
MluNI TGGCCA 2 cut(s) 424, 1484
MlyI GAGTC 2 cut(s) 17, 739
MmeI TCCRAC 1 cut(s) 84
Mox20I TGGCCA 2 cut(s) 424, 1484
Mph1103I ATGCAT 1 cut(s) 997
MroXI GAANNNNTTC 1 cut(s) 1078
MscI TGGCCA 2 cut(s) 424, 1484
MseI TTAA 7 cut(s) 684, 720, 773, 792, 816, 1274, 1311
Msp20I TGGCCA 2 cut(s) 424, 1484
MspI CCGG 2 cut(s) 527, 1408
MspR9I CCNGG 2 cut(s) 232, 1343
MvaI CCWGG 2 cut(s) 232, 1343
MwoI GCNNNNNNNGC 6 cut(s) 629, 758, 820, 1196, 1388, 1490
NdeII GATC 1 cut(s) 1279
NheI GCTAGC 1 cut(s) 1186
NlaIII CATG 7 cut(s) 310, 436, 814, 932, 999, 1144, 1172
NlaIV GGNNCC 5 cut(s) 106, 125, 521, 906, 1412
NmeAIII GCCGAG 2 cut(s) 551, 1225
NmuCI GTSAC 3 cut(s) 266, 731, 838
NsiI ATGCAT 1 cut(s) 997
NspI RCATGY 1 cut(s) 814
PaeR7I CTCGAG 1 cut(s) 1290
PagI TCATGA 1 cut(s) 928
PciSI GCTCTTC 1 cut(s) 182
PdmI GAANNNNTTC 1 cut(s) 1078
PkrI GCNGC 5 cut(s) 622, 783, 948, 1306, 1393
PleI GAGTC 2 cut(s) 16, 738
PmaCI CACGTG 1 cut(s) 97
PmlI CACGTG 1 cut(s) 97
PpsI GAGTC 2 cut(s) 16, 738
Ppu21I YACGTR 1 cut(s) 97
PpuMI RGGWCCY 1 cut(s) 123
PshAI GACNNNNGTC 1 cut(s) 1444
Psp124BI GAGCTC 2 cut(s) 59, 432
Psp5II RGGWCCY 1 cut(s) 123
Psp6I CCWGG 2 cut(s) 230, 1341
PspCI CACGTG 1 cut(s) 97
PspGI CCWGG 2 cut(s) 230, 1341
PspN4I GGNNCC 5 cut(s) 106, 125, 521, 906, 1412
PspPI GGNCC 3 cut(s) 123, 228, 1339
PspPPI RGGWCCY 1 cut(s) 123
PspXI VCTCGAGB 1 cut(s) 1290
PsuI RGATCY 1 cut(s) 1279
RsaI GTAC 2 cut(s) 804, 1001
RsaNI GTAC 2 cut(s) 803, 1000
SacI GAGCTC 2 cut(s) 59, 432
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 7 cut(s) 684, 720, 773, 792, 816, 1274, 1311
SatI GCNGC 5 cut(s) 621, 782, 947, 1305, 1392
Sau3AI GATC 1 cut(s) 1279
Sau96I GGNCC 3 cut(s) 123, 228, 1339
ScaI AGTACT 1 cut(s) 804
SchI GAGTC 2 cut(s) 17, 739
ScrFI CCNGG 2 cut(s) 232, 1343
SduI GDGCHC 5 cut(s) 59, 395, 432, 1140, 1211
Sfr274I CTCGAG 1 cut(s) 1290
SinI GGWCC 3 cut(s) 123, 228, 1339
SlaI CTCGAG 1 cut(s) 1290
SmlI CTYRAG 1 cut(s) 1290
SmoI CTYRAG 1 cut(s) 1290
Sse9I AATT 8 cut(s) 26, 48, 291, 301, 448, 1059, 1124, 1312
SsiI CCGC 1 cut(s) 673
SspI AATATT 1 cut(s) 579
SspMI CTAG 5 cut(s) 225, 552, 800, 1187, 1519
SstI GAGCTC 2 cut(s) 59, 432
StyD4I CCNGG 2 cut(s) 230, 1341
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 5 cut(s) 717, 858, 1238, 1420, 1446
TaiI ACGT 1 cut(s) 99
TaqI TCGA 3 cut(s) 807, 1242, 1291
TasI AATT 8 cut(s) 26, 48, 291, 301, 448, 1059, 1124, 1312
TatI WGTACW 1 cut(s) 802
Tru1I TTAA 7 cut(s) 684, 720, 773, 792, 816, 1274, 1311
Tru9I TTAA 7 cut(s) 684, 720, 773, 792, 816, 1274, 1311
TscAI CASTG 2 cut(s) 1197, 1389
TseFI GTSAC 3 cut(s) 266, 731, 838
TseI GCWGC 5 cut(s) 620, 781, 946, 1304, 1391
Tsp45I GTSAC 3 cut(s) 266, 731, 838
TspDTI ATGAA 6 cut(s) 169, 323, 861, 945, 1230, 1499
TspGWI ACGGA 4 cut(s) 60, 512, 911, 1022
TspRI CASTG 2 cut(s) 1197, 1389
VpaK11BI GGWCC 3 cut(s) 123, 228, 1339
XapI RAATTY 3 cut(s) 48, 448, 1059
XceI RCATGY 1 cut(s) 814
XhoI CTCGAG 1 cut(s) 1290
XmiI GTMKAC 1 cut(s) 1047
XmnI GAANNNNTTC 1 cut(s) 1078
XspI CTAG 5 cut(s) 225, 552, 800, 1187, 1519
ZrmI AGTACT 1 cut(s) 804
Zsp2I ATGCAT 1 cut(s) 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.